Wall clock time and date at job start Mon Mar 30 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34852 * 117.00363 * 270.00156 * 13 3 2 15 15 O 1.21552 * 119.99943 * 0.02562 * 14 13 3 16 16 C 1.46709 * 119.99827 * 179.97438 * 14 13 3 17 17 C 1.34591 * 119.99618 * 180.02562 * 16 14 13 18 18 C 1.47529 * 120.00008 * 180.02562 * 17 16 14 19 19 C 1.39980 * 120.58395 * 179.97438 * 18 17 16 20 20 C 1.38508 * 118.23951 * 180.02562 * 19 18 17 21 21 N 1.32332 * 119.19082 * 359.97438 * 20 19 18 22 22 C 1.31879 * 121.11442 * 0.02562 * 21 20 19 23 23 N 1.31571 * 121.94284 * 359.71409 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 1.07996 * 120.00327 * 0.02562 * 16 14 13 31 31 H 1.08005 * 120.00309 * 359.97438 * 17 16 14 32 32 H 1.07996 * 120.88101 * 359.97438 * 19 18 17 33 33 H 1.07998 * 120.40505 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.02785 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6559 2.0916 1.2407 14 6 0.4672 2.7283 1.2561 15 8 -0.2289 2.7400 0.2597 16 6 0.0139 3.4060 2.4757 17 6 -1.1727 4.0411 2.4912 18 6 -1.6284 4.7230 3.7175 19 6 -2.8600 5.3876 3.7470 20 6 -3.2397 6.0121 4.9236 21 7 -2.4332 5.9597 5.9714 22 6 -1.2787 5.3252 5.9117 23 7 -0.8766 4.7129 4.8187 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 0.6322 3.3953 3.3611 31 1 -1.7909 4.0521 1.6057 32 1 -3.4970 5.4136 2.8752 33 1 -4.1829 6.5346 4.9854 34 1 -0.6464 5.3040 6.7871 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187943722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:25 Heat of formation + Delta-G solvation = -28.205101 kcal Electronic energy + Delta-G solvation = -18580.597184 eV Core-core repulsion = 15479.178964 eV Total energy + Delta-G solvation = -3101.418220 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13959 -39.57992 -36.13919 -34.95327 -33.50959 -32.95856 -31.55288 -31.14786 -27.43491 -25.77799 -24.60297 -23.37771 -22.29383 -20.13478 -19.28359 -18.06628 -17.14835 -16.85034 -16.38662 -15.74935 -15.43605 -15.28737 -14.99673 -14.52853 -13.92749 -13.69559 -13.18416 -12.82809 -12.40766 -12.06665 -11.58677 -11.46206 -11.32938 -11.19171 -11.12377 -10.98136 -10.66442 -10.34495 -10.28771 -9.87724 -9.72798 -9.55032 -9.40240 -9.12028 -8.82109 -8.47124 -6.19912 -4.26820 0.12807 0.70886 1.76146 3.23215 3.29626 3.33901 3.41384 3.46812 3.70348 3.79217 3.90478 4.24966 4.38935 4.73132 4.77499 5.12228 5.17064 5.23852 5.40538 5.59507 6.05071 6.10105 6.20919 6.26085 6.31782 6.44573 6.73199 6.84680 6.93279 7.14330 7.20195 7.59803 7.71322 7.80450 7.90087 8.13403 8.56501 8.85690 9.38407 10.86976 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036045 B = 0.003756 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.614083 B = 7452.039530 C = 7917.074163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.347 6.347 14 C 0.477 3.523 15 O -0.511 6.511 16 C -0.096 4.096 17 C -0.074 4.074 18 C 0.205 3.795 19 C -0.211 4.211 20 C 0.148 3.852 21 N -0.527 5.527 22 C 0.299 3.701 23 N -0.512 5.512 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.266 0.734 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 8.040 11.335 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.263 6.263 14 C 0.322 3.678 15 O -0.403 6.403 16 C -0.118 4.118 17 C -0.093 4.093 18 C 0.061 3.939 19 C -0.233 4.233 20 C -0.017 4.017 21 N -0.242 5.242 22 C 0.011 3.989 23 N -0.227 5.227 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.187 0.813 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.839 7.892 11.654 17.765 hybrid contribution 0.326 -0.080 -0.966 1.022 sum -10.512 7.813 10.688 16.905 Atomic orbital electron populations 1.21864 0.98384 0.99080 1.00701 1.22028 0.92645 0.99284 1.03480 1.20737 0.95158 0.88820 0.78488 0.93371 1.21090 0.89620 1.38929 1.06289 0.91185 1.24887 0.99302 0.94732 0.95038 1.69895 1.35323 1.37884 1.09478 0.86222 0.83830 0.77892 0.78230 1.19440 1.20705 1.20759 1.86607 1.33392 1.62094 1.44174 1.21140 0.81383 0.77478 0.87814 1.90805 1.55434 1.58479 1.35572 1.22851 0.96583 0.94958 0.97430 1.22106 0.96744 0.95683 0.94766 1.20404 0.90017 0.91327 0.92115 1.23041 0.98252 1.00596 1.01419 1.23211 0.98159 0.92661 0.87655 1.68382 1.05694 1.18767 1.31328 1.24973 0.90591 0.87938 0.95385 1.68544 1.34821 1.19261 1.00044 0.94991 0.94747 0.92785 0.93863 0.87248 0.92424 0.83245 0.83128 0.82954 0.81279 0.78490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.56 37.16 0.32 -2.79 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.83 2.25 -27.89 -0.06 5.76 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.55 8.90 -34.44 -0.31 -14.86 16 6 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 O -0.35 -8.24 9.82 -40.91 -0.40 -8.64 16 14 C 0.48 9.80 6.35 34.15 0.22 10.02 16 15 O -0.51 -11.37 13.42 -19.30 -0.26 -11.63 16 16 C -0.10 -1.52 9.70 -37.45 -0.36 -1.88 16 17 C -0.07 -0.97 9.49 -37.09 -0.35 -1.32 16 18 C 0.20 2.40 6.74 -82.77 -0.56 1.84 16 19 C -0.21 -1.86 9.95 -38.83 -0.39 -2.24 16 20 C 0.15 1.22 11.30 -17.24 -0.19 1.03 16 21 N -0.53 -5.37 10.42 -14.64 -0.15 -5.53 16 22 C 0.30 3.08 12.27 -92.27 -1.13 1.95 16 23 N -0.51 -6.30 9.50 -11.25 -0.11 -6.40 16 24 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 1.22 7.79 -51.93 -0.40 0.81 16 27 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.15 2.22 7.45 -52.49 -0.39 1.83 16 31 H 0.15 1.83 7.52 -52.48 -0.39 1.44 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -31.43 300.10 -7.70 -39.13 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.84 Total: 1.27 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.06 Total: -4.39 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.37 Total: -36.19 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.66 Total: -20.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.43 -7.70 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187943722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.928 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds