Wall clock time and date at job start Mon Mar 30 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34852 * 117.00363 * 270.00156 * 13 3 2 15 15 O 1.21552 * 119.99943 * 0.02562 * 14 13 3 16 16 C 1.46709 * 119.99827 * 179.97438 * 14 13 3 17 17 C 1.34591 * 119.99618 * 180.02562 * 16 14 13 18 18 C 1.47529 * 120.00008 * 180.02562 * 17 16 14 19 19 C 1.39980 * 120.58395 * 179.97438 * 18 17 16 20 20 C 1.38508 * 118.23951 * 180.02562 * 19 18 17 21 21 N 1.32332 * 119.19082 * 359.97438 * 20 19 18 22 22 C 1.31879 * 121.11442 * 0.02562 * 21 20 19 23 23 N 1.31571 * 121.94284 * 359.71409 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 1.07996 * 120.00327 * 0.02562 * 16 14 13 31 31 H 1.08005 * 120.00309 * 359.97438 * 17 16 14 32 32 H 1.07996 * 120.88101 * 359.97438 * 19 18 17 33 33 H 1.07998 * 120.40505 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.02785 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6559 2.0916 1.2407 14 6 0.4672 2.7283 1.2561 15 8 -0.2289 2.7400 0.2597 16 6 0.0139 3.4060 2.4757 17 6 -1.1727 4.0411 2.4912 18 6 -1.6284 4.7230 3.7175 19 6 -2.8600 5.3876 3.7470 20 6 -3.2397 6.0121 4.9236 21 7 -2.4332 5.9597 5.9714 22 6 -1.2787 5.3252 5.9117 23 7 -0.8766 4.7129 4.8187 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 0.6322 3.3953 3.3611 31 1 -1.7909 4.0521 1.6057 32 1 -3.4970 5.4136 2.8752 33 1 -4.1829 6.5346 4.9854 34 1 -0.6464 5.3040 6.7871 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187943722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:25 Heat of formation + Delta-G solvation = -46.186365 kcal Electronic energy + Delta-G solvation = -18581.376910 eV Core-core repulsion = 15479.178964 eV Total energy + Delta-G solvation = -3102.197946 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.93269 -41.27893 -37.85336 -36.01369 -35.49784 -33.81642 -33.36535 -32.27861 -29.39613 -26.96226 -25.41775 -25.14960 -23.63864 -21.88251 -20.78315 -19.25079 -18.71950 -18.28291 -17.61413 -17.15691 -17.00394 -16.42073 -16.32515 -15.82664 -14.99961 -14.94453 -14.63633 -14.43179 -14.06725 -13.56996 -13.34861 -13.13141 -13.10717 -12.83393 -12.55318 -12.45232 -12.14006 -11.87517 -11.77255 -11.53125 -11.35381 -11.17379 -10.83222 -10.53953 -10.34504 -10.10749 -8.28194 -6.44782 -0.86862 0.00949 0.67358 1.41799 1.42295 1.56075 1.96862 1.99959 2.40718 2.85757 2.90584 3.01486 3.25902 3.48091 3.86020 4.06451 4.07886 4.17386 4.37134 4.39600 4.54706 4.60504 4.66244 4.82069 4.96062 5.07637 5.15458 5.20904 5.36246 5.39110 5.50737 5.66263 5.94782 5.96427 6.10056 6.59159 6.93499 7.04610 7.26377 8.78845 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036045 B = 0.003756 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.614083 B = 7452.039530 C = 7917.074163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.275 1.275 13 O -0.361 6.361 14 C 0.477 3.523 15 O -0.537 6.537 16 C -0.133 4.133 17 C -0.026 4.026 18 C 0.171 3.829 19 C -0.193 4.193 20 C 0.151 3.849 21 N -0.536 5.536 22 C 0.290 3.710 23 N -0.536 5.536 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.271 0.729 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.185 0.815 33 H 0.210 0.790 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 8.989 12.493 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.029 0.971 5 C -0.590 4.590 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.200 1.200 13 O -0.278 6.278 14 C 0.324 3.676 15 O -0.430 6.430 16 C -0.154 4.154 17 C -0.045 4.045 18 C 0.028 3.972 19 C -0.214 4.214 20 C -0.015 4.015 21 N -0.250 5.250 22 C 0.002 3.998 23 N -0.250 5.250 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.180 0.820 32 H 0.202 0.798 33 H 0.227 0.773 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.061 8.842 12.823 19.700 hybrid contribution 0.491 -0.224 -1.234 1.347 sum -11.570 8.618 11.589 18.505 Atomic orbital electron populations 1.21716 0.96104 1.00708 1.00183 1.21879 0.94668 0.97972 1.02372 1.20432 0.94603 0.89411 0.78467 0.97092 1.21367 0.90582 1.40061 1.06941 0.91809 1.25785 1.04235 0.93821 0.94309 1.70006 1.37347 1.37879 1.09840 0.85163 0.77710 0.78356 0.78347 1.18986 1.19594 1.20027 1.86584 1.35480 1.62958 1.42731 1.21886 0.79988 0.76652 0.89099 1.90777 1.55716 1.59582 1.36881 1.22501 0.98680 0.98595 0.95655 1.22366 0.94786 0.91709 0.95603 1.20397 0.91766 0.93375 0.91622 1.23396 0.96882 0.98399 1.02767 1.23932 0.99015 0.91826 0.86686 1.68466 1.05790 1.18499 1.32242 1.25432 0.91155 0.87707 0.95533 1.68495 1.35744 1.20027 1.00784 0.94512 0.91930 0.94214 0.93692 0.89384 0.91967 0.82851 0.82036 0.79797 0.77300 0.76376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.56 71.98 0.62 -5.08 16 2 C -0.13 -6.67 5.49 30.59 0.17 -6.50 16 3 C 0.22 12.38 2.25 29.85 0.07 12.45 16 4 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 5 C -0.55 -31.84 8.90 25.60 0.23 -31.61 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.98 43.24 29.54 68.60 2.03 45.27 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 O -0.36 -17.92 9.82 -57.65 -0.57 -18.49 16 14 C 0.48 20.26 6.35 70.03 0.44 20.70 16 15 O -0.54 -24.64 13.42 19.66 0.26 -24.38 16 16 C -0.13 -4.24 9.70 23.65 0.23 -4.01 16 17 C -0.03 -0.64 9.49 23.89 0.23 -0.42 16 18 C 0.17 3.67 6.74 41.79 0.28 3.96 16 19 C -0.19 -2.70 9.95 22.76 0.23 -2.47 16 20 C 0.15 1.90 11.30 84.68 0.96 2.86 16 21 N -0.54 -9.41 10.42 -200.22 -2.09 -11.49 16 22 C 0.29 5.44 12.27 180.93 2.22 7.66 16 23 N -0.54 -12.49 9.50 -189.50 -1.80 -14.29 16 24 H 0.04 1.54 6.06 -2.39 -0.01 1.53 16 25 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.04 1.82 7.79 -2.38 -0.02 1.81 16 27 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.09 4.86 5.95 -2.39 -0.01 4.85 16 29 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.15 4.70 7.45 -2.91 -0.02 4.68 16 31 H 0.16 3.65 7.52 -2.91 -0.02 3.63 16 32 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.21 0.86 8.06 -2.91 -0.02 0.83 16 34 H 0.22 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -70.30 300.10 5.30 -65.00 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.11 Total: 11.39 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 6.11 Total: -1.00 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -3.64 Total: -77.80 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.30 Total: -42.87 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.30 5.30 -65.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187943722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.813 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds