Wall clock time and date at job start Mon Mar 30 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.62610 * 2 1 4 4 C 1.53241 * 109.62716 * 120.38233 * 2 1 3 5 5 N 1.46903 * 109.34182 * 173.54422 * 4 2 1 6 6 C 1.46899 * 111.26254 * 296.89572 * 5 4 2 7 7 C 1.53242 * 109.34471 * 63.10823 * 6 5 4 8 8 N 1.47073 * 109.63251 * 239.41170 * 2 1 3 9 9 S 1.65598 * 120.87966 * 9.13013 * 8 2 1 10 10 O 1.42106 * 104.27731 * 192.51735 * 9 8 2 11 11 O 1.42100 * 104.27863 * 320.37160 * 9 8 2 12 12 C 1.81406 * 104.45069 * 76.44624 * 9 8 2 13 13 C 1.52999 * 109.47048 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.46875 * 180.02562 * 13 12 9 15 15 H 1.07998 * 119.99792 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99822 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99799 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99895 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47201 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47505 * 119.99581 * 18 16 14 21 21 H 1.48498 * 109.46966 * 239.99717 * 18 16 14 22 22 H 1.09000 * 109.47448 * 308.08503 * 1 2 3 23 23 H 1.09005 * 109.46755 * 68.09187 * 1 2 3 24 24 H 1.08999 * 109.46875 * 188.08364 * 1 2 3 25 25 H 1.09001 * 109.49664 * 293.50677 * 4 2 1 26 26 H 1.09006 * 109.49324 * 53.58422 * 4 2 1 27 27 H 1.00896 * 110.99918 * 61.03986 * 5 4 2 28 28 H 1.09000 * 109.50012 * 303.13907 * 6 5 4 29 29 H 1.09004 * 109.49190 * 183.06331 * 6 5 4 30 30 H 1.08997 * 109.63292 * 186.45790 * 7 6 5 31 31 H 1.09001 * 109.62598 * 65.87050 * 7 6 5 32 32 H 1.08994 * 109.46580 * 299.99988 * 12 9 8 33 33 H 1.09001 * 109.46890 * 60.00330 * 12 9 8 34 34 H 1.09003 * 109.47106 * 300.00018 * 13 12 9 35 35 H 1.09001 * 109.47151 * 59.99941 * 13 12 9 36 36 H 0.97003 * 120.00151 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7300 1.2452 5 7 3.5055 -0.8623 1.1626 6 6 3.9016 -1.6870 0.0133 7 6 3.4630 -0.9962 -1.2824 8 7 2.0241 -0.7049 -1.1925 9 16 0.9880 -1.1580 -2.4022 10 8 1.7535 -2.0465 -3.2047 11 8 -0.1746 -1.6055 -1.7186 12 6 0.6448 0.3785 -3.3034 13 6 -0.3128 0.0878 -4.4607 14 6 -0.5975 1.3642 -5.2098 15 1 -0.1406 2.2899 -4.8924 16 6 -1.4411 1.3500 -6.3003 17 7 -1.9969 0.2227 -6.6870 18 14 -1.7933 2.9319 -7.2292 19 1 -1.0504 4.0524 -6.5983 20 1 -1.3601 2.7835 -8.6418 21 1 -3.2499 3.2177 -7.1856 22 1 -0.3634 0.6339 0.8089 23 1 -0.3633 0.3835 -0.9535 24 1 -0.3633 -1.0175 0.1445 25 1 1.7809 -0.1601 2.1361 26 1 1.5923 -1.7203 1.2993 27 1 3.9491 0.0433 1.1278 28 1 3.4234 -2.6639 0.0845 29 1 4.9845 -1.8111 0.0107 30 1 3.6510 -1.6548 -2.1303 31 1 4.0178 -0.0663 -1.4074 32 1 0.1895 1.1021 -2.6274 33 1 1.5766 0.7848 -3.6968 34 1 0.1430 -0.6358 -5.1366 35 1 -1.2447 -0.3189 -4.0678 36 1 -2.5902 0.2126 -7.4544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193361032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:13 Heat of formation + Delta-G solvation = -66.437819 kcal Electronic energy + Delta-G solvation = -18921.514535 eV Core-core repulsion = 15953.882371 eV Total energy + Delta-G solvation = -2967.632164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.09182 -36.88766 -35.48208 -33.95535 -33.67247 -32.35232 -31.18845 -27.49077 -25.75896 -24.89868 -22.58219 -21.71536 -21.17113 -18.58808 -17.36224 -16.57264 -16.25110 -15.66022 -15.39908 -15.16894 -14.60039 -14.59280 -14.37390 -13.73464 -13.46842 -12.73495 -12.64155 -12.51416 -12.08388 -11.80903 -11.75805 -11.50010 -11.35858 -11.31705 -11.19104 -11.10335 -10.93152 -10.51930 -10.40278 -10.36864 -9.79809 -9.52089 -9.14835 -8.53623 -8.25978 -6.15403 -4.21154 0.72147 2.94455 3.23054 3.30362 3.33730 4.08753 4.24077 4.35258 4.55135 4.61126 4.75252 4.95666 5.04135 5.08613 5.19827 5.30794 5.44840 5.45744 5.57085 5.65427 5.68134 5.81626 5.82598 5.99325 6.08051 6.42380 6.55623 6.64346 6.75380 7.16001 7.26520 7.32185 7.77683 8.14366 8.82445 9.43881 10.95688 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.005260 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.126658 B = 5322.226348 C = 5436.738519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 H 0.071 0.929 4 C 0.051 3.949 5 N -0.684 5.684 6 C 0.046 3.954 7 C 0.077 3.923 8 N -1.005 6.005 9 S 2.591 3.409 10 O -0.968 6.968 11 O -0.960 6.960 12 C -0.591 4.591 13 C 0.029 3.971 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.340 0.660 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 0.319 14.495 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.008 3.992 3 H 0.089 0.911 4 C -0.080 4.080 5 N -0.312 5.312 6 C -0.085 4.085 7 C -0.050 4.050 8 N -0.843 5.843 9 S 2.691 3.309 10 O -0.959 6.959 11 O -0.950 6.950 12 C -0.724 4.724 13 C -0.010 4.010 14 C -0.560 4.560 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.119 0.881 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.157 0.843 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.660 -1.213 14.701 17.633 hybrid contribution -0.300 2.243 -1.492 2.711 sum 9.360 1.031 13.209 16.222 Atomic orbital electron populations 1.22640 0.92469 1.05846 1.03115 1.21709 0.95598 0.95557 0.86330 0.91104 1.22445 0.87867 1.01590 0.96136 1.60680 1.07887 1.20043 1.42557 1.22359 1.00942 0.97527 0.87698 1.22178 0.80645 1.00996 1.01175 1.58117 1.18455 1.74422 1.33266 1.05713 0.73538 0.78041 0.73607 1.93498 1.70493 1.62276 1.69585 1.93588 1.49555 1.80573 1.71266 1.30548 1.10415 1.18729 1.12672 1.18964 0.92666 0.99358 0.90057 1.21036 1.28438 0.93686 1.12816 0.92042 1.25068 0.95594 0.96657 0.97137 1.69962 1.30764 1.25711 1.26387 0.86413 0.78184 0.83015 0.79676 1.19661 1.20747 1.20745 0.91207 0.91821 0.88116 0.89699 0.90096 0.84299 0.90358 0.89599 0.87814 0.91733 0.86305 0.86400 0.94932 0.94836 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 7.61 37.16 0.28 -2.07 16 2 C 0.12 1.34 3.65 -67.49 -0.25 1.09 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.51 5.99 -3.70 -0.02 0.49 16 5 N -0.68 -6.55 6.85 -113.50 -0.78 -7.33 16 6 C 0.05 0.46 6.70 -3.70 -0.02 0.43 16 7 C 0.08 0.89 6.63 -3.60 -0.02 0.87 16 8 N -1.01 -13.78 3.25 -106.20 -0.34 -14.12 16 9 S 2.59 47.05 4.85 -107.50 -0.52 46.53 16 10 O -0.97 -20.20 16.32 -57.54 -0.94 -21.14 16 11 O -0.96 -19.19 13.65 -57.54 -0.79 -19.98 16 12 C -0.59 -11.48 5.86 37.16 0.22 -11.26 16 13 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 14 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.93 4.86 -51.93 -0.25 0.68 16 24 H 0.10 1.48 6.43 -51.93 -0.33 1.14 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.93 8.12 -51.93 -0.42 0.50 16 27 H 0.34 2.71 8.83 -39.29 -0.35 2.36 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.32 6.62 -51.93 -0.34 0.97 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.12 2.09 6.66 -51.93 -0.35 1.74 16 33 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -33.40 295.92 -8.95 -42.35 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.39 Total: 1.89 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -0.37 Total: -23.05 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.39 Total: -47.22 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.72 Total: -41.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 47.05 SS G_CDS: -0.52 Total: 46.53 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.40 -8.95 -42.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193361032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.090 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds