Wall clock time and date at job start Mon Mar 30 2020 05:07:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.62610 * 2 1
4 4 C 1.53241 * 109.62716 * 120.38233 * 2 1 3
5 5 N 1.46903 * 109.34182 * 173.54422 * 4 2 1
6 6 C 1.46899 * 111.26254 * 296.89572 * 5 4 2
7 7 C 1.53242 * 109.34471 * 63.10823 * 6 5 4
8 8 N 1.47073 * 109.63251 * 239.41170 * 2 1 3
9 9 S 1.65598 * 120.87966 * 9.13013 * 8 2 1
10 10 O 1.42106 * 104.27731 * 192.51735 * 9 8 2
11 11 O 1.42100 * 104.27863 * 320.37160 * 9 8 2
12 12 C 1.81406 * 104.45069 * 76.44624 * 9 8 2
13 13 C 1.52999 * 109.47048 * 179.97438 * 12 9 8
14 14 C 1.50706 * 109.46875 * 180.02562 * 13 12 9
15 15 H 1.07998 * 119.99792 * 0.02562 * 14 13 12
16 16 C 1.37879 * 119.99822 * 180.02562 * 14 13 12
17 17 N 1.31508 * 119.99799 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99895 * 180.02562 * 16 14 13
19 19 H 1.48501 * 109.47201 * 359.97438 * 18 16 14
20 20 H 1.48500 * 109.47505 * 119.99581 * 18 16 14
21 21 H 1.48498 * 109.46966 * 239.99717 * 18 16 14
22 22 H 1.09000 * 109.47448 * 308.08503 * 1 2 3
23 23 H 1.09005 * 109.46755 * 68.09187 * 1 2 3
24 24 H 1.08999 * 109.46875 * 188.08364 * 1 2 3
25 25 H 1.09001 * 109.49664 * 293.50677 * 4 2 1
26 26 H 1.09006 * 109.49324 * 53.58422 * 4 2 1
27 27 H 1.00896 * 110.99918 * 61.03986 * 5 4 2
28 28 H 1.09000 * 109.50012 * 303.13907 * 6 5 4
29 29 H 1.09004 * 109.49190 * 183.06331 * 6 5 4
30 30 H 1.08997 * 109.63292 * 186.45790 * 7 6 5
31 31 H 1.09001 * 109.62598 * 65.87050 * 7 6 5
32 32 H 1.08994 * 109.46580 * 299.99988 * 12 9 8
33 33 H 1.09001 * 109.46890 * 60.00330 * 12 9 8
34 34 H 1.09003 * 109.47106 * 300.00018 * 13 12 9
35 35 H 1.09001 * 109.47151 * 59.99941 * 13 12 9
36 36 H 0.97003 * 120.00151 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8961 1.0267 0.0000
4 6 2.0447 -0.7300 1.2452
5 7 3.5055 -0.8623 1.1626
6 6 3.9016 -1.6870 0.0133
7 6 3.4630 -0.9962 -1.2824
8 7 2.0241 -0.7049 -1.1925
9 16 0.9880 -1.1580 -2.4022
10 8 1.7535 -2.0465 -3.2047
11 8 -0.1746 -1.6055 -1.7186
12 6 0.6448 0.3785 -3.3034
13 6 -0.3128 0.0878 -4.4607
14 6 -0.5975 1.3642 -5.2098
15 1 -0.1406 2.2899 -4.8924
16 6 -1.4411 1.3500 -6.3003
17 7 -1.9969 0.2227 -6.6870
18 14 -1.7933 2.9319 -7.2292
19 1 -1.0504 4.0524 -6.5983
20 1 -1.3601 2.7835 -8.6418
21 1 -3.2499 3.2177 -7.1856
22 1 -0.3634 0.6339 0.8089
23 1 -0.3633 0.3835 -0.9535
24 1 -0.3633 -1.0175 0.1445
25 1 1.7809 -0.1601 2.1361
26 1 1.5923 -1.7203 1.2993
27 1 3.9491 0.0433 1.1278
28 1 3.4234 -2.6639 0.0845
29 1 4.9845 -1.8111 0.0107
30 1 3.6510 -1.6548 -2.1303
31 1 4.0178 -0.0663 -1.4074
32 1 0.1895 1.1021 -2.6274
33 1 1.5766 0.7848 -3.6968
34 1 0.1430 -0.6358 -5.1366
35 1 -1.2447 -0.3189 -4.0678
36 1 -2.5902 0.2126 -7.4544
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000193361032.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:13
Heat of formation + Delta-G solvation = -66.437819 kcal
Electronic energy + Delta-G solvation = -18921.514535 eV
Core-core repulsion = 15953.882371 eV
Total energy + Delta-G solvation = -2967.632164 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.114 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.09182 -36.88766 -35.48208 -33.95535 -33.67247 -32.35232 -31.18845 -27.49077
-25.75896 -24.89868 -22.58219 -21.71536 -21.17113 -18.58808 -17.36224 -16.57264
-16.25110 -15.66022 -15.39908 -15.16894 -14.60039 -14.59280 -14.37390 -13.73464
-13.46842 -12.73495 -12.64155 -12.51416 -12.08388 -11.80903 -11.75805 -11.50010
-11.35858 -11.31705 -11.19104 -11.10335 -10.93152 -10.51930 -10.40278 -10.36864
-9.79809 -9.52089 -9.14835 -8.53623 -8.25978 -6.15403 -4.21154 0.72147
2.94455 3.23054 3.30362 3.33730 4.08753 4.24077 4.35258 4.55135
4.61126 4.75252 4.95666 5.04135 5.08613 5.19827 5.30794 5.44840
5.45744 5.57085 5.65427 5.68134 5.81626 5.82598 5.99325 6.08051
6.42380 6.55623 6.64346 6.75380 7.16001 7.26520 7.32185 7.77683
8.14366 8.82445 9.43881 10.95688
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.037368 B = 0.005260 C = 0.005149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 749.126658 B = 5322.226348 C = 5436.738519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.116 3.884
3 H 0.071 0.929
4 C 0.051 3.949
5 N -0.684 5.684
6 C 0.046 3.954
7 C 0.077 3.923
8 N -1.005 6.005
9 S 2.591 3.409
10 O -0.968 6.968
11 O -0.960 6.960
12 C -0.591 4.591
13 C 0.029 3.971
14 C -0.520 4.520
15 H 0.061 0.939
16 C 0.058 3.942
17 N -0.890 5.890
18 Si 0.900 3.100
19 H -0.272 1.272
20 H -0.282 1.282
21 H -0.282 1.282
22 H 0.069 0.931
23 H 0.063 0.937
24 H 0.100 0.900
25 H 0.085 0.915
26 H 0.081 0.919
27 H 0.340 0.660
28 H 0.078 0.922
29 H 0.086 0.914
30 H 0.104 0.896
31 H 0.064 0.936
32 H 0.119 0.881
33 H 0.118 0.882
34 H 0.032 0.968
35 H 0.033 0.967
36 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.031 0.319 14.495 17.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.008 3.992
3 H 0.089 0.911
4 C -0.080 4.080
5 N -0.312 5.312
6 C -0.085 4.085
7 C -0.050 4.050
8 N -0.843 5.843
9 S 2.691 3.309
10 O -0.959 6.959
11 O -0.950 6.950
12 C -0.724 4.724
13 C -0.010 4.010
14 C -0.560 4.560
15 H 0.080 0.920
16 C -0.145 4.145
17 N -0.528 5.528
18 Si 0.727 3.273
19 H -0.197 1.197
20 H -0.207 1.207
21 H -0.207 1.207
22 H 0.088 0.912
23 H 0.082 0.918
24 H 0.119 0.881
25 H 0.103 0.897
26 H 0.099 0.901
27 H 0.157 0.843
28 H 0.096 0.904
29 H 0.104 0.896
30 H 0.122 0.878
31 H 0.083 0.917
32 H 0.137 0.863
33 H 0.136 0.864
34 H 0.051 0.949
35 H 0.052 0.948
36 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 9.660 -1.213 14.701 17.633
hybrid contribution -0.300 2.243 -1.492 2.711
sum 9.360 1.031 13.209 16.222
Atomic orbital electron populations
1.22640 0.92469 1.05846 1.03115 1.21709 0.95598 0.95557 0.86330
0.91104 1.22445 0.87867 1.01590 0.96136 1.60680 1.07887 1.20043
1.42557 1.22359 1.00942 0.97527 0.87698 1.22178 0.80645 1.00996
1.01175 1.58117 1.18455 1.74422 1.33266 1.05713 0.73538 0.78041
0.73607 1.93498 1.70493 1.62276 1.69585 1.93588 1.49555 1.80573
1.71266 1.30548 1.10415 1.18729 1.12672 1.18964 0.92666 0.99358
0.90057 1.21036 1.28438 0.93686 1.12816 0.92042 1.25068 0.95594
0.96657 0.97137 1.69962 1.30764 1.25711 1.26387 0.86413 0.78184
0.83015 0.79676 1.19661 1.20747 1.20745 0.91207 0.91821 0.88116
0.89699 0.90096 0.84299 0.90358 0.89599 0.87814 0.91733 0.86305
0.86400 0.94932 0.94836 0.92546
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.35 7.61 37.16 0.28 -2.07 16
2 C 0.12 1.34 3.65 -67.49 -0.25 1.09 16
3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
4 C 0.05 0.51 5.99 -3.70 -0.02 0.49 16
5 N -0.68 -6.55 6.85 -113.50 -0.78 -7.33 16
6 C 0.05 0.46 6.70 -3.70 -0.02 0.43 16
7 C 0.08 0.89 6.63 -3.60 -0.02 0.87 16
8 N -1.01 -13.78 3.25 -106.20 -0.34 -14.12 16
9 S 2.59 47.05 4.85 -107.50 -0.52 46.53 16
10 O -0.97 -20.20 16.32 -57.54 -0.94 -21.14 16
11 O -0.96 -19.19 13.65 -57.54 -0.79 -19.98 16
12 C -0.59 -11.48 5.86 37.16 0.22 -11.26 16
13 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16
14 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16
15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16
16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
17 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16
18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16
19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
23 H 0.06 0.93 4.86 -51.93 -0.25 0.68 16
24 H 0.10 1.48 6.43 -51.93 -0.33 1.14 16
25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
26 H 0.08 0.93 8.12 -51.93 -0.42 0.50 16
27 H 0.34 2.71 8.83 -39.29 -0.35 2.36 16
28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.10 1.32 6.62 -51.93 -0.34 0.97 16
31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
32 H 0.12 2.09 6.66 -51.93 -0.35 1.74 16
33 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16
34 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16
35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16
36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 295.92 15.07 4.46 4.46
Total: -1.00 -33.40 295.92 -8.95 -42.35
By element:
Atomic # 1 Polarization: 7.28 SS G_CDS: -5.39 Total: 1.89 kcal
Atomic # 6 Polarization: -22.69 SS G_CDS: -0.37 Total: -23.05 kcal
Atomic # 7 Polarization: -46.83 SS G_CDS: -0.39 Total: -47.22 kcal
Atomic # 8 Polarization: -39.40 SS G_CDS: -1.72 Total: -41.12 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal
Atomic # 16 Polarization: 47.05 SS G_CDS: -0.52 Total: 46.53 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -33.40 -8.95 -42.35 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000193361032.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.090 kcal
(2) G-P(sol) polarization free energy of solvation -33.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.487 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.438 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds