Wall clock time and date at job start Mon Mar 30 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.62610 * 2 1 4 4 C 1.53241 * 109.62716 * 120.38233 * 2 1 3 5 5 N 1.46903 * 109.34182 * 173.54422 * 4 2 1 6 6 C 1.46899 * 111.26254 * 296.89572 * 5 4 2 7 7 C 1.53242 * 109.34471 * 63.10823 * 6 5 4 8 8 N 1.47073 * 109.63251 * 239.41170 * 2 1 3 9 9 S 1.65598 * 120.87966 * 9.13013 * 8 2 1 10 10 O 1.42106 * 104.27731 * 192.51735 * 9 8 2 11 11 O 1.42100 * 104.27863 * 320.37160 * 9 8 2 12 12 C 1.81406 * 104.45069 * 76.44624 * 9 8 2 13 13 C 1.52999 * 109.47048 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.46875 * 180.02562 * 13 12 9 15 15 H 1.07998 * 119.99792 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99822 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99799 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99895 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47201 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47505 * 119.99581 * 18 16 14 21 21 H 1.48498 * 109.46966 * 239.99717 * 18 16 14 22 22 H 1.09000 * 109.47448 * 308.08503 * 1 2 3 23 23 H 1.09005 * 109.46755 * 68.09187 * 1 2 3 24 24 H 1.08999 * 109.46875 * 188.08364 * 1 2 3 25 25 H 1.09001 * 109.49664 * 293.50677 * 4 2 1 26 26 H 1.09006 * 109.49324 * 53.58422 * 4 2 1 27 27 H 1.00896 * 110.99918 * 61.03986 * 5 4 2 28 28 H 1.09000 * 109.50012 * 303.13907 * 6 5 4 29 29 H 1.09004 * 109.49190 * 183.06331 * 6 5 4 30 30 H 1.08997 * 109.63292 * 186.45790 * 7 6 5 31 31 H 1.09001 * 109.62598 * 65.87050 * 7 6 5 32 32 H 1.08994 * 109.46580 * 299.99988 * 12 9 8 33 33 H 1.09001 * 109.46890 * 60.00330 * 12 9 8 34 34 H 1.09003 * 109.47106 * 300.00018 * 13 12 9 35 35 H 1.09001 * 109.47151 * 59.99941 * 13 12 9 36 36 H 0.97003 * 120.00151 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7300 1.2452 5 7 3.5055 -0.8623 1.1626 6 6 3.9016 -1.6870 0.0133 7 6 3.4630 -0.9962 -1.2824 8 7 2.0241 -0.7049 -1.1925 9 16 0.9880 -1.1580 -2.4022 10 8 1.7535 -2.0465 -3.2047 11 8 -0.1746 -1.6055 -1.7186 12 6 0.6448 0.3785 -3.3034 13 6 -0.3128 0.0878 -4.4607 14 6 -0.5975 1.3642 -5.2098 15 1 -0.1406 2.2899 -4.8924 16 6 -1.4411 1.3500 -6.3003 17 7 -1.9969 0.2227 -6.6870 18 14 -1.7933 2.9319 -7.2292 19 1 -1.0504 4.0524 -6.5983 20 1 -1.3601 2.7835 -8.6418 21 1 -3.2499 3.2177 -7.1856 22 1 -0.3634 0.6339 0.8089 23 1 -0.3633 0.3835 -0.9535 24 1 -0.3633 -1.0175 0.1445 25 1 1.7809 -0.1601 2.1361 26 1 1.5923 -1.7203 1.2993 27 1 3.9491 0.0433 1.1278 28 1 3.4234 -2.6639 0.0845 29 1 4.9845 -1.8111 0.0107 30 1 3.6510 -1.6548 -2.1303 31 1 4.0178 -0.0663 -1.4074 32 1 0.1895 1.1021 -2.6274 33 1 1.5766 0.7848 -3.6968 34 1 0.1430 -0.6358 -5.1366 35 1 -1.2447 -0.3189 -4.0678 36 1 -2.5902 0.2126 -7.4544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193361032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:13 Heat of formation + Delta-G solvation = -93.280296 kcal Electronic energy + Delta-G solvation = -18922.678512 eV Core-core repulsion = 15953.882371 eV Total energy + Delta-G solvation = -2968.796141 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01131 -38.40497 -37.03791 -35.95226 -34.62928 -33.38258 -33.08982 -28.44197 -27.68369 -25.91521 -23.66591 -23.35365 -22.24543 -19.95135 -18.96425 -18.18241 -17.55705 -17.15422 -16.57807 -16.35810 -16.17489 -15.57324 -15.49970 -15.18406 -14.79669 -14.45042 -13.87976 -13.76255 -13.59254 -13.35239 -13.11072 -12.98284 -12.85549 -12.68694 -12.36592 -12.27799 -12.19471 -12.09696 -12.00460 -11.82596 -11.63000 -11.13939 -10.69171 -10.44354 -9.13219 -8.29530 -6.44336 -0.74571 1.38768 1.39548 1.52896 1.67880 2.35348 2.80022 3.03790 3.17773 3.31163 3.60814 3.83749 3.97470 3.98990 4.13356 4.16501 4.26648 4.46939 4.61472 4.66992 4.68128 4.75640 4.84970 5.00188 5.08432 5.14785 5.21239 5.22504 5.49283 5.64409 5.65256 5.95858 6.01929 6.53106 6.69276 7.26335 8.83029 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.005260 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.126658 B = 5322.226348 C = 5436.738519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.113 3.887 3 H 0.101 0.899 4 C 0.055 3.945 5 N -0.681 5.681 6 C 0.050 3.950 7 C 0.070 3.930 8 N -0.997 5.997 9 S 2.610 3.390 10 O -1.000 7.000 11 O -0.983 6.983 12 C -0.589 4.589 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.075 0.925 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.976 3.024 19 H -0.256 1.256 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.101 0.899 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.062 0.938 27 H 0.354 0.646 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.003 0.997 35 H 0.006 0.994 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 2.635 16.046 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.006 3.994 3 H 0.119 0.881 4 C -0.077 4.077 5 N -0.310 5.310 6 C -0.082 4.082 7 C -0.057 4.057 8 N -0.838 5.838 9 S 2.710 3.290 10 O -0.991 6.991 11 O -0.973 6.973 12 C -0.721 4.721 13 C -0.016 4.016 14 C -0.579 4.579 15 H 0.093 0.907 16 C -0.202 4.202 17 N -0.574 5.574 18 Si 0.799 3.201 19 H -0.179 1.179 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.120 0.880 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.130 0.870 26 H 0.080 0.920 27 H 0.173 0.827 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.021 0.979 35 H 0.025 0.975 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.223 1.120 16.251 19.782 hybrid contribution -0.740 1.481 -1.874 2.501 sum 10.483 2.601 14.377 17.982 Atomic orbital electron populations 1.22641 0.93756 1.04987 1.03173 1.22021 0.94649 0.97021 0.85677 0.88111 1.22448 0.88121 1.00854 0.96265 1.60660 1.07449 1.20917 1.41958 1.22368 1.02334 0.96590 0.86873 1.22482 0.79149 1.02398 1.01643 1.57786 1.19003 1.74616 1.32350 1.04846 0.73333 0.77188 0.73674 1.93449 1.71179 1.63297 1.71127 1.93573 1.51286 1.80929 1.71553 1.30458 1.09748 1.20708 1.11176 1.18800 0.92859 0.98206 0.91752 1.21528 1.28443 0.94715 1.13195 0.90733 1.26133 0.95299 1.00452 0.98282 1.70108 1.31687 1.28416 1.27196 0.85241 0.78218 0.78587 0.78067 1.17931 1.20266 1.20202 0.88003 0.93904 0.90456 0.86971 0.91965 0.82678 0.92136 0.86916 0.89379 0.88823 0.84267 0.84642 0.97883 0.97533 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.58 7.61 71.98 0.55 -4.03 16 2 C 0.11 2.31 3.65 44.96 0.16 2.47 16 3 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 4 C 0.05 0.95 5.99 86.38 0.52 1.46 16 5 N -0.68 -10.68 6.85 -512.99 -3.52 -14.20 16 6 C 0.05 0.87 6.70 86.38 0.58 1.45 16 7 C 0.07 1.46 6.63 86.35 0.57 2.03 16 8 N -1.00 -25.87 3.25 -489.90 -1.59 -27.46 16 9 S 2.61 96.41 4.85 -56.49 -0.27 96.13 16 10 O -1.00 -43.03 16.32 -127.65 -2.08 -45.11 16 11 O -0.98 -40.71 13.65 -127.65 -1.74 -42.45 16 12 C -0.59 -22.99 5.86 71.98 0.42 -22.57 16 13 C 0.02 1.21 4.98 29.85 0.15 1.36 16 14 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 15 H 0.07 3.87 7.74 -2.91 -0.02 3.84 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 17 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 18 Si 0.98 43.34 29.54 68.60 2.03 45.37 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 22 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.04 1.22 4.86 -2.38 -0.01 1.21 16 24 H 0.08 2.27 6.43 -2.39 -0.02 2.26 16 25 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.33 8.12 -2.38 -0.02 1.32 16 27 H 0.35 4.04 8.83 -89.70 -0.79 3.24 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.09 2.16 6.62 -2.39 -0.02 2.15 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.14 4.78 6.66 -2.39 -0.02 4.77 16 33 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 34 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.56 295.92 -2.97 -77.52 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.28 Total: 14.73 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 3.65 Total: -47.57 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.82 Total: -98.64 kcal Atomic # 8 Polarization: -83.73 SS G_CDS: -3.83 Total: -87.56 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 96.41 SS G_CDS: -0.27 Total: 96.13 kcal Total: -74.56 -2.97 -77.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193361032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds