Wall clock time and date at job start Mon Mar 30 2020 05:07:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.62610 * 2 1
4 4 C 1.53241 * 109.62716 * 120.38233 * 2 1 3
5 5 N 1.46903 * 109.34182 * 173.54422 * 4 2 1
6 6 C 1.46899 * 111.26254 * 296.89572 * 5 4 2
7 7 C 1.53242 * 109.34471 * 63.10823 * 6 5 4
8 8 N 1.47073 * 109.63251 * 239.41170 * 2 1 3
9 9 S 1.65598 * 120.87966 * 9.13013 * 8 2 1
10 10 O 1.42106 * 104.27731 * 192.51735 * 9 8 2
11 11 O 1.42100 * 104.27863 * 320.37160 * 9 8 2
12 12 C 1.81406 * 104.45069 * 76.44624 * 9 8 2
13 13 C 1.52999 * 109.47048 * 179.97438 * 12 9 8
14 14 C 1.50706 * 109.46875 * 180.02562 * 13 12 9
15 15 H 1.07998 * 119.99792 * 0.02562 * 14 13 12
16 16 C 1.37879 * 119.99822 * 180.02562 * 14 13 12
17 17 N 1.31508 * 119.99799 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99895 * 180.02562 * 16 14 13
19 19 H 1.48501 * 109.47201 * 359.97438 * 18 16 14
20 20 H 1.48500 * 109.47505 * 119.99581 * 18 16 14
21 21 H 1.48498 * 109.46966 * 239.99717 * 18 16 14
22 22 H 1.09000 * 109.47448 * 308.08503 * 1 2 3
23 23 H 1.09005 * 109.46755 * 68.09187 * 1 2 3
24 24 H 1.08999 * 109.46875 * 188.08364 * 1 2 3
25 25 H 1.09001 * 109.49664 * 293.50677 * 4 2 1
26 26 H 1.09006 * 109.49324 * 53.58422 * 4 2 1
27 27 H 1.00896 * 110.99918 * 61.03986 * 5 4 2
28 28 H 1.09000 * 109.50012 * 303.13907 * 6 5 4
29 29 H 1.09004 * 109.49190 * 183.06331 * 6 5 4
30 30 H 1.08997 * 109.63292 * 186.45790 * 7 6 5
31 31 H 1.09001 * 109.62598 * 65.87050 * 7 6 5
32 32 H 1.08994 * 109.46580 * 299.99988 * 12 9 8
33 33 H 1.09001 * 109.46890 * 60.00330 * 12 9 8
34 34 H 1.09003 * 109.47106 * 300.00018 * 13 12 9
35 35 H 1.09001 * 109.47151 * 59.99941 * 13 12 9
36 36 H 0.97003 * 120.00151 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8961 1.0267 0.0000
4 6 2.0447 -0.7300 1.2452
5 7 3.5055 -0.8623 1.1626
6 6 3.9016 -1.6870 0.0133
7 6 3.4630 -0.9962 -1.2824
8 7 2.0241 -0.7049 -1.1925
9 16 0.9880 -1.1580 -2.4022
10 8 1.7535 -2.0465 -3.2047
11 8 -0.1746 -1.6055 -1.7186
12 6 0.6448 0.3785 -3.3034
13 6 -0.3128 0.0878 -4.4607
14 6 -0.5975 1.3642 -5.2098
15 1 -0.1406 2.2899 -4.8924
16 6 -1.4411 1.3500 -6.3003
17 7 -1.9969 0.2227 -6.6870
18 14 -1.7933 2.9319 -7.2292
19 1 -1.0504 4.0524 -6.5983
20 1 -1.3601 2.7835 -8.6418
21 1 -3.2499 3.2177 -7.1856
22 1 -0.3634 0.6339 0.8089
23 1 -0.3633 0.3835 -0.9535
24 1 -0.3633 -1.0175 0.1445
25 1 1.7809 -0.1601 2.1361
26 1 1.5923 -1.7203 1.2993
27 1 3.9491 0.0433 1.1278
28 1 3.4234 -2.6639 0.0845
29 1 4.9845 -1.8111 0.0107
30 1 3.6510 -1.6548 -2.1303
31 1 4.0178 -0.0663 -1.4074
32 1 0.1895 1.1021 -2.6274
33 1 1.5766 0.7848 -3.6968
34 1 0.1430 -0.6358 -5.1366
35 1 -1.2447 -0.3189 -4.0678
36 1 -2.5902 0.2126 -7.4544
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000193361032.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:13
Heat of formation + Delta-G solvation = -93.280296 kcal
Electronic energy + Delta-G solvation = -18922.678512 eV
Core-core repulsion = 15953.882371 eV
Total energy + Delta-G solvation = -2968.796141 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.114 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.01131 -38.40497 -37.03791 -35.95226 -34.62928 -33.38258 -33.08982 -28.44197
-27.68369 -25.91521 -23.66591 -23.35365 -22.24543 -19.95135 -18.96425 -18.18241
-17.55705 -17.15422 -16.57807 -16.35810 -16.17489 -15.57324 -15.49970 -15.18406
-14.79669 -14.45042 -13.87976 -13.76255 -13.59254 -13.35239 -13.11072 -12.98284
-12.85549 -12.68694 -12.36592 -12.27799 -12.19471 -12.09696 -12.00460 -11.82596
-11.63000 -11.13939 -10.69171 -10.44354 -9.13219 -8.29530 -6.44336 -0.74571
1.38768 1.39548 1.52896 1.67880 2.35348 2.80022 3.03790 3.17773
3.31163 3.60814 3.83749 3.97470 3.98990 4.13356 4.16501 4.26648
4.46939 4.61472 4.66992 4.68128 4.75640 4.84970 5.00188 5.08432
5.14785 5.21239 5.22504 5.49283 5.64409 5.65256 5.95858 6.01929
6.53106 6.69276 7.26335 8.83029
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.037368 B = 0.005260 C = 0.005149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 749.126658 B = 5322.226348 C = 5436.738519
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.113 3.887
3 H 0.101 0.899
4 C 0.055 3.945
5 N -0.681 5.681
6 C 0.050 3.950
7 C 0.070 3.930
8 N -0.997 5.997
9 S 2.610 3.390
10 O -1.000 7.000
11 O -0.983 6.983
12 C -0.589 4.589
13 C 0.023 3.977
14 C -0.540 4.540
15 H 0.075 0.925
16 C -0.003 4.003
17 N -0.935 5.935
18 Si 0.976 3.024
19 H -0.256 1.256
20 H -0.277 1.277
21 H -0.276 1.276
22 H 0.101 0.899
23 H 0.042 0.958
24 H 0.077 0.923
25 H 0.112 0.888
26 H 0.062 0.938
27 H 0.354 0.646
28 H 0.060 0.940
29 H 0.113 0.887
30 H 0.088 0.912
31 H 0.094 0.906
32 H 0.139 0.861
33 H 0.135 0.865
34 H 0.003 0.997
35 H 0.006 0.994
36 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.587 2.635 16.046 19.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.246 4.246
2 C 0.006 3.994
3 H 0.119 0.881
4 C -0.077 4.077
5 N -0.310 5.310
6 C -0.082 4.082
7 C -0.057 4.057
8 N -0.838 5.838
9 S 2.710 3.290
10 O -0.991 6.991
11 O -0.973 6.973
12 C -0.721 4.721
13 C -0.016 4.016
14 C -0.579 4.579
15 H 0.093 0.907
16 C -0.202 4.202
17 N -0.574 5.574
18 Si 0.799 3.201
19 H -0.179 1.179
20 H -0.203 1.203
21 H -0.202 1.202
22 H 0.120 0.880
23 H 0.061 0.939
24 H 0.095 0.905
25 H 0.130 0.870
26 H 0.080 0.920
27 H 0.173 0.827
28 H 0.079 0.921
29 H 0.131 0.869
30 H 0.106 0.894
31 H 0.112 0.888
32 H 0.157 0.843
33 H 0.154 0.846
34 H 0.021 0.979
35 H 0.025 0.975
36 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 11.223 1.120 16.251 19.782
hybrid contribution -0.740 1.481 -1.874 2.501
sum 10.483 2.601 14.377 17.982
Atomic orbital electron populations
1.22641 0.93756 1.04987 1.03173 1.22021 0.94649 0.97021 0.85677
0.88111 1.22448 0.88121 1.00854 0.96265 1.60660 1.07449 1.20917
1.41958 1.22368 1.02334 0.96590 0.86873 1.22482 0.79149 1.02398
1.01643 1.57786 1.19003 1.74616 1.32350 1.04846 0.73333 0.77188
0.73674 1.93449 1.71179 1.63297 1.71127 1.93573 1.51286 1.80929
1.71553 1.30458 1.09748 1.20708 1.11176 1.18800 0.92859 0.98206
0.91752 1.21528 1.28443 0.94715 1.13195 0.90733 1.26133 0.95299
1.00452 0.98282 1.70108 1.31687 1.28416 1.27196 0.85241 0.78218
0.78587 0.78067 1.17931 1.20266 1.20202 0.88003 0.93904 0.90456
0.86971 0.91965 0.82678 0.92136 0.86916 0.89379 0.88823 0.84267
0.84642 0.97883 0.97533 0.92308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.58 7.61 71.98 0.55 -4.03 16
2 C 0.11 2.31 3.65 44.96 0.16 2.47 16
3 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16
4 C 0.05 0.95 5.99 86.38 0.52 1.46 16
5 N -0.68 -10.68 6.85 -512.99 -3.52 -14.20 16
6 C 0.05 0.87 6.70 86.38 0.58 1.45 16
7 C 0.07 1.46 6.63 86.35 0.57 2.03 16
8 N -1.00 -25.87 3.25 -489.90 -1.59 -27.46 16
9 S 2.61 96.41 4.85 -56.49 -0.27 96.13 16
10 O -1.00 -43.03 16.32 -127.65 -2.08 -45.11 16
11 O -0.98 -40.71 13.65 -127.65 -1.74 -42.45 16
12 C -0.59 -22.99 5.86 71.98 0.42 -22.57 16
13 C 0.02 1.21 4.98 29.85 0.15 1.36 16
14 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16
15 H 0.07 3.87 7.74 -2.91 -0.02 3.84 16
16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16
17 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16
18 Si 0.98 43.34 29.54 68.60 2.03 45.37 16
19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16
20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16
21 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16
22 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
23 H 0.04 1.22 4.86 -2.38 -0.01 1.21 16
24 H 0.08 2.27 6.43 -2.39 -0.02 2.26 16
25 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16
26 H 0.06 1.33 8.12 -2.38 -0.02 1.32 16
27 H 0.35 4.04 8.83 -89.70 -0.79 3.24 16
28 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16
29 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16
30 H 0.09 2.16 6.62 -2.39 -0.02 2.15 16
31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.14 4.78 6.66 -2.39 -0.02 4.77 16
33 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16
34 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16
35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
36 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16
Total: -1.00 -74.56 295.92 -2.97 -77.52
By element:
Atomic # 1 Polarization: 14.45 SS G_CDS: 0.28 Total: 14.73 kcal
Atomic # 6 Polarization: -51.21 SS G_CDS: 3.65 Total: -47.57 kcal
Atomic # 7 Polarization: -93.81 SS G_CDS: -4.82 Total: -98.64 kcal
Atomic # 8 Polarization: -83.73 SS G_CDS: -3.83 Total: -87.56 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal
Atomic # 16 Polarization: 96.41 SS G_CDS: -0.27 Total: 96.13 kcal
Total: -74.56 -2.97 -77.52 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000193361032.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal
(2) G-P(sol) polarization free energy of solvation -74.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.315 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds