Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99316 * 2 1 4 4 C 1.34767 * 120.00568 * 180.02562 * 2 1 3 5 5 O 1.21369 * 119.99722 * 354.21122 * 4 2 1 6 6 C 1.49274 * 120.00203 * 174.21391 * 4 2 1 7 7 O 1.21388 * 119.99773 * 356.11136 * 6 4 2 8 8 N 1.34774 * 120.00030 * 176.11449 * 6 4 2 9 9 C 1.38947 * 120.00096 * 184.84458 * 8 6 4 10 10 C 1.39570 * 119.83923 * 144.60891 * 9 8 6 11 11 C 1.36322 * 120.16147 * 180.29653 * 10 9 8 12 12 C 1.40922 * 119.83465 * 359.47771 * 11 10 9 13 13 C 1.41065 * 120.16159 * 180.22635 * 12 11 10 14 14 H 1.07995 * 120.00232 * 203.02178 * 13 12 11 15 15 C 1.39981 * 119.99610 * 23.01871 * 13 12 11 16 16 N 1.30828 * 120.00258 * 21.38445 * 15 13 12 17 17 Si 1.86799 * 119.99827 * 201.37827 * 15 13 12 18 18 H 1.48492 * 109.47496 * 94.99392 * 17 15 13 19 19 H 1.48503 * 109.47235 * 214.99365 * 17 15 13 20 20 H 1.48504 * 109.47268 * 334.99013 * 17 15 13 21 21 C 1.40917 * 119.67749 * 0.52098 * 12 11 10 22 22 C 1.36322 * 119.83699 * 359.72806 * 21 12 11 23 23 H 1.09005 * 109.46719 * 239.99725 * 1 2 3 24 24 H 1.09004 * 109.47515 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47039 * 120.00300 * 1 2 3 26 26 H 1.08996 * 109.47095 * 265.26257 * 3 2 1 27 27 H 1.08997 * 109.47298 * 25.27184 * 3 2 1 28 28 H 1.09005 * 109.46474 * 145.26692 * 3 2 1 29 29 H 0.97004 * 120.00386 * 4.84316 * 8 6 4 30 30 H 1.07999 * 119.91886 * 0.02562 * 10 9 8 31 31 H 1.08004 * 120.08239 * 179.71995 * 11 10 9 32 32 H 0.97001 * 119.99989 * 179.97438 * 16 15 13 33 33 H 1.08007 * 120.07994 * 179.71522 * 21 12 11 34 34 H 1.08002 * 119.92014 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1389 -1.1670 -0.0005 5 8 1.5368 -2.2155 0.1050 6 6 3.6260 -1.1702 -0.1308 7 8 4.2219 -0.1275 -0.3072 8 7 4.3068 -2.3307 -0.0528 9 6 5.6961 -2.3238 -0.0730 10 6 6.4064 -3.2517 0.6903 11 6 7.7695 -3.2469 0.6800 12 6 8.4614 -2.3092 -0.1123 13 6 9.8719 -2.3012 -0.1318 14 1 10.4031 -1.4036 -0.4118 15 6 10.5831 -3.4569 0.2120 16 7 10.0021 -4.6271 0.1438 17 14 12.3618 -3.3282 0.7678 18 1 12.4149 -3.2821 2.2511 19 1 13.1190 -4.5098 0.2820 20 1 12.9659 -2.0906 0.2121 21 6 7.7375 -1.3755 -0.8803 22 6 6.3746 -1.3888 -0.8562 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 2.4525 1.5411 -1.0241 27 1 1.5742 2.0481 0.4387 28 1 3.1105 1.1613 0.5856 29 1 3.8270 -3.1708 0.0175 30 1 5.8747 -3.9724 1.2939 31 1 8.3179 -3.9626 1.2747 32 1 10.4951 -5.4280 0.3817 33 1 8.2612 -0.6509 -1.4863 34 1 5.8184 -0.6740 -1.4446 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193956672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = -33.231154 kcal Electronic energy + Delta-G solvation = -18932.585619 eV Core-core repulsion = 15830.949453 eV Total energy + Delta-G solvation = -3101.636166 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.61414 -38.69436 -37.18995 -35.92007 -34.41787 -33.00332 -29.64677 -29.19639 -28.37523 -26.86120 -25.25396 -23.02151 -21.45092 -20.53370 -19.41227 -17.65607 -17.39745 -16.84048 -16.16162 -15.98433 -15.25536 -15.06519 -14.41746 -14.00448 -13.87223 -13.21777 -12.92422 -12.76228 -12.74051 -12.57968 -12.31274 -12.04354 -11.90567 -11.51890 -11.21510 -11.11311 -10.90886 -10.60725 -10.10090 -9.78664 -9.45654 -9.03666 -8.87929 -8.69851 -7.60786 -7.12889 -6.88211 -4.36107 1.59421 2.51034 2.70406 3.02314 3.06132 3.07112 3.12080 3.56820 3.80241 3.86366 4.52152 4.73808 4.98983 5.13133 5.25265 5.54605 5.62355 5.63881 5.92003 6.16230 6.24932 6.37359 6.68201 6.80442 6.95590 7.00365 7.09388 7.20258 7.51535 7.54221 7.70851 7.89322 7.97055 8.18830 8.20394 8.47573 8.57108 8.79584 8.91229 10.04939 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.054360 B = 0.003958 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.964091 B = 7073.314932 C = 7429.545381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.598 5.598 3 C 0.077 3.923 4 C 0.507 3.493 5 O -0.528 6.528 6 C 0.485 3.515 7 O -0.514 6.514 8 N -0.609 5.609 9 C -0.028 4.028 10 C -0.101 4.101 11 C -0.160 4.160 12 C 0.111 3.889 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.782 5.782 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.260 1.260 21 C -0.222 4.222 22 C -0.068 4.068 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.407 0.593 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.283 0.717 33 H 0.096 0.904 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 5.850 0.946 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.332 5.332 3 C -0.065 4.065 4 C 0.290 3.710 5 O -0.404 6.404 6 C 0.267 3.733 7 O -0.392 6.392 8 N -0.252 5.252 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.180 4.180 12 C 0.108 3.892 13 C -0.483 4.483 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.406 5.406 17 Si 0.733 3.267 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.243 4.243 22 C -0.088 4.088 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.242 0.758 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.237 5.782 0.910 12.669 hybrid contribution 0.451 -0.442 0.240 0.676 sum -10.786 5.339 1.150 12.090 Atomic orbital electron populations 1.21725 0.78570 1.02593 1.02561 1.47598 1.07107 1.06817 1.71704 1.22249 0.97733 0.83058 1.03479 1.20419 0.88948 0.83831 0.77778 1.90725 1.70242 1.31127 1.48326 1.19822 0.87489 0.84998 0.80997 1.90689 1.69553 1.30950 1.47982 1.42643 1.06376 1.08120 1.68041 1.17141 0.79355 1.06182 1.09358 1.20236 0.94857 0.98405 0.98656 1.20855 0.91834 1.02813 1.02497 1.17692 0.93327 0.89957 0.88212 1.19635 0.91562 0.97644 1.39453 0.90061 1.25988 1.01063 0.94622 0.92586 1.69843 1.39009 0.98893 1.32852 0.86291 0.81457 0.79101 0.79898 1.19193 1.20220 1.18402 1.20633 0.92852 1.05064 1.05704 1.20377 0.94309 0.97199 0.96870 0.91767 0.90286 0.91893 0.91944 0.91842 0.88311 0.75807 0.88950 0.86205 0.90609 0.88565 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.17 59.85 0.61 1.43 16 2 N -0.60 -7.68 3.27 -190.09 -0.62 -8.30 16 3 C 0.08 0.87 9.25 59.85 0.55 1.42 16 4 C 0.51 8.14 7.72 -11.67 -0.09 8.05 16 5 O -0.53 -9.25 16.49 5.48 0.09 -9.16 16 6 C 0.49 8.84 7.55 -11.67 -0.09 8.75 16 7 O -0.51 -10.05 10.74 5.46 0.06 -9.99 16 8 N -0.61 -11.60 5.28 -10.20 -0.05 -11.65 16 9 C -0.03 -0.63 6.30 -83.64 -0.53 -1.16 16 10 C -0.10 -2.33 9.90 -39.77 -0.39 -2.72 16 11 C -0.16 -4.06 8.66 -39.26 -0.34 -4.40 16 12 C 0.11 2.91 5.58 -106.80 -0.60 2.32 16 13 C -0.45 -11.77 9.02 -37.86 -0.34 -12.11 16 14 H 0.08 2.03 7.93 -52.49 -0.42 1.61 16 15 C 0.08 1.87 5.07 -17.33 -0.09 1.78 16 16 N -0.78 -19.50 11.07 55.55 0.61 -18.88 16 17 Si 0.91 18.05 29.61 -169.99 -5.03 13.02 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.22 -5.52 9.74 -39.26 -0.38 -5.90 16 22 C -0.07 -1.60 8.61 -39.78 -0.34 -1.94 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.50 7.73 -51.93 -0.40 0.10 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 27 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 28 H 0.10 1.34 5.88 -51.93 -0.31 1.03 16 29 H 0.41 6.93 8.29 -40.82 -0.34 6.59 16 30 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.12 3.09 6.17 -52.48 -0.32 2.77 16 32 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 33 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 34 H 0.11 2.45 6.21 -52.49 -0.33 2.13 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -28.96 294.21 -6.30 -35.26 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.76 Total: 9.73 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.03 Total: -4.46 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.06 Total: -38.84 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.15 Total: -19.15 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.96 -6.30 -35.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193956672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.031 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds