Wall clock time and date at job start Mon Mar 30 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99316 * 2 1 4 4 C 1.34767 * 120.00568 * 180.02562 * 2 1 3 5 5 O 1.21369 * 119.99722 * 354.21122 * 4 2 1 6 6 C 1.49274 * 120.00203 * 174.21391 * 4 2 1 7 7 O 1.21388 * 119.99773 * 356.11136 * 6 4 2 8 8 N 1.34774 * 120.00030 * 176.11449 * 6 4 2 9 9 C 1.38947 * 120.00096 * 184.84458 * 8 6 4 10 10 C 1.39570 * 119.83923 * 144.60891 * 9 8 6 11 11 C 1.36322 * 120.16147 * 180.29653 * 10 9 8 12 12 C 1.40922 * 119.83465 * 359.47771 * 11 10 9 13 13 C 1.41065 * 120.16159 * 180.22635 * 12 11 10 14 14 H 1.07995 * 120.00232 * 203.02178 * 13 12 11 15 15 C 1.39981 * 119.99610 * 23.01871 * 13 12 11 16 16 N 1.30828 * 120.00258 * 21.38445 * 15 13 12 17 17 Si 1.86799 * 119.99827 * 201.37827 * 15 13 12 18 18 H 1.48492 * 109.47496 * 94.99392 * 17 15 13 19 19 H 1.48503 * 109.47235 * 214.99365 * 17 15 13 20 20 H 1.48504 * 109.47268 * 334.99013 * 17 15 13 21 21 C 1.40917 * 119.67749 * 0.52098 * 12 11 10 22 22 C 1.36322 * 119.83699 * 359.72806 * 21 12 11 23 23 H 1.09005 * 109.46719 * 239.99725 * 1 2 3 24 24 H 1.09004 * 109.47515 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47039 * 120.00300 * 1 2 3 26 26 H 1.08996 * 109.47095 * 265.26257 * 3 2 1 27 27 H 1.08997 * 109.47298 * 25.27184 * 3 2 1 28 28 H 1.09005 * 109.46474 * 145.26692 * 3 2 1 29 29 H 0.97004 * 120.00386 * 4.84316 * 8 6 4 30 30 H 1.07999 * 119.91886 * 0.02562 * 10 9 8 31 31 H 1.08004 * 120.08239 * 179.71995 * 11 10 9 32 32 H 0.97001 * 119.99989 * 179.97438 * 16 15 13 33 33 H 1.08007 * 120.07994 * 179.71522 * 21 12 11 34 34 H 1.08002 * 119.92014 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1389 -1.1670 -0.0005 5 8 1.5368 -2.2155 0.1050 6 6 3.6260 -1.1702 -0.1308 7 8 4.2219 -0.1275 -0.3072 8 7 4.3068 -2.3307 -0.0528 9 6 5.6961 -2.3238 -0.0730 10 6 6.4064 -3.2517 0.6903 11 6 7.7695 -3.2469 0.6800 12 6 8.4614 -2.3092 -0.1123 13 6 9.8719 -2.3012 -0.1318 14 1 10.4031 -1.4036 -0.4118 15 6 10.5831 -3.4569 0.2120 16 7 10.0021 -4.6271 0.1438 17 14 12.3618 -3.3282 0.7678 18 1 12.4149 -3.2821 2.2511 19 1 13.1190 -4.5098 0.2820 20 1 12.9659 -2.0906 0.2121 21 6 7.7375 -1.3755 -0.8803 22 6 6.3746 -1.3888 -0.8562 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 2.4525 1.5411 -1.0241 27 1 1.5742 2.0481 0.4387 28 1 3.1105 1.1613 0.5856 29 1 3.8270 -3.1708 0.0175 30 1 5.8747 -3.9724 1.2939 31 1 8.3179 -3.9626 1.2747 32 1 10.4951 -5.4280 0.3817 33 1 8.2612 -0.6509 -1.4863 34 1 5.8184 -0.6740 -1.4446 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193956672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:34 Heat of formation + Delta-G solvation = -51.683283 kcal Electronic energy + Delta-G solvation = -18933.385763 eV Core-core repulsion = 15830.949453 eV Total energy + Delta-G solvation = -3102.436310 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.00301 -40.18551 -38.88067 -37.15483 -36.03299 -34.73907 -31.51790 -30.99137 -29.31857 -28.07555 -26.86881 -24.48923 -23.22938 -22.26243 -20.85579 -19.33171 -18.93138 -18.26817 -17.48133 -17.35073 -16.99726 -16.37362 -15.88291 -15.64997 -15.14572 -14.83930 -14.50175 -14.18362 -14.02909 -13.75076 -13.55761 -13.51590 -13.30004 -13.10020 -12.81839 -12.64601 -12.40520 -12.31368 -11.84064 -11.58339 -11.22068 -10.70517 -10.30516 -9.89515 -9.50530 -8.97617 -8.69659 -6.28920 0.19598 0.90606 1.13511 1.36200 1.40535 1.52866 1.54266 2.12737 2.20826 2.55443 2.69167 3.34791 3.70965 4.23098 4.36218 4.37660 4.47394 4.49766 4.73294 4.86025 4.87073 4.98914 5.06796 5.12309 5.25346 5.29100 5.37800 5.62809 5.75823 5.87499 5.97925 6.05438 6.30819 6.39449 6.61160 6.70883 6.88760 6.91315 7.10394 8.26270 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.054360 B = 0.003958 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.964091 B = 7073.314932 C = 7429.545381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.588 5.588 3 C 0.075 3.925 4 C 0.508 3.492 5 O -0.546 6.546 6 C 0.486 3.514 7 O -0.527 6.527 8 N -0.612 5.612 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.179 4.179 12 C 0.082 3.918 13 C -0.491 4.491 14 H 0.078 0.922 15 C 0.039 3.961 16 N -0.811 5.811 17 Si 0.983 3.017 18 H -0.262 1.262 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.238 4.238 22 C -0.075 4.075 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.417 0.583 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.292 0.708 33 H 0.100 0.900 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 6.608 1.385 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.320 5.320 3 C -0.066 4.066 4 C 0.290 3.710 5 O -0.425 6.425 6 C 0.269 3.731 7 O -0.405 6.405 8 N -0.256 5.256 9 C -0.109 4.109 10 C -0.122 4.122 11 C -0.199 4.199 12 C 0.079 3.921 13 C -0.520 4.520 14 H 0.096 0.904 15 C -0.178 4.178 16 N -0.436 5.436 17 Si 0.803 3.197 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.182 1.182 21 C -0.258 4.258 22 C -0.095 4.095 23 H 0.084 0.916 24 H 0.136 0.864 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.254 0.746 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.547 6.570 1.341 14.226 hybrid contribution 0.638 -0.580 0.076 0.866 sum -11.909 5.990 1.416 13.406 Atomic orbital electron populations 1.22029 0.75954 1.05244 1.02686 1.47776 1.08698 1.06150 1.69404 1.22317 0.97655 0.83255 1.03421 1.19932 0.87603 0.84803 0.78661 1.90723 1.70004 1.31900 1.49874 1.20342 0.88807 0.84309 0.79664 1.90692 1.70400 1.31389 1.47995 1.42577 1.05057 1.09240 1.68774 1.17187 0.81050 1.04929 1.07764 1.20465 0.94266 0.98872 0.98619 1.20850 0.92859 1.03082 1.03072 1.18010 0.94092 0.90871 0.89079 1.19855 0.91928 0.98462 1.41717 0.90366 1.26801 1.05385 0.93729 0.91851 1.69868 1.40984 0.99663 1.33078 0.85178 0.75809 0.79289 0.79394 1.18616 1.19064 1.18219 1.20784 0.93595 1.05328 1.06051 1.20499 0.93969 0.97762 0.97248 0.91647 0.86439 0.91745 0.91910 0.87689 0.90780 0.74568 0.86323 0.87266 0.89683 0.88228 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.17 127.77 1.30 2.55 16 2 N -0.59 -13.53 3.27 -873.69 -2.86 -16.39 16 3 C 0.08 1.49 9.25 127.77 1.18 2.67 16 4 C 0.51 15.48 7.72 87.22 0.67 16.15 16 5 O -0.55 -18.31 16.49 -3.30 -0.05 -18.36 16 6 C 0.49 17.26 7.55 87.22 0.66 17.92 16 7 O -0.53 -20.24 10.74 -3.37 -0.04 -20.27 16 8 N -0.61 -22.84 5.28 -304.52 -1.61 -24.45 16 9 C -0.02 -0.72 6.30 38.66 0.24 -0.48 16 10 C -0.10 -4.70 9.90 22.14 0.22 -4.48 16 11 C -0.18 -9.27 8.66 22.48 0.19 -9.08 16 12 C 0.08 4.45 5.58 -21.27 -0.12 4.34 16 13 C -0.49 -26.23 9.02 23.39 0.21 -26.01 16 14 H 0.08 4.05 7.93 -2.91 -0.02 4.03 16 15 C 0.04 1.94 5.07 85.26 0.43 2.37 16 16 N -0.81 -41.08 11.07 21.83 0.24 -40.84 16 17 Si 0.98 37.09 29.61 68.60 2.03 39.13 16 18 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 C -0.24 -12.12 9.74 22.48 0.22 -11.90 16 22 C -0.07 -3.56 8.61 22.14 0.19 -3.37 16 23 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.12 0.91 7.73 -2.38 -0.02 0.89 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 27 H 0.10 1.23 7.82 -2.39 -0.02 1.21 16 28 H 0.07 1.89 5.88 -2.38 -0.01 1.88 16 29 H 0.42 13.80 8.29 -92.71 -0.77 13.03 16 30 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.11 5.81 6.17 -2.91 -0.02 5.79 16 32 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 33 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 34 H 0.11 5.19 6.21 -2.91 -0.02 5.17 16 Total: -1.00 -63.29 294.21 3.48 -59.81 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.37 Total: 30.70 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.40 Total: -9.33 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -4.23 Total: -81.67 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.09 Total: -38.64 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.13 kcal Total: -63.29 3.48 -59.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193956672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.127 kcal (2) G-P(sol) polarization free energy of solvation -63.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds