Wall clock time and date at job start Mon Mar 30 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47245 * 2 1 4 4 C 1.52996 * 109.47212 * 120.00578 * 2 1 3 5 5 N 1.46501 * 109.47102 * 176.00834 * 4 2 1 6 6 S 1.65606 * 119.99845 * 163.62652 * 5 4 2 7 7 O 1.42100 * 106.39765 * 178.54142 * 6 5 4 8 8 O 1.42099 * 106.40227 * 311.45663 * 6 5 4 9 9 C 1.76197 * 107.21776 * 64.99984 * 6 5 4 10 10 H 1.07995 * 119.99993 * 0.02562 * 9 6 5 11 11 C 1.37881 * 119.99716 * 179.97438 * 9 6 5 12 12 N 1.31511 * 119.99555 * 179.97438 * 11 9 6 13 13 Si 1.86801 * 120.00065 * 359.97438 * 11 9 6 14 14 H 1.48507 * 109.46886 * 90.00073 * 13 11 9 15 15 H 1.48493 * 109.46937 * 209.99612 * 13 11 9 16 16 H 1.48499 * 109.47238 * 330.00383 * 13 11 9 17 17 N 1.46907 * 109.46915 * 240.00088 * 2 1 3 18 18 C 1.46899 * 110.99640 * 69.00650 * 17 2 1 19 19 C 1.46900 * 110.99903 * 305.05650 * 17 2 1 20 20 C 1.53002 * 117.49439 * 259.31282 * 19 17 2 21 21 C 1.52998 * 117.49325 * 190.65584 * 19 17 2 22 22 H 1.08998 * 109.46747 * 307.20713 * 1 2 3 23 23 H 1.09000 * 109.47037 * 187.21220 * 1 2 3 24 24 H 1.09002 * 109.47099 * 67.21064 * 1 2 3 25 25 H 1.09006 * 109.47019 * 296.00769 * 4 2 1 26 26 H 1.08999 * 109.47448 * 56.00436 * 4 2 1 27 27 H 0.96995 * 120.00046 * 343.62753 * 5 4 2 28 28 H 0.97004 * 119.99536 * 180.02562 * 12 11 9 29 29 H 1.09003 * 109.47422 * 56.84281 * 18 17 2 30 30 H 1.09000 * 109.47063 * 176.83789 * 18 17 2 31 31 H 1.09000 * 109.47295 * 296.83625 * 18 17 2 32 32 H 1.08992 * 115.55166 * 44.98261 * 19 17 2 33 33 H 1.09001 * 117.50058 * 359.97438 * 20 19 17 34 34 H 1.08998 * 117.50060 * 145.02738 * 20 19 17 35 35 H 1.09006 * 117.49974 * 214.97472 * 21 19 17 36 36 H 1.09000 * 117.50442 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5019 -0.8052 1.2020 6 16 4.3557 -1.1589 2.5762 7 8 5.7249 -1.2004 2.1982 8 8 3.8555 -0.2999 3.5917 9 6 3.9211 -2.7986 3.0527 10 1 3.2119 -3.3618 2.4644 11 6 4.4873 -3.3629 4.1761 12 7 4.1625 -4.5866 4.5321 13 14 5.7156 -2.3894 5.1925 14 1 4.9945 -1.6265 6.2429 15 1 6.6788 -3.3218 5.8312 16 1 6.4497 -1.4460 4.3115 17 7 2.0197 -0.6925 -1.1995 18 6 1.7319 0.0864 -2.4113 19 6 1.4524 -2.0442 -1.2954 20 6 2.3362 -3.2138 -0.8572 21 6 2.0473 -2.9871 -2.3433 22 1 -0.3633 0.6214 0.8185 23 1 -0.3633 -1.0195 0.1290 24 1 -0.3633 0.3981 -0.9475 25 1 1.7363 -0.1679 2.1378 26 1 1.6195 -1.7263 1.2856 27 1 3.9697 -0.6535 0.3659 28 1 4.5605 -4.9835 5.3226 29 1 2.1750 1.0780 -2.3197 30 1 2.1541 -0.4215 -3.2784 31 1 0.6530 0.1805 -2.5350 32 1 0.3831 -2.1203 -1.0991 33 1 3.3385 -2.9804 -0.4982 34 1 1.8480 -4.0596 -0.3730 35 1 1.3692 -3.6839 -2.8361 36 1 2.8591 -2.6044 -2.9617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229784823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:45 Heat of formation + Delta-G solvation = -47.051564 kcal Electronic energy + Delta-G solvation = -19019.199058 eV Core-core repulsion = 16052.407545 eV Total energy + Delta-G solvation = -2966.791513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.08643 -35.60392 -35.28121 -34.31046 -33.39455 -32.94608 -30.24941 -26.33791 -26.02204 -24.73008 -22.24537 -22.00353 -19.19745 -18.84510 -17.34179 -16.63280 -16.34437 -15.89130 -15.10196 -14.87731 -14.44703 -13.93135 -13.48557 -13.32089 -12.97620 -12.87971 -12.74401 -12.53965 -12.22847 -12.07134 -11.50467 -11.32225 -11.20998 -10.99544 -10.83985 -10.51820 -10.49568 -10.39763 -10.18742 -9.93469 -9.73915 -9.14466 -9.09223 -8.42625 -8.20042 -6.73829 -5.25599 2.23044 3.12261 3.22808 3.32989 3.82948 3.97311 4.01554 4.51586 4.67296 4.88965 5.06401 5.10610 5.19940 5.25188 5.31784 5.40534 5.46619 5.52932 5.74285 5.74933 5.79767 5.81981 5.90933 6.08462 6.14260 6.29036 6.31532 6.36674 6.52277 6.77368 7.11429 7.22362 7.55015 8.02524 8.29789 8.78536 10.38548 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.006960 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.772334 B = 4021.804977 C = 4361.990713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.076 3.924 3 H 0.088 0.912 4 C 0.138 3.862 5 N -1.114 6.114 6 S 2.676 3.324 7 O -1.012 7.012 8 O -1.017 7.017 9 C -1.013 5.013 10 H 0.122 0.878 11 C 0.153 3.847 12 N -0.826 5.826 13 Si 0.801 3.199 14 H -0.248 1.248 15 H -0.257 1.257 16 H -0.220 1.220 17 N -0.506 5.506 18 C 0.027 3.973 19 C -0.001 4.001 20 C -0.154 4.154 21 C -0.177 4.177 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.411 0.589 28 H 0.279 0.721 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.445 5.847 -11.874 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.034 4.034 3 H 0.106 0.894 4 C 0.011 3.989 5 N -0.871 5.871 6 S 2.778 3.222 7 O -1.002 7.002 8 O -1.007 7.007 9 C -1.147 5.147 10 H 0.140 0.860 11 C -0.066 4.066 12 N -0.455 5.455 13 Si 0.621 3.379 14 H -0.172 1.172 15 H -0.181 1.181 16 H -0.142 1.142 17 N -0.230 5.230 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.192 4.192 21 C -0.214 4.214 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.245 0.755 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.422 6.227 -11.130 14.279 hybrid contribution -0.618 -0.328 0.038 0.701 sum -7.040 5.899 -11.092 14.401 Atomic orbital electron populations 1.22409 0.97047 1.02763 1.02232 1.21957 0.92858 0.98325 0.90253 0.89353 1.21085 0.80979 1.00296 0.96571 1.55229 1.14524 1.89541 1.27840 1.01246 0.72391 0.76811 0.71782 1.93467 1.34312 1.89469 1.82955 1.93391 1.81128 1.69215 1.56963 1.30508 1.39917 1.22636 1.21634 0.86027 1.24422 0.93288 0.94106 0.94746 1.69996 1.38831 1.12956 1.23756 0.87879 0.82960 0.82673 0.84392 1.17158 1.18078 1.14195 1.61897 1.57870 1.01121 1.02121 1.22331 0.98918 0.98126 0.92758 1.22408 0.95794 0.86808 1.05975 1.23142 1.02311 0.98105 0.95651 1.23011 1.03367 1.01999 0.93029 0.91563 0.91842 0.92404 0.90514 0.91930 0.75545 0.91073 0.91553 0.91489 0.95587 0.89318 0.87260 0.88707 0.89259 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 8.48 37.16 0.32 -1.66 16 2 C 0.08 0.98 2.54 -67.71 -0.17 0.81 16 3 H 0.09 1.09 8.04 -51.93 -0.42 0.68 16 4 C 0.14 2.30 5.32 -4.04 -0.02 2.28 16 5 N -1.11 -21.50 5.92 -10.61 -0.06 -21.56 16 6 S 2.68 67.20 4.24 -107.50 -0.46 66.74 16 7 O -1.01 -27.59 16.02 -57.17 -0.92 -28.51 16 8 O -1.02 -27.36 16.29 -57.17 -0.93 -28.29 16 9 C -1.01 -28.15 10.26 30.60 0.31 -27.84 16 10 H 0.12 3.38 8.06 -52.49 -0.42 2.96 16 11 C 0.15 4.43 5.47 -17.82 -0.10 4.33 16 12 N -0.83 -23.95 13.96 55.43 0.77 -23.18 16 13 Si 0.80 20.89 26.54 -169.99 -4.51 16.38 16 14 H -0.25 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.22 -5.86 5.60 56.52 0.32 -5.55 16 17 N -0.51 -6.34 4.14 -226.90 -0.94 -7.28 16 18 C 0.03 0.27 9.21 60.06 0.55 0.82 16 19 C 0.00 -0.02 3.81 -67.71 -0.26 -0.28 16 20 C -0.15 -2.22 9.66 -26.69 -0.26 -2.48 16 21 C -0.18 -2.05 9.90 -26.69 -0.26 -2.32 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.69 6.50 -51.93 -0.34 0.35 16 24 H 0.06 0.55 6.44 -51.93 -0.33 0.21 16 25 H 0.08 1.31 7.72 -51.93 -0.40 0.91 16 26 H 0.06 1.06 6.99 -51.93 -0.36 0.70 16 27 H 0.41 7.28 8.12 -34.48 -0.28 7.00 16 28 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.07 0.64 7.54 -51.93 -0.39 0.25 16 31 H 0.03 0.24 6.58 -51.93 -0.34 -0.10 16 32 H 0.09 1.05 6.13 -51.93 -0.32 0.73 16 33 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -32.32 300.57 -7.75 -40.07 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.35 Total: 7.42 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 0.11 Total: -26.33 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.23 Total: -52.02 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -1.85 Total: -56.79 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.51 Total: 16.38 kcal Atomic # 16 Polarization: 67.20 SS G_CDS: -0.46 Total: 66.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.32 -7.75 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229784823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.983 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds