Wall clock time and date at job start Mon Mar 30 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47245 * 2 1 4 4 C 1.52996 * 109.47212 * 120.00578 * 2 1 3 5 5 N 1.46501 * 109.47102 * 176.00834 * 4 2 1 6 6 S 1.65606 * 119.99845 * 163.62652 * 5 4 2 7 7 O 1.42100 * 106.39765 * 178.54142 * 6 5 4 8 8 O 1.42099 * 106.40227 * 311.45663 * 6 5 4 9 9 C 1.76197 * 107.21776 * 64.99984 * 6 5 4 10 10 H 1.07995 * 119.99993 * 0.02562 * 9 6 5 11 11 C 1.37881 * 119.99716 * 179.97438 * 9 6 5 12 12 N 1.31511 * 119.99555 * 179.97438 * 11 9 6 13 13 Si 1.86801 * 120.00065 * 359.97438 * 11 9 6 14 14 H 1.48507 * 109.46886 * 90.00073 * 13 11 9 15 15 H 1.48493 * 109.46937 * 209.99612 * 13 11 9 16 16 H 1.48499 * 109.47238 * 330.00383 * 13 11 9 17 17 N 1.46907 * 109.46915 * 240.00088 * 2 1 3 18 18 C 1.46899 * 110.99640 * 69.00650 * 17 2 1 19 19 C 1.46900 * 110.99903 * 305.05650 * 17 2 1 20 20 C 1.53002 * 117.49439 * 259.31282 * 19 17 2 21 21 C 1.52998 * 117.49325 * 190.65584 * 19 17 2 22 22 H 1.08998 * 109.46747 * 307.20713 * 1 2 3 23 23 H 1.09000 * 109.47037 * 187.21220 * 1 2 3 24 24 H 1.09002 * 109.47099 * 67.21064 * 1 2 3 25 25 H 1.09006 * 109.47019 * 296.00769 * 4 2 1 26 26 H 1.08999 * 109.47448 * 56.00436 * 4 2 1 27 27 H 0.96995 * 120.00046 * 343.62753 * 5 4 2 28 28 H 0.97004 * 119.99536 * 180.02562 * 12 11 9 29 29 H 1.09003 * 109.47422 * 56.84281 * 18 17 2 30 30 H 1.09000 * 109.47063 * 176.83789 * 18 17 2 31 31 H 1.09000 * 109.47295 * 296.83625 * 18 17 2 32 32 H 1.08992 * 115.55166 * 44.98261 * 19 17 2 33 33 H 1.09001 * 117.50058 * 359.97438 * 20 19 17 34 34 H 1.08998 * 117.50060 * 145.02738 * 20 19 17 35 35 H 1.09006 * 117.49974 * 214.97472 * 21 19 17 36 36 H 1.09000 * 117.50442 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5019 -0.8052 1.2020 6 16 4.3557 -1.1589 2.5762 7 8 5.7249 -1.2004 2.1982 8 8 3.8555 -0.2999 3.5917 9 6 3.9211 -2.7986 3.0527 10 1 3.2119 -3.3618 2.4644 11 6 4.4873 -3.3629 4.1761 12 7 4.1625 -4.5866 4.5321 13 14 5.7156 -2.3894 5.1925 14 1 4.9945 -1.6265 6.2429 15 1 6.6788 -3.3218 5.8312 16 1 6.4497 -1.4460 4.3115 17 7 2.0197 -0.6925 -1.1995 18 6 1.7319 0.0864 -2.4113 19 6 1.4524 -2.0442 -1.2954 20 6 2.3362 -3.2138 -0.8572 21 6 2.0473 -2.9871 -2.3433 22 1 -0.3633 0.6214 0.8185 23 1 -0.3633 -1.0195 0.1290 24 1 -0.3633 0.3981 -0.9475 25 1 1.7363 -0.1679 2.1378 26 1 1.6195 -1.7263 1.2856 27 1 3.9697 -0.6535 0.3659 28 1 4.5605 -4.9835 5.3226 29 1 2.1750 1.0780 -2.3197 30 1 2.1541 -0.4215 -3.2784 31 1 0.6530 0.1805 -2.5350 32 1 0.3831 -2.1203 -1.0991 33 1 3.3385 -2.9804 -0.4982 34 1 1.8480 -4.0596 -0.3730 35 1 1.3692 -3.6839 -2.8361 36 1 2.8591 -2.6044 -2.9617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229784823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:45 Heat of formation + Delta-G solvation = -72.959689 kcal Electronic energy + Delta-G solvation = -19020.322518 eV Core-core repulsion = 16052.407545 eV Total energy + Delta-G solvation = -2967.914973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10574 -37.63268 -36.53359 -36.43102 -35.15324 -34.68294 -31.27524 -28.51522 -27.02030 -25.84200 -23.35303 -23.01663 -20.99723 -20.11120 -19.35909 -18.50628 -17.69290 -17.13618 -16.91018 -16.26910 -15.75816 -15.37922 -15.32196 -14.96953 -14.64947 -14.09011 -13.83956 -13.81691 -13.56355 -13.39527 -12.98860 -12.92997 -12.65610 -12.61169 -12.52082 -12.29206 -12.07399 -11.81930 -11.58677 -11.30866 -11.24382 -11.10894 -10.93391 -10.09122 -9.16198 -8.93056 -7.46664 0.24700 1.05970 1.15171 1.23287 1.91184 2.45653 2.64340 2.93562 2.97435 3.39251 3.81407 4.06678 4.12382 4.16411 4.26135 4.36236 4.44396 4.47935 4.62756 4.70942 4.78818 4.86791 4.88602 5.00429 5.08932 5.14484 5.17232 5.21308 5.37503 5.41002 5.45161 6.07485 6.18828 6.25634 6.49246 6.58511 8.24453 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.006960 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.772334 B = 4021.804977 C = 4361.990713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.098 0.902 4 C 0.129 3.871 5 N -1.097 6.097 6 S 2.697 3.303 7 O -1.034 7.034 8 O -1.034 7.034 9 C -1.031 5.031 10 H 0.108 0.892 11 C 0.109 3.891 12 N -0.854 5.854 13 Si 0.823 3.177 14 H -0.240 1.240 15 H -0.222 1.222 16 H -0.231 1.231 17 N -0.522 5.522 18 C 0.027 3.973 19 C 0.005 3.995 20 C -0.187 4.187 21 C -0.153 4.153 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.421 0.579 28 H 0.289 0.711 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 7.019 -13.105 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.028 4.028 3 H 0.116 0.884 4 C 0.002 3.998 5 N -0.858 5.858 6 S 2.797 3.203 7 O -1.024 7.024 8 O -1.024 7.024 9 C -1.164 5.164 10 H 0.126 0.874 11 C -0.107 4.107 12 N -0.485 5.485 13 Si 0.640 3.360 14 H -0.163 1.163 15 H -0.144 1.144 16 H -0.153 1.153 17 N -0.247 5.247 18 C -0.120 4.120 19 C -0.103 4.103 20 C -0.224 4.224 21 C -0.190 4.190 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.257 0.743 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.176 7.375 -12.355 16.079 hybrid contribution -0.442 -0.704 0.340 0.898 sum -7.617 6.671 -12.015 15.713 Atomic orbital electron populations 1.22357 0.94961 1.02901 1.03624 1.21877 0.94364 0.97995 0.88557 0.88357 1.21353 0.78963 1.00593 0.98901 1.54744 1.15749 1.88775 1.26530 1.00442 0.71964 0.75429 0.72457 1.93426 1.36032 1.89433 1.83557 1.93363 1.81419 1.68920 1.58648 1.30972 1.39502 1.24386 1.21514 0.87389 1.25128 0.94719 0.94995 0.95839 1.70017 1.39936 1.13782 1.24767 0.87529 0.82307 0.82500 0.83672 1.16308 1.14391 1.15330 1.61832 1.58480 1.01364 1.02987 1.22385 0.99952 0.98119 0.91522 1.22463 0.95822 0.86508 1.05535 1.23019 1.01359 0.99620 0.98448 1.23062 1.03272 1.01322 0.91329 0.90878 0.92212 0.90442 0.90945 0.92664 0.74342 0.90014 0.90758 0.90906 0.94239 0.88254 0.90221 0.89560 0.87188 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 8.48 71.98 0.61 -2.72 16 2 C 0.08 1.94 2.54 44.91 0.11 2.06 16 3 H 0.10 2.17 8.04 -2.39 -0.02 2.15 16 4 C 0.13 4.22 5.32 86.38 0.46 4.68 16 5 N -1.10 -42.12 5.92 -187.49 -1.11 -43.23 16 6 S 2.70 136.03 4.24 -56.49 -0.24 135.79 16 7 O -1.03 -56.51 16.02 -128.00 -2.05 -58.56 16 8 O -1.03 -55.39 16.29 -128.00 -2.08 -57.47 16 9 C -1.03 -58.51 10.26 67.74 0.69 -57.81 16 10 H 0.11 6.24 8.06 -2.91 -0.02 6.22 16 11 C 0.11 6.38 5.47 84.66 0.46 6.84 16 12 N -0.85 -49.99 13.96 21.45 0.30 -49.69 16 13 Si 0.82 41.90 26.54 68.60 1.82 43.72 16 14 H -0.24 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.22 -9.98 7.11 99.48 0.71 -9.28 16 16 H -0.23 -12.14 5.60 99.48 0.56 -11.58 16 17 N -0.52 -11.98 4.14 -871.79 -3.61 -15.59 16 18 C 0.03 0.46 9.21 127.69 1.18 1.64 16 19 C 0.01 0.12 3.81 44.92 0.17 0.29 16 20 C -0.19 -5.41 9.66 30.62 0.30 -5.11 16 21 C -0.15 -3.27 9.90 30.62 0.30 -2.96 16 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.16 6.50 -2.39 -0.02 1.15 16 24 H 0.08 1.17 6.44 -2.39 -0.02 1.15 16 25 H 0.07 2.43 7.72 -2.38 -0.02 2.41 16 26 H 0.06 1.89 6.99 -2.39 -0.02 1.87 16 27 H 0.42 14.68 8.12 -96.75 -0.79 13.90 16 28 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 30 H 0.07 1.16 7.54 -2.39 -0.02 1.14 16 31 H 0.04 0.57 6.58 -2.39 -0.02 0.56 16 32 H 0.10 2.13 6.13 -2.39 -0.01 2.12 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 2.06 7.92 -2.39 -0.02 2.04 16 Total: -1.00 -68.77 300.57 -2.54 -71.32 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.14 Total: 26.82 kcal Atomic # 6 Polarization: -57.38 SS G_CDS: 4.29 Total: -53.10 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -4.42 Total: -108.51 kcal Atomic # 8 Polarization: -111.90 SS G_CDS: -4.13 Total: -116.03 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.82 Total: 43.72 kcal Atomic # 16 Polarization: 136.03 SS G_CDS: -0.24 Total: 135.79 kcal Total: -68.77 -2.54 -71.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229784823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.644 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds