Wall clock time and date at job start Mon Mar 30 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46766 * 2 1 4 4 C 1.52998 * 109.47409 * 239.99784 * 2 1 3 5 5 N 1.46497 * 109.47250 * 294.54090 * 4 2 1 6 6 S 1.65603 * 120.00144 * 164.29358 * 5 4 2 7 7 O 1.42090 * 106.40204 * 178.26142 * 6 5 4 8 8 O 1.42101 * 106.39873 * 311.18251 * 6 5 4 9 9 C 1.76202 * 107.21628 * 64.71763 * 6 5 4 10 10 H 1.07999 * 120.00288 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99818 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99918 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00013 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.47290 * 60.00048 * 13 11 9 15 15 H 1.48506 * 109.47192 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46910 * 299.99666 * 13 11 9 17 17 N 1.46903 * 109.47161 * 119.99529 * 2 1 3 18 18 C 1.46898 * 110.99796 * 172.14574 * 17 2 1 19 19 C 1.46898 * 111.00119 * 296.10728 * 17 2 1 20 20 C 1.53004 * 117.49722 * 243.74134 * 19 17 2 21 21 C 1.53004 * 117.49366 * 175.08584 * 19 17 2 22 22 H 1.08998 * 109.47127 * 300.00033 * 1 2 3 23 23 H 1.08993 * 109.47181 * 60.00474 * 1 2 3 24 24 H 1.09001 * 109.46766 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46955 * 174.53398 * 4 2 1 26 26 H 1.09004 * 109.46854 * 54.54110 * 4 2 1 27 27 H 0.96998 * 120.00070 * 344.01158 * 5 4 2 28 28 H 0.97006 * 119.99675 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.46604 * 54.79610 * 18 17 2 30 30 H 1.09008 * 109.47059 * 174.78995 * 18 17 2 31 31 H 1.08998 * 109.47874 * 294.79189 * 18 17 2 32 32 H 1.09002 * 115.54989 * 29.41508 * 19 17 2 33 33 H 1.08999 * 117.49458 * 0.02562 * 20 19 17 34 34 H 1.08996 * 117.49602 * 145.01767 * 20 19 17 35 35 H 1.09006 * 117.49016 * 214.97547 * 21 19 17 36 36 H 1.08998 * 117.50420 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6620 -2.1352 -1.1853 6 16 1.7295 -3.0728 -2.5486 7 8 1.3470 -4.3831 -2.1539 8 8 1.0639 -2.3434 -3.5705 9 6 3.4216 -3.1722 -3.0300 10 1 4.1787 -2.6650 -2.4503 11 6 3.7792 -3.8975 -4.1467 12 7 2.8573 -4.5148 -4.8528 13 14 5.5731 -4.0035 -4.6566 14 1 6.3638 -4.6192 -3.5606 15 1 5.6916 -4.8368 -5.8801 16 1 6.0902 -2.6394 -4.9342 17 7 2.0197 -0.6924 1.1995 18 6 3.4760 -0.8764 1.1434 19 6 1.6262 0.0254 2.4193 20 6 2.7436 0.6008 3.2919 21 6 1.9605 -0.6275 3.7620 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1257 -0.6372 -1.2994 26 1 1.5991 -0.2670 -2.1365 27 1 1.3761 -2.5232 -0.3435 28 1 3.1088 -5.0248 -5.6387 29 1 3.9582 0.0883 0.9854 30 1 3.8242 -1.3073 2.0822 31 1 3.7263 -1.5467 0.3212 32 1 0.6974 0.5920 2.3524 33 1 3.7705 0.4471 2.9605 34 1 2.5498 1.5458 3.7993 35 1 1.2516 -0.4900 4.5787 36 1 2.4719 -1.5898 3.7403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229784828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:49 Heat of formation + Delta-G solvation = -57.504378 kcal Electronic energy + Delta-G solvation = -18742.884867 eV Core-core repulsion = 15775.640086 eV Total energy + Delta-G solvation = -2967.244781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.29536 -36.03105 -35.06413 -33.85185 -33.06269 -32.40143 -30.38225 -26.24730 -26.03765 -25.14561 -22.44558 -21.30833 -19.35810 -18.92208 -17.52371 -16.65110 -16.19060 -15.64572 -14.97808 -14.76762 -14.38756 -14.12068 -13.89991 -13.32894 -13.14990 -12.52108 -12.33418 -12.02349 -11.86735 -11.64482 -11.40781 -11.23079 -11.17941 -11.15527 -10.96025 -10.70439 -10.59713 -10.35433 -10.19467 -10.09642 -10.04722 -9.19623 -8.91536 -8.35440 -8.09242 -6.64962 -5.26364 2.46124 3.10510 3.15155 3.20698 3.60335 3.97553 4.10838 4.68905 4.74437 4.81906 4.87209 4.98190 5.09833 5.23009 5.30982 5.45059 5.53066 5.61648 5.74429 5.78730 5.85666 5.94145 6.02152 6.06422 6.08288 6.16376 6.21268 6.45997 6.60323 6.95961 7.09723 7.18640 7.37297 7.99774 8.16908 8.93872 10.29034 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.006001 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.383973 B = 4665.136025 C = 5170.872516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.051 0.949 4 C 0.133 3.867 5 N -1.128 6.128 6 S 2.718 3.282 7 O -1.009 7.009 8 O -1.011 7.011 9 C -1.021 5.021 10 H 0.100 0.900 11 C 0.133 3.867 12 N -0.846 5.846 13 Si 0.919 3.081 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.265 1.265 17 N -0.502 5.502 18 C 0.013 3.987 19 C 0.023 3.977 20 C -0.223 4.223 21 C -0.172 4.172 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.410 0.590 28 H 0.290 0.710 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 10.316 12.683 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 H 0.069 0.931 4 C 0.005 3.995 5 N -0.884 5.884 6 S 2.817 3.183 7 O -0.999 6.999 8 O -1.001 7.001 9 C -1.154 5.154 10 H 0.118 0.882 11 C -0.085 4.085 12 N -0.476 5.476 13 Si 0.743 3.257 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.190 1.190 17 N -0.224 5.224 18 C -0.135 4.135 19 C -0.087 4.087 20 C -0.262 4.262 21 C -0.210 4.210 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.243 0.757 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.360 9.430 11.906 15.192 hybrid contribution 1.948 0.698 0.219 2.081 sum 1.588 10.128 12.125 15.878 Atomic orbital electron populations 1.21867 0.93843 1.03302 1.01207 1.21895 0.96371 0.95431 0.89631 0.93149 1.21119 0.99074 0.82507 0.96825 1.55788 1.85029 1.18927 1.28705 1.00273 0.76318 0.71277 0.70439 1.93368 1.85438 1.38539 1.82570 1.93347 1.76718 1.73706 1.56294 1.30565 1.18790 1.44370 1.21686 0.88200 1.24734 1.00191 0.90394 0.93176 1.69898 1.34915 1.26685 1.16062 0.86231 0.82058 0.79037 0.78368 1.18950 1.20175 1.18963 1.61798 1.12934 1.47245 1.00434 1.22608 0.86957 1.00588 1.03321 1.22724 0.98530 0.99662 0.87769 1.23567 0.98449 0.97976 1.06203 1.23046 1.03384 0.97238 0.97329 0.93026 0.91784 0.91143 0.92466 0.90223 0.75745 0.89922 0.95287 0.91521 0.89571 0.86342 0.88290 0.89239 0.88791 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.04 37.16 0.34 -1.48 16 2 C 0.08 1.00 2.36 -67.71 -0.16 0.84 16 3 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.13 2.21 5.08 -4.04 -0.02 2.19 16 5 N -1.13 -22.33 5.19 -10.61 -0.06 -22.38 16 6 S 2.72 72.10 5.02 -107.50 -0.54 71.56 16 7 O -1.01 -29.98 18.02 -57.17 -1.03 -31.01 16 8 O -1.01 -29.51 17.49 -57.17 -1.00 -30.51 16 9 C -1.02 -27.98 9.71 30.60 0.30 -27.68 16 10 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 11 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 12 N -0.85 -25.09 13.19 55.43 0.73 -24.36 16 13 Si 0.92 20.63 29.54 -169.99 -5.02 15.61 16 14 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 N -0.50 -6.44 4.07 -226.90 -0.92 -7.37 16 18 C 0.01 0.16 7.46 60.06 0.45 0.61 16 19 C 0.02 0.24 5.81 -67.71 -0.39 -0.15 16 20 C -0.22 -2.11 9.52 -26.69 -0.25 -2.36 16 21 C -0.17 -1.69 9.97 -26.69 -0.27 -1.95 16 22 H 0.05 0.54 6.30 -51.93 -0.33 0.21 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.99 7.60 -51.93 -0.39 0.60 16 25 H 0.06 0.91 6.78 -51.93 -0.35 0.56 16 26 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 27 H 0.41 7.54 7.85 -34.47 -0.27 7.27 16 28 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.03 0.33 7.56 -51.93 -0.39 -0.06 16 30 H 0.07 0.76 6.26 -51.92 -0.33 0.44 16 31 H 0.09 1.24 6.46 -51.93 -0.34 0.90 16 32 H 0.12 1.18 6.21 -51.93 -0.32 0.86 16 33 H 0.10 0.96 5.92 -51.93 -0.31 0.65 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.02 7.57 -51.93 -0.39 0.63 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -34.30 303.22 -8.44 -42.74 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.06 Total: 7.51 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -0.11 Total: -26.36 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.25 Total: -54.11 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -2.03 Total: -61.52 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 72.10 SS G_CDS: -0.54 Total: 71.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.30 -8.44 -42.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229784828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.768 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds