Wall clock time and date at job start Mon Mar 30 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46766 * 2 1 4 4 C 1.52998 * 109.47409 * 239.99784 * 2 1 3 5 5 N 1.46497 * 109.47250 * 294.54090 * 4 2 1 6 6 S 1.65603 * 120.00144 * 164.29358 * 5 4 2 7 7 O 1.42090 * 106.40204 * 178.26142 * 6 5 4 8 8 O 1.42101 * 106.39873 * 311.18251 * 6 5 4 9 9 C 1.76202 * 107.21628 * 64.71763 * 6 5 4 10 10 H 1.07999 * 120.00288 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99818 * 180.02562 * 9 6 5 12 12 N 1.31518 * 119.99918 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00013 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.47290 * 60.00048 * 13 11 9 15 15 H 1.48506 * 109.47192 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46910 * 299.99666 * 13 11 9 17 17 N 1.46903 * 109.47161 * 119.99529 * 2 1 3 18 18 C 1.46898 * 110.99796 * 172.14574 * 17 2 1 19 19 C 1.46898 * 111.00119 * 296.10728 * 17 2 1 20 20 C 1.53004 * 117.49722 * 243.74134 * 19 17 2 21 21 C 1.53004 * 117.49366 * 175.08584 * 19 17 2 22 22 H 1.08998 * 109.47127 * 300.00033 * 1 2 3 23 23 H 1.08993 * 109.47181 * 60.00474 * 1 2 3 24 24 H 1.09001 * 109.46766 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46955 * 174.53398 * 4 2 1 26 26 H 1.09004 * 109.46854 * 54.54110 * 4 2 1 27 27 H 0.96998 * 120.00070 * 344.01158 * 5 4 2 28 28 H 0.97006 * 119.99675 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.46604 * 54.79610 * 18 17 2 30 30 H 1.09008 * 109.47059 * 174.78995 * 18 17 2 31 31 H 1.08998 * 109.47874 * 294.79189 * 18 17 2 32 32 H 1.09002 * 115.54989 * 29.41508 * 19 17 2 33 33 H 1.08999 * 117.49458 * 0.02562 * 20 19 17 34 34 H 1.08996 * 117.49602 * 145.01767 * 20 19 17 35 35 H 1.09006 * 117.49016 * 214.97547 * 21 19 17 36 36 H 1.08998 * 117.50420 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6620 -2.1352 -1.1853 6 16 1.7295 -3.0728 -2.5486 7 8 1.3470 -4.3831 -2.1539 8 8 1.0639 -2.3434 -3.5705 9 6 3.4216 -3.1722 -3.0300 10 1 4.1787 -2.6650 -2.4503 11 6 3.7792 -3.8975 -4.1467 12 7 2.8573 -4.5148 -4.8528 13 14 5.5731 -4.0035 -4.6566 14 1 6.3638 -4.6192 -3.5606 15 1 5.6916 -4.8368 -5.8801 16 1 6.0902 -2.6394 -4.9342 17 7 2.0197 -0.6924 1.1995 18 6 3.4760 -0.8764 1.1434 19 6 1.6262 0.0254 2.4193 20 6 2.7436 0.6008 3.2919 21 6 1.9605 -0.6275 3.7620 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1257 -0.6372 -1.2994 26 1 1.5991 -0.2670 -2.1365 27 1 1.3761 -2.5232 -0.3435 28 1 3.1088 -5.0248 -5.6387 29 1 3.9582 0.0883 0.9854 30 1 3.8242 -1.3073 2.0822 31 1 3.7263 -1.5467 0.3212 32 1 0.6974 0.5920 2.3524 33 1 3.7705 0.4471 2.9605 34 1 2.5498 1.5458 3.7993 35 1 1.2516 -0.4900 4.5787 36 1 2.4719 -1.5898 3.7403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229784828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:48 Heat of formation + Delta-G solvation = -85.062508 kcal Electronic energy + Delta-G solvation = -18744.079877 eV Core-core repulsion = 15775.640086 eV Total energy + Delta-G solvation = -2968.439791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24919 -37.42121 -37.02481 -36.08483 -35.15924 -33.71951 -31.43661 -28.23094 -27.41210 -26.20706 -23.18124 -22.34207 -20.98922 -20.34664 -19.33456 -18.21099 -17.69225 -17.16269 -16.70205 -16.13386 -15.86784 -15.54052 -15.20119 -15.04290 -14.40860 -13.97176 -13.56966 -13.41268 -13.22601 -12.99402 -12.96157 -12.63358 -12.46329 -12.42121 -12.36416 -12.32463 -12.30306 -12.02344 -11.92847 -11.35559 -11.21383 -11.12870 -10.96247 -10.05909 -9.00809 -8.72293 -7.44914 0.43799 1.35296 1.37318 1.50058 2.22622 2.60900 2.71207 3.05926 3.23317 3.74911 3.81146 3.99278 4.07503 4.17211 4.21695 4.37155 4.41013 4.57859 4.65534 4.68475 4.81798 4.89067 4.89391 4.97233 5.02860 5.06522 5.21687 5.24371 5.31175 5.36912 5.43789 5.92690 6.14099 6.22471 6.55461 6.81154 8.23737 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.006001 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.383973 B = 4665.136025 C = 5170.872516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.074 0.926 4 C 0.123 3.877 5 N -1.109 6.109 6 S 2.722 3.278 7 O -1.050 7.050 8 O -1.046 7.046 9 C -1.038 5.038 10 H 0.121 0.879 11 C 0.068 3.932 12 N -0.896 5.896 13 Si 0.990 3.010 14 H -0.252 1.252 15 H -0.266 1.266 16 H -0.249 1.249 17 N -0.517 5.517 18 C 0.013 3.987 19 C 0.009 3.991 20 C -0.211 4.211 21 C -0.173 4.173 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.417 0.583 28 H 0.298 0.702 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 11.888 14.020 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.004 4.004 5 N -0.870 5.870 6 S 2.823 3.177 7 O -1.040 7.040 8 O -1.036 7.036 9 C -1.172 5.172 10 H 0.139 0.861 11 C -0.144 4.144 12 N -0.527 5.527 13 Si 0.808 3.192 14 H -0.176 1.176 15 H -0.190 1.190 16 H -0.172 1.172 17 N -0.240 5.240 18 C -0.134 4.134 19 C -0.099 4.099 20 C -0.250 4.250 21 C -0.211 4.211 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.253 0.747 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.166 11.010 13.267 17.279 hybrid contribution 1.418 0.260 -0.108 1.446 sum 2.584 11.270 13.158 17.516 Atomic orbital electron populations 1.21881 0.93448 1.02379 1.02570 1.21796 0.96630 0.95848 0.88202 0.90840 1.21410 0.99786 0.80533 0.98679 1.55136 1.84915 1.19951 1.26978 0.99759 0.76256 0.70721 0.70977 1.93301 1.86077 1.41253 1.83380 1.93294 1.77555 1.74170 1.58543 1.30894 1.19461 1.44573 1.22254 0.86137 1.26025 1.05765 0.89579 0.93045 1.70001 1.37708 1.27932 1.17063 0.85164 0.75264 0.80090 0.78646 1.17576 1.18985 1.17229 1.61754 1.13045 1.48147 1.01024 1.22572 0.87153 1.00805 1.02892 1.22817 0.99583 1.00468 0.87071 1.23586 0.97830 0.98401 1.05149 1.23097 1.03709 0.97047 0.97208 0.90472 0.91692 0.93189 0.91599 0.91176 0.74742 0.89205 0.94026 0.90678 0.91803 0.85291 0.88520 0.87708 0.87352 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.04 71.98 0.65 -2.78 16 2 C 0.08 2.08 2.36 44.91 0.11 2.19 16 3 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.12 4.01 5.08 86.38 0.44 4.45 16 5 N -1.11 -44.24 5.19 -187.49 -0.97 -45.21 16 6 S 2.72 147.92 5.02 -56.49 -0.28 147.63 16 7 O -1.05 -64.41 18.02 -128.00 -2.31 -66.72 16 8 O -1.05 -62.92 17.49 -128.00 -2.24 -65.16 16 9 C -1.04 -57.04 9.71 67.73 0.66 -56.38 16 10 H 0.12 5.88 7.81 -2.91 -0.02 5.86 16 11 C 0.07 3.83 5.46 84.65 0.46 4.29 16 12 N -0.90 -54.07 13.19 21.45 0.28 -53.78 16 13 Si 0.99 41.32 29.54 68.60 2.03 43.35 16 14 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 15 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 16 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 17 N -0.52 -12.32 4.07 -871.77 -3.55 -15.86 16 18 C 0.01 0.31 7.46 127.69 0.95 1.27 16 19 C 0.01 0.18 5.81 44.92 0.26 0.44 16 20 C -0.21 -3.34 9.52 30.62 0.29 -3.05 16 21 C -0.17 -2.97 9.97 30.62 0.31 -2.67 16 22 H 0.08 1.41 6.30 -2.39 -0.02 1.40 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.38 7.60 -2.39 -0.02 1.36 16 25 H 0.07 2.04 6.78 -2.39 -0.02 2.02 16 26 H 0.07 2.43 7.74 -2.38 -0.02 2.41 16 27 H 0.42 15.49 7.85 -96.75 -0.76 14.73 16 28 H 0.30 16.20 8.31 -92.70 -0.77 15.42 16 29 H 0.04 0.85 7.56 -2.38 -0.02 0.83 16 30 H 0.07 1.60 6.26 -2.38 -0.01 1.58 16 31 H 0.06 1.77 6.46 -2.39 -0.02 1.75 16 32 H 0.13 2.14 6.21 -2.39 -0.01 2.13 16 33 H 0.10 1.60 5.92 -2.39 -0.01 1.58 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.68 7.57 -2.39 -0.02 1.66 16 Total: -1.00 -74.75 303.22 -2.59 -77.34 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.33 Total: 30.67 kcal Atomic # 6 Polarization: -56.37 SS G_CDS: 4.13 Total: -52.25 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.24 Total: -114.86 kcal Atomic # 8 Polarization: -127.34 SS G_CDS: -4.54 Total: -131.88 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 147.92 SS G_CDS: -0.28 Total: 147.63 kcal Total: -74.75 -2.59 -77.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229784828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.726 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds