Wall clock time and date at job start Mon Mar 30 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99810 * 2 1 4 4 C 1.50703 * 109.46737 * 293.94426 * 3 2 1 5 5 H 1.07994 * 120.00036 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99610 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00311 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99675 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47181 * 60.00384 * 8 6 4 10 10 H 1.48496 * 109.46973 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47052 * 300.00449 * 8 6 4 12 12 C 1.38306 * 110.99528 * 123.94524 * 2 1 3 13 13 N 1.32371 * 119.84752 * 298.18419 * 12 2 1 14 14 C 1.31890 * 121.80022 * 179.75215 * 13 12 2 15 15 C 1.38409 * 121.27429 * 0.52921 * 14 13 12 16 16 C 1.38284 * 119.53595 * 359.74763 * 15 14 13 17 17 C 1.40217 * 118.34622 * 359.97438 * 16 15 14 18 18 C 1.46783 * 120.63298 * 179.97438 * 17 16 15 19 19 C 1.35190 * 120.00297 * 15.33788 * 18 17 16 20 20 C 1.41687 * 120.00061 * 180.02562 * 19 18 17 21 21 O 1.21654 * 119.99744 * 0.02562 * 20 19 18 22 22 O 1.34943 * 120.00011 * 179.97438 * 20 19 18 23 23 H 1.09008 * 109.46650 * 67.04614 * 1 2 3 24 24 H 1.09000 * 109.47238 * 187.04222 * 1 2 3 25 25 H 1.08993 * 109.47670 * 307.04589 * 1 2 3 26 26 H 1.09005 * 109.46834 * 173.95080 * 3 2 1 27 27 H 1.08997 * 109.47318 * 53.95118 * 3 2 1 28 28 H 0.96993 * 119.99716 * 179.97438 * 7 6 4 29 29 H 1.07994 * 119.36201 * 180.25034 * 14 13 12 30 30 H 1.08000 * 120.23162 * 179.75982 * 15 14 13 31 31 H 1.07998 * 120.82975 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.99584 * 195.33866 * 18 17 16 33 33 H 1.08000 * 120.00119 * 0.02562 * 19 18 17 34 34 H 0.96698 * 113.99805 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0742 1.5113 -2.0486 6 6 2.0268 3.3494 -1.5286 7 7 2.7118 4.0020 -0.6151 8 14 1.5820 4.1870 -3.1380 9 1 0.1048 4.2234 -3.2853 10 1 2.1142 5.5733 -3.1381 11 1 2.1739 3.4299 -4.2702 12 6 1.9645 -0.7210 1.0712 13 7 1.6943 -0.3335 2.3077 14 6 2.1428 -0.9948 3.3570 15 6 2.9296 -2.1242 3.2120 16 6 3.2496 -2.5739 1.9441 17 6 2.7587 -1.8608 0.8412 18 6 3.0679 -2.2934 -0.5269 19 6 3.5566 -3.5341 -0.7495 20 6 3.8556 -3.9514 -2.0701 21 8 3.6730 -3.1930 -3.0036 22 8 4.3439 -5.1896 -2.2921 23 1 -0.3633 0.4008 -0.9464 24 1 -0.3634 -1.0199 0.1260 25 1 -0.3634 0.6191 0.8202 26 1 3.0797 1.3444 0.1083 27 1 1.5610 1.9274 0.8309 28 1 2.9864 4.9180 -0.7772 29 1 1.8949 -0.6457 4.3485 30 1 3.2910 -2.6506 4.0831 31 1 3.8617 -3.4530 1.8068 32 1 2.9051 -1.6204 -1.3558 33 1 3.7191 -4.2072 0.0793 34 1 4.5173 -5.3828 -3.2236 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234268072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:04 Heat of formation + Delta-G solvation = -49.769082 kcal Electronic energy + Delta-G solvation = -18998.512597 eV Core-core repulsion = 15896.159292 eV Total energy + Delta-G solvation = -3102.353304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59533 -41.10937 -37.94876 -37.14095 -35.74868 -34.76530 -32.43960 -31.09230 -29.29870 -27.11199 -26.37133 -24.80042 -23.44378 -22.21691 -20.38884 -19.31572 -18.72870 -18.16104 -17.85043 -16.94821 -16.80599 -16.58454 -16.25395 -15.79219 -15.24125 -14.93710 -14.57976 -14.33540 -14.31946 -14.03416 -13.31291 -13.20927 -12.92691 -12.78482 -12.59039 -12.53029 -12.46618 -12.08548 -11.82747 -11.69783 -11.52132 -10.67016 -10.56380 -10.47466 -9.46938 -9.40187 -8.24917 -6.36266 -0.74530 0.25419 0.74833 1.39224 1.43440 1.51086 2.08722 2.37062 2.39703 2.82446 2.94181 3.08728 3.55956 3.82558 3.91463 4.08839 4.16780 4.28401 4.46579 4.56404 4.62918 4.65707 4.90463 4.93906 5.08880 5.11774 5.15935 5.29725 5.41551 5.54970 5.58040 5.67733 5.98209 6.00238 6.62757 6.76956 6.98496 7.01734 7.33254 8.86631 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.006525 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.518695 B = 4289.974197 C = 5798.065369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.504 5.504 3 C 0.229 3.771 4 C -0.529 4.529 5 H 0.067 0.933 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.304 3.696 13 N -0.552 5.552 14 C 0.112 3.888 15 C -0.170 4.170 16 C -0.041 4.041 17 C -0.132 4.132 18 C 0.035 3.965 19 C -0.216 4.216 20 C 0.517 3.483 21 O -0.564 6.564 22 O -0.497 6.497 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.020 0.980 26 H -0.008 1.008 27 H -0.025 1.025 28 H 0.266 0.734 29 H 0.180 0.820 30 H 0.187 0.813 31 H 0.184 0.816 32 H 0.115 0.885 33 H 0.175 0.825 34 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -18.916 6.060 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.227 5.227 3 C 0.104 3.896 4 C -0.567 4.567 5 H 0.085 0.915 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.796 3.204 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.195 1.195 12 C 0.076 3.924 13 N -0.264 5.264 14 C -0.047 4.047 15 C -0.189 4.189 16 C -0.066 4.066 17 C -0.136 4.136 18 C 0.016 3.984 19 C -0.235 4.235 20 C 0.366 3.634 21 O -0.459 6.459 22 O -0.309 6.309 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.038 0.962 26 H 0.010 0.990 27 H -0.007 1.007 28 H 0.075 0.925 29 H 0.197 0.803 30 H 0.204 0.796 31 H 0.201 0.799 32 H 0.133 0.867 33 H 0.193 0.807 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 1.557 -17.962 5.950 18.986 hybrid contribution 0.154 0.757 -0.812 1.121 sum 1.711 -17.205 5.138 18.037 Atomic orbital electron populations 1.22088 0.85272 1.00523 1.01295 1.60096 1.09680 1.16802 1.36129 1.19244 0.92768 0.81784 0.95768 1.21401 1.35575 0.97702 1.02059 0.91475 1.25933 0.94759 0.97889 1.00844 1.70094 1.39005 1.11965 1.36271 0.85395 0.79045 0.77152 0.78801 1.18854 1.20581 1.19476 1.20548 0.92928 0.91300 0.87644 1.67898 1.24912 1.33103 1.00535 1.23419 0.92137 0.91691 0.97449 1.22492 0.99331 0.97831 0.99228 1.22293 0.95379 0.98303 0.90620 1.19737 1.02175 0.97056 0.94659 1.22290 0.86254 0.94650 0.95235 1.21295 1.08679 0.98042 0.95472 1.19831 0.73355 0.79729 0.90492 1.91001 1.52217 1.55393 1.47262 1.85012 1.76722 1.31774 1.37398 0.91017 0.91168 0.96176 0.99031 1.00749 0.92538 0.80262 0.79601 0.79919 0.86734 0.80736 0.71571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.31 9.08 127.69 1.16 3.47 16 2 N -0.50 -23.49 3.88 -730.06 -2.83 -26.32 16 3 C 0.23 13.02 4.48 85.56 0.38 13.40 16 4 C -0.53 -31.20 8.61 25.60 0.22 -30.98 16 5 H 0.07 3.84 7.10 -2.91 -0.02 3.82 16 6 C 0.00 0.25 5.46 84.66 0.46 0.71 16 7 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 8 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.30 12.17 5.23 133.72 0.70 12.87 16 13 N -0.55 -21.05 9.84 -192.24 -1.89 -22.94 16 14 C 0.11 2.92 11.16 84.72 0.95 3.87 16 15 C -0.17 -3.16 10.08 22.32 0.23 -2.93 16 16 C -0.04 -0.85 9.45 22.76 0.22 -0.63 16 17 C -0.13 -4.19 5.87 -19.93 -0.12 -4.31 16 18 C 0.04 1.13 9.08 23.80 0.22 1.35 16 19 C -0.22 -5.24 9.30 22.42 0.21 -5.03 16 20 C 0.52 13.71 8.05 68.67 0.55 14.27 16 21 O -0.56 -20.33 16.84 19.33 0.33 -20.00 16 22 O -0.50 -8.96 13.54 -58.59 -0.79 -9.76 16 23 H 0.07 3.05 7.07 -2.38 -0.02 3.03 16 24 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 25 H 0.02 0.87 8.03 -2.39 -0.02 0.85 16 26 H -0.01 -0.53 8.05 -2.38 -0.02 -0.55 16 27 H -0.03 -1.58 8.02 -2.39 -0.02 -1.60 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.18 2.14 6.56 -2.91 -0.02 2.12 16 32 H 0.11 4.66 7.08 -2.91 -0.02 4.64 16 33 H 0.18 2.69 6.40 -2.91 -0.02 2.67 16 34 H 0.42 4.27 8.98 -74.06 -0.67 3.61 16 Total: -1.00 -79.80 303.88 2.76 -77.04 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.47 Total: 5.97 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.17 Total: 6.05 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.44 Total: -107.03 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.47 Total: -29.76 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -79.80 2.76 -77.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234268072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.274 kcal (2) G-P(sol) polarization free energy of solvation -79.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds