Wall clock time and date at job start Mon Mar 30 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99848 * 2 1 4 4 C 1.53005 * 109.46752 * 273.46968 * 3 2 1 5 5 H 1.08996 * 109.46291 * 296.87074 * 4 3 2 6 6 C 1.53041 * 109.45145 * 176.90155 * 4 3 2 7 7 C 1.53113 * 109.27771 * 180.81196 * 6 4 3 8 8 C 1.53117 * 109.16178 * 57.65657 * 7 6 4 9 9 C 1.53043 * 109.27701 * 302.34290 * 8 7 6 10 10 N 1.46843 * 109.52149 * 59.17959 * 9 8 7 11 11 S 1.65608 * 120.00012 * 180.02562 * 2 1 3 12 12 O 1.42099 * 106.39841 * 23.53736 * 11 2 1 13 13 O 1.42097 * 106.40076 * 156.46182 * 11 2 1 14 14 C 1.76206 * 107.21533 * 270.00051 * 11 2 1 15 15 H 1.07993 * 120.00008 * 359.97438 * 14 11 2 16 16 C 1.37878 * 119.99925 * 180.02562 * 14 11 2 17 17 N 1.31518 * 119.99867 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00013 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46870 * 59.99747 * 18 16 14 20 20 H 1.48500 * 109.46858 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46915 * 299.99693 * 18 16 14 22 22 H 1.09003 * 109.47345 * 95.28056 * 1 2 3 23 23 H 1.09003 * 109.46871 * 215.28144 * 1 2 3 24 24 H 1.09000 * 109.47156 * 335.28059 * 1 2 3 25 25 H 1.09004 * 109.47046 * 153.47747 * 3 2 1 26 26 H 1.08991 * 109.47550 * 33.47309 * 3 2 1 27 27 H 1.09005 * 109.50249 * 60.86932 * 6 4 3 28 28 H 1.09001 * 109.50164 * 300.75711 * 6 4 3 29 29 H 1.08997 * 109.52341 * 297.74891 * 7 6 4 30 30 H 1.09006 * 109.52386 * 177.56275 * 7 6 4 31 31 H 1.08994 * 109.50368 * 62.28679 * 8 7 6 32 32 H 1.09003 * 109.50425 * 182.36621 * 8 7 6 33 33 H 1.08993 * 109.46059 * 179.19302 * 9 8 7 34 34 H 1.08999 * 109.46330 * 299.16573 * 9 8 7 35 35 H 1.00894 * 111.00154 * 174.16364 * 10 9 8 36 36 H 0.96996 * 120.00189 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3768 1.7540 -1.4399 5 1 2.9847 1.0371 -1.9917 6 6 3.0735 3.1166 -1.4355 7 6 3.2327 3.6076 -2.8770 8 6 1.8536 3.6810 -3.5381 9 6 1.1922 2.3020 -3.4817 10 7 1.0619 1.8772 -2.0821 11 16 2.2930 -1.4342 -0.0006 12 8 1.4113 -2.4063 -0.5455 13 8 3.5759 -1.1566 -0.5449 14 6 2.5538 -1.8866 1.6823 15 1 2.1874 -1.2515 2.4751 16 6 3.2265 -3.0509 1.9868 17 7 3.6732 -3.8241 1.0212 18 14 3.5036 -3.5302 3.7709 19 1 2.1926 -3.6848 4.4512 20 1 4.2454 -4.8153 3.8287 21 1 4.2925 -2.4717 4.4510 22 1 -0.3634 -0.0946 -1.0233 23 1 -0.3633 -0.8389 0.5936 24 1 -0.3633 0.9335 0.4297 25 1 3.1755 1.1236 0.4589 26 1 1.6368 2.0120 0.5667 27 1 4.0559 3.0215 -0.9728 28 1 2.4729 3.8306 -0.8720 29 1 3.8655 2.9138 -3.4303 30 1 3.6895 4.5974 -2.8763 31 1 1.2338 4.4039 -3.0078 32 1 1.9643 3.9898 -4.5776 33 1 0.2042 2.3542 -3.9388 34 1 1.8057 1.5825 -4.0239 35 1 0.5435 1.0144 -2.0128 36 1 4.1462 -4.6434 1.2354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234306605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:56 Heat of formation + Delta-G solvation = -99.007213 kcal Electronic energy + Delta-G solvation = -19049.312128 eV Core-core repulsion = 16080.267649 eV Total energy + Delta-G solvation = -2969.044479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.74525 -35.35320 -35.26782 -33.94614 -33.06000 -31.73307 -31.14747 -27.09492 -26.12160 -24.10021 -23.20385 -21.35145 -19.49184 -18.72043 -17.25071 -16.31831 -16.23928 -15.23183 -15.05176 -14.47812 -14.34993 -14.01264 -13.58098 -13.39299 -13.26826 -12.73717 -12.49264 -12.03451 -11.98546 -11.84274 -11.37178 -11.22064 -11.20067 -10.90899 -10.68355 -10.62660 -10.57433 -10.28786 -10.25767 -10.12956 -10.02901 -9.23813 -8.92077 -8.22904 -8.12930 -6.69417 -5.31939 2.27458 3.08556 3.12829 3.18576 4.05621 4.39344 4.54053 4.64233 4.94396 4.98126 5.06833 5.36066 5.52342 5.58421 5.65374 5.72011 5.78745 5.85222 5.89061 5.96886 6.00548 6.05368 6.10878 6.19303 6.25161 6.27473 6.35228 6.44236 6.61911 6.79262 7.30136 7.33536 7.58419 7.65353 7.97353 8.89041 10.24062 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037902 B = 0.005965 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.572083 B = 4692.787944 C = 4836.570428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -1.018 6.018 3 C 0.138 3.862 4 C 0.063 3.937 5 H 0.050 0.950 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.115 4.115 9 C 0.054 3.946 10 N -0.686 5.686 11 S 2.713 3.287 12 O -1.005 7.005 13 O -1.003 7.003 14 C -1.022 5.022 15 H 0.102 0.898 16 C 0.132 3.868 17 N -0.847 5.847 18 Si 0.921 3.079 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.347 0.653 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 12.421 -3.475 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.853 5.853 3 C 0.011 3.989 4 C -0.048 4.048 5 H 0.068 0.932 6 C -0.148 4.148 7 C -0.159 4.159 8 C -0.152 4.152 9 C -0.075 4.075 10 N -0.321 5.321 11 S 2.814 3.186 12 O -0.995 6.995 13 O -0.993 6.993 14 C -1.155 5.155 15 H 0.120 0.880 16 C -0.085 4.085 17 N -0.476 5.476 18 Si 0.744 3.256 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.188 1.188 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.168 0.832 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.439 12.433 -4.107 13.538 hybrid contribution 0.406 -1.037 1.099 1.565 sum -3.033 11.396 -3.008 12.170 Atomic orbital electron populations 1.21280 0.80025 1.02285 1.00471 1.57958 1.14288 1.22033 1.91057 1.21192 0.97124 0.85786 0.94812 1.22058 0.89872 0.96459 0.96424 0.93214 1.21554 1.00268 0.96267 0.96710 1.21568 0.96981 1.00847 0.96500 1.21565 0.96526 0.97215 0.99944 1.21906 0.99859 0.96136 0.89649 1.60480 1.18102 1.38563 1.14985 1.00588 0.71784 0.69689 0.76568 1.93355 1.67277 1.57927 1.80961 1.93355 1.40961 1.84066 1.80926 1.30602 1.50167 1.16913 1.17798 0.88022 1.24761 0.90127 0.93387 1.00272 1.69890 1.31032 1.12822 1.33896 0.86200 0.79275 0.78243 0.81835 1.18852 1.20118 1.18844 0.93920 0.91501 0.91629 0.89651 0.90756 0.91319 0.91235 0.92251 0.92077 0.91363 0.92172 0.91195 0.95445 0.83160 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.77 9.10 59.85 0.54 2.31 16 2 N -1.02 -20.38 2.92 -121.76 -0.36 -20.74 16 3 C 0.14 2.38 5.09 -4.04 -0.02 2.36 16 4 C 0.06 1.03 2.77 -67.72 -0.19 0.84 16 5 H 0.05 0.96 8.03 -51.93 -0.42 0.54 16 6 C -0.11 -1.45 5.37 -26.65 -0.14 -1.59 16 7 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 8 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 9 C 0.05 0.70 6.55 -3.83 -0.03 0.67 16 10 N -0.69 -10.18 6.35 -106.76 -0.68 -10.86 16 11 S 2.71 71.88 4.90 -107.50 -0.53 71.35 16 12 O -1.00 -29.31 17.20 -57.17 -0.98 -30.30 16 13 O -1.00 -28.87 16.91 -57.17 -0.97 -29.84 16 14 C -1.02 -28.20 9.75 30.60 0.30 -27.91 16 15 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 16 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 17 N -0.85 -25.03 13.19 55.43 0.73 -24.30 16 18 Si 0.92 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 22 H 0.04 0.66 6.51 -51.93 -0.34 0.32 16 23 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 24 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 25 H 0.09 1.55 7.66 -51.93 -0.40 1.15 16 26 H 0.07 1.09 7.91 -51.93 -0.41 0.68 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.35 5.41 5.42 -39.29 -0.21 5.20 16 36 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -33.73 301.15 -8.74 -42.47 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.53 Total: 4.79 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 0.05 Total: -22.72 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.30 Total: -55.89 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -1.95 Total: -60.13 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 71.88 SS G_CDS: -0.53 Total: 71.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.73 -8.74 -42.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234306605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.538 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds