Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99848 * 2 1 4 4 C 1.53005 * 109.46752 * 273.46968 * 3 2 1 5 5 H 1.08996 * 109.46291 * 296.87074 * 4 3 2 6 6 C 1.53041 * 109.45145 * 176.90155 * 4 3 2 7 7 C 1.53113 * 109.27771 * 180.81196 * 6 4 3 8 8 C 1.53117 * 109.16178 * 57.65657 * 7 6 4 9 9 C 1.53043 * 109.27701 * 302.34290 * 8 7 6 10 10 N 1.46843 * 109.52149 * 59.17959 * 9 8 7 11 11 S 1.65608 * 120.00012 * 180.02562 * 2 1 3 12 12 O 1.42099 * 106.39841 * 23.53736 * 11 2 1 13 13 O 1.42097 * 106.40076 * 156.46182 * 11 2 1 14 14 C 1.76206 * 107.21533 * 270.00051 * 11 2 1 15 15 H 1.07993 * 120.00008 * 359.97438 * 14 11 2 16 16 C 1.37878 * 119.99925 * 180.02562 * 14 11 2 17 17 N 1.31518 * 119.99867 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00013 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46870 * 59.99747 * 18 16 14 20 20 H 1.48500 * 109.46858 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46915 * 299.99693 * 18 16 14 22 22 H 1.09003 * 109.47345 * 95.28056 * 1 2 3 23 23 H 1.09003 * 109.46871 * 215.28144 * 1 2 3 24 24 H 1.09000 * 109.47156 * 335.28059 * 1 2 3 25 25 H 1.09004 * 109.47046 * 153.47747 * 3 2 1 26 26 H 1.08991 * 109.47550 * 33.47309 * 3 2 1 27 27 H 1.09005 * 109.50249 * 60.86932 * 6 4 3 28 28 H 1.09001 * 109.50164 * 300.75711 * 6 4 3 29 29 H 1.08997 * 109.52341 * 297.74891 * 7 6 4 30 30 H 1.09006 * 109.52386 * 177.56275 * 7 6 4 31 31 H 1.08994 * 109.50368 * 62.28679 * 8 7 6 32 32 H 1.09003 * 109.50425 * 182.36621 * 8 7 6 33 33 H 1.08993 * 109.46059 * 179.19302 * 9 8 7 34 34 H 1.08999 * 109.46330 * 299.16573 * 9 8 7 35 35 H 1.00894 * 111.00154 * 174.16364 * 10 9 8 36 36 H 0.96996 * 120.00189 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3768 1.7540 -1.4399 5 1 2.9847 1.0371 -1.9917 6 6 3.0735 3.1166 -1.4355 7 6 3.2327 3.6076 -2.8770 8 6 1.8536 3.6810 -3.5381 9 6 1.1922 2.3020 -3.4817 10 7 1.0619 1.8772 -2.0821 11 16 2.2930 -1.4342 -0.0006 12 8 1.4113 -2.4063 -0.5455 13 8 3.5759 -1.1566 -0.5449 14 6 2.5538 -1.8866 1.6823 15 1 2.1874 -1.2515 2.4751 16 6 3.2265 -3.0509 1.9868 17 7 3.6732 -3.8241 1.0212 18 14 3.5036 -3.5302 3.7709 19 1 2.1926 -3.6848 4.4512 20 1 4.2454 -4.8153 3.8287 21 1 4.2925 -2.4717 4.4510 22 1 -0.3634 -0.0946 -1.0233 23 1 -0.3633 -0.8389 0.5936 24 1 -0.3633 0.9335 0.4297 25 1 3.1755 1.1236 0.4589 26 1 1.6368 2.0120 0.5667 27 1 4.0559 3.0215 -0.9728 28 1 2.4729 3.8306 -0.8720 29 1 3.8655 2.9138 -3.4303 30 1 3.6895 4.5974 -2.8763 31 1 1.2338 4.4039 -3.0078 32 1 1.9643 3.9898 -4.5776 33 1 0.2042 2.3542 -3.9388 34 1 1.8057 1.5825 -4.0239 35 1 0.5435 1.0144 -2.0128 36 1 4.1462 -4.6434 1.2354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234306605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = -125.950275 kcal Electronic energy + Delta-G solvation = -19050.480467 eV Core-core repulsion = 16080.267649 eV Total energy + Delta-G solvation = -2970.212818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.91791 -37.45470 -36.75699 -36.13683 -35.16764 -32.80591 -32.35596 -28.39019 -28.25686 -25.48909 -24.28226 -22.59376 -20.78264 -20.55833 -19.05421 -18.25143 -17.55155 -17.04798 -16.82221 -15.93353 -15.79821 -15.27709 -15.24890 -14.67504 -14.57660 -14.01463 -13.89776 -13.66254 -13.56874 -13.25299 -13.04429 -13.00317 -12.79657 -12.50421 -12.33274 -12.26588 -12.18606 -11.87697 -11.63555 -11.50219 -11.24885 -11.20617 -10.97764 -9.76925 -9.41479 -8.75623 -7.50408 0.29941 1.32936 1.35292 1.48474 2.19703 2.56349 2.82627 3.22300 3.74445 3.90477 3.91601 4.05848 4.11639 4.26845 4.36163 4.41595 4.49746 4.63812 4.66004 4.74728 4.83220 4.89424 4.96944 5.02282 5.07782 5.13682 5.15039 5.24467 5.28480 5.34984 5.50924 5.88644 5.97705 6.12091 6.40768 6.76435 8.19126 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037902 B = 0.005965 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.572083 B = 4692.787944 C = 4836.570428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.011 6.011 3 C 0.132 3.868 4 C 0.064 3.936 5 H 0.007 0.993 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.109 4.109 9 C 0.046 3.954 10 N -0.679 5.679 11 S 2.716 3.284 12 O -1.043 7.043 13 O -1.039 7.039 14 C -1.043 5.043 15 H 0.119 0.881 16 C 0.068 3.932 17 N -0.896 5.896 18 Si 0.991 3.009 19 H -0.249 1.249 20 H -0.264 1.264 21 H -0.249 1.249 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.009 0.991 35 H 0.339 0.661 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 14.526 -2.152 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.849 5.849 3 C 0.006 3.994 4 C -0.048 4.048 5 H 0.025 0.975 6 C -0.145 4.145 7 C -0.160 4.160 8 C -0.146 4.146 9 C -0.083 4.083 10 N -0.313 5.313 11 S 2.818 3.182 12 O -1.033 7.033 13 O -1.029 7.029 14 C -1.176 5.176 15 H 0.137 0.863 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.809 3.191 19 H -0.173 1.173 20 H -0.188 1.188 21 H -0.173 1.173 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.123 0.877 25 H 0.089 0.911 26 H 0.129 0.871 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.027 0.973 35 H 0.160 0.840 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.328 14.556 -2.809 15.443 hybrid contribution 0.628 -1.622 0.613 1.844 sum -3.701 12.934 -2.196 13.631 Atomic orbital electron populations 1.21566 0.77693 1.03984 1.01486 1.57423 1.15617 1.20958 1.90948 1.21464 0.96777 0.85048 0.96125 1.22007 0.90304 0.97273 0.95201 0.97540 1.21566 1.00142 0.94635 0.98184 1.21601 0.97501 1.01642 0.95267 1.21556 0.95835 0.95975 1.01281 1.22096 1.00925 0.96889 0.88393 1.60575 1.16807 1.37793 1.16141 1.00124 0.71189 0.70539 0.76390 1.93291 1.67884 1.60501 1.81628 1.93296 1.43122 1.84928 1.81542 1.30984 1.50281 1.17614 1.18726 0.86262 1.26066 0.89401 0.93204 1.05785 1.69991 1.32277 1.13777 1.36713 0.85152 0.80113 0.78712 0.75143 1.17305 1.18802 1.17282 0.92895 0.92483 0.87654 0.91148 0.87071 0.91402 0.89372 0.93783 0.89656 0.90332 0.90245 0.89287 0.97258 0.84039 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.14 9.10 127.77 1.16 4.30 16 2 N -1.01 -40.32 2.92 -539.13 -1.58 -41.90 16 3 C 0.13 4.45 5.09 86.38 0.44 4.89 16 4 C 0.06 2.06 2.77 44.94 0.12 2.19 16 5 H 0.01 0.26 8.03 -2.39 -0.02 0.25 16 6 C -0.11 -2.65 5.37 30.65 0.16 -2.49 16 7 C -0.12 -2.65 6.00 30.67 0.18 -2.47 16 8 C -0.11 -2.14 6.09 30.65 0.19 -1.96 16 9 C 0.05 1.13 6.55 86.33 0.57 1.70 16 10 N -0.68 -19.28 6.35 -491.68 -3.12 -22.40 16 11 S 2.72 148.20 4.90 -56.49 -0.28 147.93 16 12 O -1.04 -63.09 17.20 -128.00 -2.20 -65.29 16 13 O -1.04 -62.56 16.91 -128.00 -2.16 -64.73 16 14 C -1.04 -58.05 9.75 67.73 0.66 -57.39 16 15 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 16 C 0.07 3.83 5.46 84.65 0.46 4.29 16 17 N -0.90 -54.28 13.19 21.45 0.28 -54.00 16 18 Si 0.99 41.47 29.54 68.60 2.03 43.50 16 19 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 22 H 0.05 1.59 6.51 -2.39 -0.02 1.58 16 23 H 0.06 1.94 7.98 -2.39 -0.02 1.92 16 24 H 0.10 2.54 7.87 -2.39 -0.02 2.52 16 25 H 0.07 2.58 7.66 -2.39 -0.02 2.56 16 26 H 0.11 2.94 7.91 -2.39 -0.02 2.93 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.34 10.32 5.42 -89.70 -0.49 9.83 16 36 H 0.30 16.27 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -75.36 301.15 -2.51 -77.87 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.58 Total: 25.96 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 3.95 Total: -46.94 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -4.42 Total: -118.29 kcal Atomic # 8 Polarization: -125.65 SS G_CDS: -4.37 Total: -130.02 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 148.20 SS G_CDS: -0.28 Total: 147.93 kcal Total: -75.36 -2.51 -77.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234306605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.083 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds