Wall clock time and date at job start Mon Mar 30 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52991 * 109.47137 * 85.00126 * 3 2 1 5 5 H 1.08995 * 109.50766 * 304.92403 * 4 3 2 6 6 C 1.53119 * 109.50410 * 184.80225 * 4 3 2 7 7 C 1.53122 * 109.16269 * 182.40422 * 6 4 3 8 8 C 1.53034 * 109.27694 * 57.65582 * 7 6 4 9 9 N 1.46851 * 109.52555 * 300.82197 * 8 7 6 10 10 C 1.46852 * 111.19686 * 61.74091 * 9 8 7 11 11 S 1.65606 * 120.00003 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40010 * 203.53824 * 11 2 1 13 13 O 1.42094 * 106.39890 * 336.45188 * 11 2 1 14 14 C 1.76194 * 107.22007 * 89.99703 * 11 2 1 15 15 H 1.08001 * 120.00253 * 359.97438 * 14 11 2 16 16 C 1.37882 * 119.99779 * 180.02562 * 14 11 2 17 17 N 1.31510 * 120.00017 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99681 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47349 * 90.00025 * 18 16 14 20 20 H 1.48495 * 109.46998 * 209.99510 * 18 16 14 21 21 H 1.48499 * 109.47345 * 329.99975 * 18 16 14 22 22 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 24 24 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 25 25 H 1.08999 * 109.47026 * 205.00489 * 3 2 1 26 26 H 1.09005 * 109.46953 * 325.00115 * 3 2 1 27 27 H 1.08997 * 109.52220 * 302.31115 * 6 4 3 28 28 H 1.09001 * 109.52179 * 62.50404 * 6 4 3 29 29 H 1.09000 * 109.50571 * 297.71349 * 7 6 4 30 30 H 1.09000 * 109.53344 * 177.61467 * 7 6 4 31 31 H 1.09001 * 109.46437 * 180.80491 * 8 7 6 32 32 H 1.09006 * 109.46351 * 60.83771 * 8 7 6 33 33 H 1.00898 * 111.00178 * 185.83850 * 9 8 7 34 34 H 1.08994 * 109.45826 * 178.24600 * 10 9 8 35 35 H 1.08994 * 109.45047 * 58.27158 * 10 9 8 36 36 H 0.97000 * 120.00096 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 1.4369 5 1 1.3596 1.8411 1.9007 6 6 3.0024 3.1554 1.4290 7 6 3.1996 3.6266 2.8725 8 6 4.0488 2.6012 3.6271 9 7 3.3756 1.2962 3.6068 10 6 3.2177 0.8016 2.2331 11 16 2.2930 -1.4342 -0.0006 12 8 3.5759 -1.1570 0.5439 13 8 1.4114 -2.4067 0.5435 14 6 2.5537 -1.8852 -1.6838 15 1 2.1866 -1.2499 -2.4762 16 6 3.2256 -3.0499 -1.9893 17 7 3.6722 -3.8238 -1.0243 18 14 3.5014 -3.5284 -3.7738 19 1 4.7872 -2.9555 -4.2469 20 1 3.5471 -5.0082 -3.8880 21 1 2.3893 -3.0017 -4.6051 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8900 0.5139 25 1 3.1857 1.1177 -0.4344 26 1 1.6501 2.0043 -0.5895 27 1 3.9697 3.0950 0.9302 28 1 2.3620 3.8611 0.8998 29 1 2.2292 3.7243 3.3592 30 1 3.7067 4.5915 2.8749 31 1 4.1791 2.9266 4.6592 32 1 5.0241 2.5143 3.1480 33 1 3.8684 0.6262 4.1780 34 1 2.7444 -0.1800 2.2529 35 1 4.1969 0.7232 1.7608 36 1 4.1452 -4.6429 -1.2392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234333021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:12 Heat of formation + Delta-G solvation = -98.303523 kcal Electronic energy + Delta-G solvation = -19218.565232 eV Core-core repulsion = 16249.551268 eV Total energy + Delta-G solvation = -2969.013964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.63870 -35.45187 -35.26557 -33.95571 -33.06456 -31.96696 -30.71955 -26.58811 -26.10077 -24.12690 -23.38984 -21.26633 -19.31555 -18.70164 -17.22787 -16.26968 -16.20135 -15.13740 -14.98394 -14.34805 -14.33169 -14.06163 -13.50182 -13.37219 -13.18772 -12.69473 -12.44210 -12.22310 -12.00527 -11.69586 -11.40817 -11.22545 -11.18667 -10.85691 -10.62303 -10.56555 -10.38153 -10.25506 -10.13100 -10.02215 -9.79437 -9.24232 -8.87884 -8.12475 -8.10787 -6.69160 -5.31136 2.30115 3.06087 3.12959 3.19672 4.06014 4.49287 4.56213 4.64609 5.00856 5.08032 5.18036 5.34792 5.59444 5.67552 5.75236 5.82093 5.84144 5.86972 5.96903 6.03699 6.07814 6.15991 6.18775 6.28904 6.32235 6.36272 6.52602 6.64344 6.75824 6.88553 7.32781 7.36153 7.63608 7.68668 7.98079 8.89645 10.24007 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.006486 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.729551 B = 4315.674038 C = 4428.126350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.016 6.016 3 C 0.135 3.865 4 C -0.104 4.104 5 H 0.076 0.924 6 C -0.115 4.115 7 C -0.114 4.114 8 C 0.056 3.944 9 N -0.696 5.696 10 C 0.067 3.933 11 S 2.715 3.285 12 O -0.998 6.998 13 O -1.006 7.006 14 C -1.023 5.023 15 H 0.100 0.900 16 C 0.133 3.867 17 N -0.846 5.846 18 Si 0.918 3.082 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.263 1.263 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.341 0.659 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 12.044 3.116 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.851 5.851 3 C 0.008 3.992 4 C -0.125 4.125 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.074 4.074 9 N -0.327 5.327 10 C -0.062 4.062 11 S 2.815 3.185 12 O -0.989 6.989 13 O -0.996 6.996 14 C -1.156 5.156 15 H 0.119 0.881 16 C -0.085 4.085 17 N -0.476 5.476 18 Si 0.742 3.258 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.187 1.187 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.159 0.841 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.792 11.698 3.992 12.489 hybrid contribution 0.981 -0.468 -1.810 2.111 sum -0.811 11.230 2.183 11.469 Atomic orbital electron populations 1.21320 0.80307 1.02667 1.00909 1.57852 1.14180 1.21952 1.91140 1.21113 0.96927 0.85952 0.95203 1.21649 0.99858 0.94417 0.96569 0.90593 1.21577 1.00836 0.96329 0.96560 1.21549 1.00566 0.97313 0.95809 1.21899 0.95136 0.90736 0.99622 1.60349 1.54750 1.04596 1.13044 1.22131 0.99804 0.97276 0.86969 1.00522 0.71959 0.69646 0.76355 1.93367 1.41081 1.83928 1.80482 1.93346 1.67327 1.57938 1.81003 1.30659 1.50052 1.16870 1.18022 0.88140 1.24744 0.90155 0.93380 1.00193 1.69892 1.31073 1.12816 1.33790 0.86197 0.79538 0.78103 0.81938 1.19198 1.19932 1.18667 0.93718 0.92342 0.90470 0.90061 0.91434 0.91960 0.91947 0.91450 0.92039 0.91484 0.95407 0.84133 0.90999 0.92852 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.68 59.85 0.64 2.26 16 2 N -1.02 -20.64 2.91 -121.76 -0.35 -21.00 16 3 C 0.14 2.32 4.96 -4.05 -0.02 2.30 16 4 C -0.10 -1.67 2.56 -90.54 -0.23 -1.90 16 5 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 6 C -0.11 -1.48 5.29 -26.61 -0.14 -1.62 16 7 C -0.11 -1.35 6.09 -26.65 -0.16 -1.52 16 8 C 0.06 0.72 6.55 -3.83 -0.03 0.70 16 9 N -0.70 -10.94 6.85 -113.81 -0.78 -11.72 16 10 C 0.07 1.25 4.25 -3.83 -0.02 1.23 16 11 S 2.71 71.56 4.15 -107.50 -0.45 71.11 16 12 O -1.00 -27.52 13.41 -57.18 -0.77 -28.28 16 13 O -1.01 -29.48 16.62 -57.18 -0.95 -30.43 16 14 C -1.02 -28.37 9.75 30.60 0.30 -28.07 16 15 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 16 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 17 N -0.85 -24.90 13.19 55.43 0.73 -24.17 16 18 Si 0.92 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 24 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 25 H 0.08 1.48 7.61 -51.93 -0.40 1.09 16 26 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.34 5.02 8.90 -39.29 -0.35 4.67 16 34 H 0.07 1.56 5.87 -51.93 -0.30 1.26 16 35 H 0.05 1.09 7.40 -51.93 -0.38 0.70 16 36 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -33.36 297.80 -8.42 -41.78 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.57 Total: 5.55 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 0.24 Total: -22.99 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.40 Total: -56.88 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -1.72 Total: -58.71 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 71.56 SS G_CDS: -0.45 Total: 71.11 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.36 -8.42 -41.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234333021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.519 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds