Wall clock time and date at job start Mon Mar 30 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52991 * 109.47137 * 85.00126 * 3 2 1 5 5 H 1.08995 * 109.50766 * 304.92403 * 4 3 2 6 6 C 1.53119 * 109.50410 * 184.80225 * 4 3 2 7 7 C 1.53122 * 109.16269 * 182.40422 * 6 4 3 8 8 C 1.53034 * 109.27694 * 57.65582 * 7 6 4 9 9 N 1.46851 * 109.52555 * 300.82197 * 8 7 6 10 10 C 1.46852 * 111.19686 * 61.74091 * 9 8 7 11 11 S 1.65606 * 120.00003 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40010 * 203.53824 * 11 2 1 13 13 O 1.42094 * 106.39890 * 336.45188 * 11 2 1 14 14 C 1.76194 * 107.22007 * 89.99703 * 11 2 1 15 15 H 1.08001 * 120.00253 * 359.97438 * 14 11 2 16 16 C 1.37882 * 119.99779 * 180.02562 * 14 11 2 17 17 N 1.31510 * 120.00017 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99681 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47349 * 90.00025 * 18 16 14 20 20 H 1.48495 * 109.46998 * 209.99510 * 18 16 14 21 21 H 1.48499 * 109.47345 * 329.99975 * 18 16 14 22 22 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 24 24 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 25 25 H 1.08999 * 109.47026 * 205.00489 * 3 2 1 26 26 H 1.09005 * 109.46953 * 325.00115 * 3 2 1 27 27 H 1.08997 * 109.52220 * 302.31115 * 6 4 3 28 28 H 1.09001 * 109.52179 * 62.50404 * 6 4 3 29 29 H 1.09000 * 109.50571 * 297.71349 * 7 6 4 30 30 H 1.09000 * 109.53344 * 177.61467 * 7 6 4 31 31 H 1.09001 * 109.46437 * 180.80491 * 8 7 6 32 32 H 1.09006 * 109.46351 * 60.83771 * 8 7 6 33 33 H 1.00898 * 111.00178 * 185.83850 * 9 8 7 34 34 H 1.08994 * 109.45826 * 178.24600 * 10 9 8 35 35 H 1.08994 * 109.45047 * 58.27158 * 10 9 8 36 36 H 0.97000 * 120.00096 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 1.4369 5 1 1.3596 1.8411 1.9007 6 6 3.0024 3.1554 1.4290 7 6 3.1996 3.6266 2.8725 8 6 4.0488 2.6012 3.6271 9 7 3.3756 1.2962 3.6068 10 6 3.2177 0.8016 2.2331 11 16 2.2930 -1.4342 -0.0006 12 8 3.5759 -1.1570 0.5439 13 8 1.4114 -2.4067 0.5435 14 6 2.5537 -1.8852 -1.6838 15 1 2.1866 -1.2499 -2.4762 16 6 3.2256 -3.0499 -1.9893 17 7 3.6722 -3.8238 -1.0243 18 14 3.5014 -3.5284 -3.7738 19 1 4.7872 -2.9555 -4.2469 20 1 3.5471 -5.0082 -3.8880 21 1 2.3893 -3.0017 -4.6051 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8900 0.5139 25 1 3.1857 1.1177 -0.4344 26 1 1.6501 2.0043 -0.5895 27 1 3.9697 3.0950 0.9302 28 1 2.3620 3.8611 0.8998 29 1 2.2292 3.7243 3.3592 30 1 3.7067 4.5915 2.8749 31 1 4.1791 2.9266 4.6592 32 1 5.0241 2.5143 3.1480 33 1 3.8684 0.6262 4.1780 34 1 2.7444 -0.1800 2.2529 35 1 4.1969 0.7232 1.7608 36 1 4.1452 -4.6429 -1.2392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234333021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:12 Heat of formation + Delta-G solvation = -125.386184 kcal Electronic energy + Delta-G solvation = -19219.739624 eV Core-core repulsion = 16249.551268 eV Total energy + Delta-G solvation = -2970.188357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.88210 -37.39992 -36.88478 -36.09858 -35.16733 -33.18698 -31.93622 -28.28750 -27.89270 -25.56962 -24.58256 -22.49784 -20.73273 -20.52502 -19.04224 -18.23340 -17.52205 -17.02206 -16.71855 -15.97396 -15.57467 -15.41325 -15.19245 -14.72459 -14.69225 -14.02005 -13.88542 -13.73510 -13.57436 -13.23964 -13.05620 -13.01821 -12.83392 -12.40310 -12.35255 -12.31084 -12.00553 -11.79508 -11.59533 -11.39307 -11.26972 -11.13056 -10.90636 -9.71877 -9.40287 -8.75109 -7.49474 0.35161 1.31418 1.31796 1.48043 2.19099 2.56079 2.87136 3.26814 3.78443 3.87498 3.98479 3.99477 4.18630 4.28199 4.41410 4.46562 4.55338 4.67002 4.73854 4.79710 4.83039 4.93420 4.97744 4.99903 5.06104 5.11049 5.17659 5.24897 5.35383 5.36360 5.57309 5.88660 6.03282 6.11236 6.43452 6.76924 8.19143 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.006486 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.729551 B = 4315.674038 C = 4428.126350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.013 6.013 3 C 0.127 3.873 4 C -0.100 4.100 5 H 0.081 0.919 6 C -0.112 4.112 7 C -0.111 4.111 8 C 0.049 3.951 9 N -0.699 5.699 10 C 0.070 3.930 11 S 2.717 3.283 12 O -1.024 7.024 13 O -1.048 7.048 14 C -1.047 5.047 15 H 0.115 0.885 16 C 0.069 3.931 17 N -0.894 5.894 18 Si 0.987 3.013 19 H -0.253 1.253 20 H -0.262 1.262 21 H -0.248 1.248 22 H 0.063 0.937 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.022 0.978 33 H 0.341 0.659 34 H 0.031 0.969 35 H 0.024 0.976 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 14.582 1.875 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.851 5.851 3 C 0.002 3.998 4 C -0.121 4.121 5 H 0.100 0.900 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.080 4.080 9 N -0.330 5.330 10 C -0.060 4.060 11 S 2.818 3.182 12 O -1.014 7.014 13 O -1.038 7.038 14 C -1.180 5.180 15 H 0.133 0.867 16 C -0.143 4.143 17 N -0.526 5.526 18 Si 0.805 3.195 19 H -0.177 1.177 20 H -0.186 1.186 21 H -0.171 1.171 22 H 0.081 0.919 23 H 0.117 0.883 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.159 0.841 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.421 14.251 2.771 14.718 hybrid contribution 1.158 -1.188 -1.331 2.127 sum -1.263 13.063 1.439 13.202 Atomic orbital electron populations 1.21584 0.78159 1.03678 1.02473 1.57388 1.15465 1.21171 1.91059 1.21442 0.96463 0.85188 0.96735 1.21638 0.99758 0.95547 0.95114 0.90034 1.21598 1.00887 0.94618 0.97876 1.21579 1.00773 0.97948 0.94609 1.22101 0.94965 0.89503 1.01384 1.60402 1.55538 1.05873 1.11168 1.21943 0.98494 0.96601 0.88919 1.00083 0.71544 0.70505 0.76024 1.93329 1.42615 1.84584 1.80830 1.93279 1.68163 1.60682 1.81674 1.31074 1.50174 1.17586 1.19146 0.86674 1.26020 0.89468 0.93213 1.05627 1.69989 1.32276 1.13755 1.36557 0.85174 0.80361 0.78539 0.75407 1.17706 1.18610 1.17116 0.91875 0.88268 0.92551 0.91801 0.87114 0.92394 0.88974 0.91119 0.89148 0.89193 0.95954 0.84145 0.95044 0.95776 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.84 10.68 127.77 1.36 4.20 16 2 N -1.01 -40.84 2.91 -539.13 -1.57 -42.41 16 3 C 0.13 4.20 4.96 86.38 0.43 4.63 16 4 C -0.10 -3.07 2.56 -10.74 -0.03 -3.09 16 5 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 6 C -0.11 -2.54 5.29 30.67 0.16 -2.38 16 7 C -0.11 -2.26 6.09 30.65 0.19 -2.07 16 8 C 0.05 1.19 6.55 86.32 0.57 1.76 16 9 N -0.70 -21.95 6.85 -513.99 -3.52 -25.46 16 10 C 0.07 2.69 4.25 86.33 0.37 3.05 16 11 S 2.72 148.28 4.15 -56.49 -0.23 148.05 16 12 O -1.02 -59.41 13.41 -128.00 -1.72 -61.12 16 13 O -1.05 -64.28 16.62 -128.00 -2.13 -66.41 16 14 C -1.05 -58.83 9.75 67.74 0.66 -58.17 16 15 H 0.12 5.88 7.81 -2.91 -0.02 5.85 16 16 C 0.07 3.92 5.46 84.66 0.46 4.38 16 17 N -0.89 -54.21 13.19 21.45 0.28 -53.93 16 18 Si 0.99 41.78 29.54 68.60 2.03 43.81 16 19 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.10 2.45 8.07 -2.39 -0.02 2.43 16 24 H 0.06 2.09 7.02 -2.38 -0.02 2.07 16 25 H 0.06 2.33 7.61 -2.39 -0.02 2.31 16 26 H 0.11 2.70 8.11 -2.38 -0.02 2.68 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.34 10.35 8.90 -89.70 -0.80 9.55 16 34 H 0.03 1.44 5.87 -2.39 -0.01 1.42 16 35 H 0.02 1.04 7.40 -2.39 -0.02 1.02 16 36 H 0.30 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -75.94 297.80 -2.42 -78.36 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.27 Total: 26.83 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 4.17 Total: -47.70 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -4.80 Total: -121.81 kcal Atomic # 8 Polarization: -123.69 SS G_CDS: -3.84 Total: -127.53 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 148.28 SS G_CDS: -0.23 Total: 148.05 kcal Total: -75.94 -2.42 -78.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234333021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.028 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds