Wall clock time and date at job start Mon Mar 30 2020 05:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.43575 * 2 1 4 4 C 1.54773 * 109.40327 * 119.89152 * 2 1 3 5 5 N 1.41446 * 109.98737 * 189.78263 * 4 2 1 6 6 C 1.46899 * 110.99946 * 168.31449 * 5 4 2 7 7 C 1.46189 * 116.34978 * 296.52324 * 5 4 2 8 8 C 1.51275 * 109.10347 * 87.02191 * 7 5 4 9 9 C 1.53457 * 109.48756 * 267.50449 * 8 7 5 10 10 N 1.44881 * 109.43548 * 240.08760 * 2 1 3 11 11 S 1.65598 * 118.74739 * 330.22650 * 10 2 1 12 12 O 1.42108 * 106.40167 * 195.33318 * 11 10 2 13 13 O 1.42096 * 106.40311 * 328.25214 * 11 10 2 14 14 C 1.76196 * 107.21805 * 81.79425 * 11 10 2 15 15 H 1.08001 * 120.00053 * 359.97438 * 14 11 10 16 16 C 1.37882 * 120.00084 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99842 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00091 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47295 * 59.99743 * 18 16 14 20 20 H 1.48496 * 109.47069 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47196 * 299.99754 * 18 16 14 22 22 H 1.09005 * 109.46366 * 188.91468 * 1 2 3 23 23 H 1.08991 * 109.46950 * 308.91060 * 1 2 3 24 24 H 1.08994 * 109.46883 * 68.91439 * 1 2 3 25 25 H 1.08995 * 109.38605 * 309.94649 * 4 2 1 26 26 H 1.09004 * 109.38298 * 69.73343 * 4 2 1 27 27 H 1.09004 * 109.46673 * 60.00754 * 6 5 4 28 28 H 1.09004 * 109.47161 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47587 * 300.00838 * 6 5 4 30 30 H 1.08997 * 109.53795 * 206.90823 * 7 5 4 31 31 H 1.09002 * 109.53083 * 327.06049 * 7 5 4 32 32 H 1.09001 * 109.44448 * 27.63787 * 8 7 5 33 33 H 1.08999 * 109.44807 * 147.58226 * 8 7 5 34 34 H 1.09004 * 109.10381 * 279.71709 * 9 8 7 35 35 H 1.09004 * 108.92663 * 160.77458 * 9 8 7 36 36 H 0.96997 * 120.00185 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0442 -0.7275 1.2656 5 7 3.4404 -0.5421 1.3962 6 6 3.9081 -0.9794 2.7184 7 6 4.2719 -1.1050 0.3338 8 6 4.3975 -0.0942 -0.7847 9 6 3.2979 -0.3433 -1.8257 10 7 2.0121 -0.6813 -1.1842 11 16 1.0887 -1.8899 -1.8392 12 8 1.9349 -2.6031 -2.7307 13 8 0.4064 -2.5056 -0.7555 14 6 -0.1468 -1.1218 -2.8332 15 1 -0.1829 -0.0454 -2.9138 16 6 -1.0681 -1.8949 -3.5074 17 7 -1.0244 -3.2057 -3.4089 18 14 -2.3784 -1.0807 -4.5607 19 1 -1.7280 -0.2827 -5.6309 20 1 -3.2385 -2.1238 -5.1750 21 1 -3.2101 -0.1882 -3.7140 22 1 -0.3632 -1.0153 0.1593 23 1 -0.3633 0.6454 0.7996 24 1 -0.3633 0.3697 -0.9588 25 1 1.5418 -0.3235 2.1444 26 1 1.8285 -1.7928 1.1833 27 1 3.6821 -2.0373 2.8520 28 1 4.9847 -0.8254 2.7922 29 1 3.4046 -0.3997 3.4920 30 1 5.2611 -1.3360 0.7288 31 1 3.8096 -2.0158 -0.0469 32 1 4.2944 0.9118 -0.3779 33 1 5.3741 -0.1960 -1.2579 34 1 3.6003 -1.1656 -2.4742 35 1 3.1707 0.5564 -2.4278 36 1 -1.6728 -3.7496 -3.8829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235652657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:53 Heat of formation + Delta-G solvation = -74.547753 kcal Electronic energy + Delta-G solvation = -19803.245446 eV Core-core repulsion = 16835.261609 eV Total energy + Delta-G solvation = -2967.983837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.96090 -35.56665 -35.02399 -33.93645 -33.09638 -32.90911 -28.94992 -26.98141 -25.94963 -25.73923 -22.83412 -20.75808 -20.20410 -18.44331 -16.92927 -16.18168 -15.88623 -15.37575 -15.27377 -14.75281 -14.24328 -14.01216 -13.62148 -13.06381 -12.84627 -12.39057 -12.23778 -12.04500 -11.82673 -11.63667 -11.44591 -11.20771 -11.15471 -11.01472 -10.86287 -10.63736 -10.48959 -10.30862 -10.11772 -10.05428 -9.37032 -9.21160 -8.86907 -8.10954 -7.88757 -6.67818 -5.28337 2.32599 3.08976 3.13507 3.19193 4.06695 4.19224 4.50859 4.65798 5.14538 5.22399 5.40512 5.48073 5.60740 5.67966 5.73041 5.73543 5.90191 5.92998 5.93986 6.05136 6.11137 6.23729 6.24704 6.32495 6.42157 6.49733 6.56016 6.75900 6.88591 7.27450 7.34893 7.38691 7.66736 7.80405 7.99094 8.90507 10.25659 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034956 B = 0.007634 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.807422 B = 3666.860216 C = 3820.693201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.171 3.829 3 H 0.076 0.924 4 C 0.054 3.946 5 N -0.567 5.567 6 C 0.033 3.967 7 C 0.072 3.928 8 C -0.125 4.125 9 C 0.116 3.884 10 N -1.006 6.006 11 S 2.715 3.285 12 O -1.011 7.011 13 O -1.002 7.002 14 C -1.017 5.017 15 H 0.103 0.897 16 C 0.133 3.867 17 N -0.847 5.847 18 Si 0.918 3.082 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.264 1.264 22 H 0.110 0.890 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 6.938 6.938 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C 0.063 3.937 3 H 0.094 0.906 4 C -0.076 4.076 5 N -0.291 5.291 6 C -0.114 4.114 7 C -0.055 4.055 8 C -0.164 4.164 9 C -0.009 4.009 10 N -0.841 5.841 11 S 2.817 3.183 12 O -1.001 7.001 13 O -0.992 6.992 14 C -1.150 5.150 15 H 0.121 0.879 16 C -0.084 4.084 17 N -0.477 5.477 18 Si 0.742 3.258 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.188 1.188 22 H 0.128 0.872 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.990 6.289 7.015 11.731 hybrid contribution -1.102 0.153 -0.750 1.342 sum 5.888 6.442 6.264 10.743 Atomic orbital electron populations 1.22935 0.93931 1.06971 1.03758 1.20566 0.93757 0.96032 0.83344 0.90622 1.21890 0.86703 1.00063 0.98949 1.58361 1.04568 1.63708 1.02463 1.22317 1.00301 0.98183 0.90639 1.21501 0.95921 0.96409 0.91679 1.21756 0.98135 1.00528 0.96006 1.21494 0.83236 1.01592 0.94621 1.57721 1.31181 1.56812 1.38435 1.00490 0.73079 0.71558 0.73217 1.93319 1.69384 1.71239 1.66163 1.93282 1.74540 1.74984 1.56389 1.30640 1.32618 1.04777 1.46947 0.87914 1.24734 0.96371 0.94048 0.93283 1.69887 1.35116 1.04637 1.38066 0.86245 0.79936 0.79619 0.80048 1.18901 1.20171 1.18812 0.87183 0.91993 0.89965 0.90581 0.94099 0.95965 0.91916 0.91806 0.91639 0.94022 0.90593 0.91044 0.89117 0.92667 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.14 7.97 37.16 0.30 -3.84 16 2 C 0.17 3.12 2.60 -67.86 -0.18 2.94 16 3 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 4 C 0.05 0.93 4.64 -5.74 -0.03 0.90 16 5 N -0.57 -8.59 4.09 -247.82 -1.01 -9.61 16 6 C 0.03 0.41 9.45 60.06 0.57 0.98 16 7 C 0.07 1.11 5.31 -5.08 -0.03 1.08 16 8 C -0.12 -1.78 5.78 -27.36 -0.16 -1.94 16 9 C 0.12 2.06 6.25 -3.20 -0.02 2.04 16 10 N -1.01 -20.84 2.44 -106.31 -0.26 -21.10 16 11 S 2.71 72.07 4.32 -107.50 -0.46 71.61 16 12 O -1.01 -29.70 16.26 -57.17 -0.93 -30.63 16 13 O -1.00 -28.29 13.87 -57.17 -0.79 -29.09 16 14 C -1.02 -27.69 8.09 30.60 0.25 -27.45 16 15 H 0.10 2.57 7.04 -52.49 -0.37 2.20 16 16 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 17 N -0.85 -24.88 13.19 55.43 0.73 -24.15 16 18 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 22 H 0.11 2.44 5.37 -51.93 -0.28 2.16 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 1.64 5.92 -51.93 -0.31 1.33 16 25 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 26 H 0.04 0.82 7.26 -51.93 -0.38 0.44 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 29 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.07 0.83 7.47 -51.93 -0.39 0.45 16 31 H 0.04 0.76 7.32 -51.93 -0.38 0.38 16 32 H 0.08 1.04 7.98 -51.93 -0.41 0.63 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.74 6.59 -51.93 -0.34 1.40 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 288.25 15.07 4.34 4.34 Total: -1.00 -33.08 288.25 -8.14 -41.22 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.34 Total: 3.57 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 0.61 Total: -21.68 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.54 Total: -54.85 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -1.72 Total: -59.71 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 72.07 SS G_CDS: -0.46 Total: 71.61 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.08 -8.14 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235652657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.328 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds