Wall clock time and date at job start Mon Mar 30 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.43575 * 2 1 4 4 C 1.54773 * 109.40327 * 119.89152 * 2 1 3 5 5 N 1.41446 * 109.98737 * 189.78263 * 4 2 1 6 6 C 1.46899 * 110.99946 * 168.31449 * 5 4 2 7 7 C 1.46189 * 116.34978 * 296.52324 * 5 4 2 8 8 C 1.51275 * 109.10347 * 87.02191 * 7 5 4 9 9 C 1.53457 * 109.48756 * 267.50449 * 8 7 5 10 10 N 1.44881 * 109.43548 * 240.08760 * 2 1 3 11 11 S 1.65598 * 118.74739 * 330.22650 * 10 2 1 12 12 O 1.42108 * 106.40167 * 195.33318 * 11 10 2 13 13 O 1.42096 * 106.40311 * 328.25214 * 11 10 2 14 14 C 1.76196 * 107.21805 * 81.79425 * 11 10 2 15 15 H 1.08001 * 120.00053 * 359.97438 * 14 11 10 16 16 C 1.37882 * 120.00084 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99842 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00091 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47295 * 59.99743 * 18 16 14 20 20 H 1.48496 * 109.47069 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47196 * 299.99754 * 18 16 14 22 22 H 1.09005 * 109.46366 * 188.91468 * 1 2 3 23 23 H 1.08991 * 109.46950 * 308.91060 * 1 2 3 24 24 H 1.08994 * 109.46883 * 68.91439 * 1 2 3 25 25 H 1.08995 * 109.38605 * 309.94649 * 4 2 1 26 26 H 1.09004 * 109.38298 * 69.73343 * 4 2 1 27 27 H 1.09004 * 109.46673 * 60.00754 * 6 5 4 28 28 H 1.09004 * 109.47161 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47587 * 300.00838 * 6 5 4 30 30 H 1.08997 * 109.53795 * 206.90823 * 7 5 4 31 31 H 1.09002 * 109.53083 * 327.06049 * 7 5 4 32 32 H 1.09001 * 109.44448 * 27.63787 * 8 7 5 33 33 H 1.08999 * 109.44807 * 147.58226 * 8 7 5 34 34 H 1.09004 * 109.10381 * 279.71709 * 9 8 7 35 35 H 1.09004 * 108.92663 * 160.77458 * 9 8 7 36 36 H 0.96997 * 120.00185 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0442 -0.7275 1.2656 5 7 3.4404 -0.5421 1.3962 6 6 3.9081 -0.9794 2.7184 7 6 4.2719 -1.1050 0.3338 8 6 4.3975 -0.0942 -0.7847 9 6 3.2979 -0.3433 -1.8257 10 7 2.0121 -0.6813 -1.1842 11 16 1.0887 -1.8899 -1.8392 12 8 1.9349 -2.6031 -2.7307 13 8 0.4064 -2.5056 -0.7555 14 6 -0.1468 -1.1218 -2.8332 15 1 -0.1829 -0.0454 -2.9138 16 6 -1.0681 -1.8949 -3.5074 17 7 -1.0244 -3.2057 -3.4089 18 14 -2.3784 -1.0807 -4.5607 19 1 -1.7280 -0.2827 -5.6309 20 1 -3.2385 -2.1238 -5.1750 21 1 -3.2101 -0.1882 -3.7140 22 1 -0.3632 -1.0153 0.1593 23 1 -0.3633 0.6454 0.7996 24 1 -0.3633 0.3697 -0.9588 25 1 1.5418 -0.3235 2.1444 26 1 1.8285 -1.7928 1.1833 27 1 3.6821 -2.0373 2.8520 28 1 4.9847 -0.8254 2.7922 29 1 3.4046 -0.3997 3.4920 30 1 5.2611 -1.3360 0.7288 31 1 3.8096 -2.0158 -0.0469 32 1 4.2944 0.9118 -0.3779 33 1 5.3741 -0.1960 -1.2579 34 1 3.6003 -1.1656 -2.4742 35 1 3.1707 0.5564 -2.4278 36 1 -1.6728 -3.7496 -3.8829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235652657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:52 Heat of formation + Delta-G solvation = -100.598431 kcal Electronic energy + Delta-G solvation = -19804.375088 eV Core-core repulsion = 16835.261609 eV Total energy + Delta-G solvation = -2969.113479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28586 -37.63571 -36.44935 -36.08914 -35.17408 -34.32067 -30.34951 -28.59056 -27.72625 -27.06633 -24.15013 -22.28814 -21.54253 -20.41946 -18.87186 -17.90488 -17.47824 -17.10270 -16.53815 -16.31575 -15.94438 -15.70178 -15.29558 -14.55002 -14.13832 -14.04436 -13.80284 -13.62046 -13.39160 -13.07044 -12.97553 -12.93363 -12.82076 -12.52486 -12.42311 -12.31275 -12.21981 -11.91955 -11.70318 -11.60468 -11.22835 -11.12662 -10.90391 -9.70544 -9.15289 -8.72989 -7.44724 0.36154 1.33080 1.35071 1.47762 2.20400 2.58962 2.78243 3.02576 3.74403 3.90325 3.99637 4.06051 4.20691 4.23995 4.43199 4.56141 4.59065 4.61207 4.67990 4.73964 4.76657 4.86987 4.93998 4.97709 5.03598 5.11223 5.22530 5.23791 5.34405 5.42294 5.69509 5.92241 6.13609 6.28475 6.41484 6.79085 8.21716 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034956 B = 0.007634 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.807422 B = 3666.860216 C = 3820.693201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.166 3.834 3 H 0.108 0.892 4 C 0.060 3.940 5 N -0.563 5.563 6 C 0.030 3.970 7 C 0.066 3.934 8 C -0.113 4.113 9 C 0.104 3.896 10 N -1.000 6.000 11 S 2.713 3.287 12 O -1.052 7.052 13 O -1.032 7.032 14 C -1.031 5.031 15 H 0.120 0.880 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.986 3.014 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.247 1.247 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.101 0.899 26 H -0.001 1.001 27 H 0.010 0.990 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.000 1.000 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 9.859 7.540 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C 0.059 3.941 3 H 0.126 0.874 4 C -0.071 4.071 5 N -0.287 5.287 6 C -0.117 4.117 7 C -0.062 4.062 8 C -0.152 4.152 9 C -0.020 4.020 10 N -0.838 5.838 11 S 2.816 3.184 12 O -1.043 7.043 13 O -1.022 7.022 14 C -1.164 5.164 15 H 0.138 0.862 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.804 3.196 19 H -0.175 1.175 20 H -0.190 1.190 21 H -0.171 1.171 22 H 0.091 0.909 23 H 0.120 0.880 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.017 0.983 27 H 0.029 0.971 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.018 0.982 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.581 9.205 7.635 14.159 hybrid contribution -1.199 -0.748 -0.856 1.652 sum 6.382 8.457 6.779 12.578 Atomic orbital electron populations 1.22871 0.94745 1.05393 1.04553 1.20852 0.93305 0.97313 0.82628 0.87443 1.21806 0.88468 0.97495 0.99363 1.58480 1.03318 1.63218 1.03672 1.22455 1.01995 0.97736 0.89484 1.21635 0.97043 0.95092 0.92403 1.21745 0.97978 1.00880 0.94630 1.21802 0.82969 1.01411 0.95858 1.57317 1.31636 1.55801 1.39090 1.00178 0.73054 0.72393 0.72756 1.93253 1.70277 1.73234 1.67486 1.93252 1.75403 1.76657 1.56883 1.30964 1.32785 1.05708 1.46984 0.86227 1.25993 0.99027 0.94529 0.94624 1.69995 1.36696 1.06559 1.39700 0.85221 0.76920 0.79025 0.78418 1.17508 1.18990 1.17073 0.90930 0.88016 0.91190 0.88066 0.98320 0.97133 0.89534 0.90075 0.88618 0.98177 0.88852 0.88003 0.91566 0.90590 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.11 7.97 71.98 0.57 -7.54 16 2 C 0.17 5.83 2.60 45.90 0.12 5.95 16 3 H 0.11 3.15 8.11 -2.39 -0.02 3.13 16 4 C 0.06 1.98 4.64 87.90 0.41 2.39 16 5 N -0.56 -15.76 4.09 -937.95 -3.84 -19.60 16 6 C 0.03 0.66 9.45 127.69 1.21 1.87 16 7 C 0.07 1.90 5.31 85.87 0.46 2.36 16 8 C -0.11 -2.91 5.78 30.18 0.17 -2.74 16 9 C 0.10 3.62 6.25 86.32 0.54 4.15 16 10 N -1.00 -41.54 2.44 -490.24 -1.20 -42.73 16 11 S 2.71 149.83 4.32 -56.49 -0.24 149.59 16 12 O -1.05 -65.07 16.26 -128.00 -2.08 -67.15 16 13 O -1.03 -61.56 13.87 -128.00 -1.78 -63.33 16 14 C -1.03 -57.09 8.09 67.74 0.55 -56.54 16 15 H 0.12 5.97 7.04 -2.91 -0.02 5.95 16 16 C 0.07 3.96 5.46 84.66 0.46 4.42 16 17 N -0.90 -54.48 13.19 21.45 0.28 -54.20 16 18 Si 0.99 41.55 29.54 68.60 2.03 43.58 16 19 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 22 H 0.07 3.31 5.37 -2.38 -0.01 3.30 16 23 H 0.10 2.88 8.14 -2.39 -0.02 2.87 16 24 H 0.07 2.75 5.92 -2.39 -0.01 2.74 16 25 H 0.10 2.80 7.92 -2.39 -0.02 2.79 16 26 H 0.00 -0.06 7.26 -2.39 -0.02 -0.08 16 27 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.09 1.49 7.75 -2.38 -0.02 1.47 16 29 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 30 H 0.10 2.16 7.47 -2.39 -0.02 2.15 16 31 H 0.00 -0.01 7.32 -2.39 -0.02 -0.03 16 32 H 0.09 2.14 7.98 -2.39 -0.02 2.12 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.61 6.59 -2.39 -0.02 2.60 16 35 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.30 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -75.86 288.25 -1.28 -77.14 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 1.06 Total: 22.38 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 4.49 Total: -45.67 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.75 Total: -116.54 kcal Atomic # 8 Polarization: -126.63 SS G_CDS: -3.86 Total: -130.48 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 149.83 SS G_CDS: -0.24 Total: 149.59 kcal Total: -75.86 -1.28 -77.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235652657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.455 kcal (2) G-P(sol) polarization free energy of solvation -75.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds