Wall clock time and date at job start Mon Mar 30 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51602 * 2 1 4 4 C 1.53245 * 109.49171 * 120.06475 * 2 1 3 5 5 N 1.47082 * 108.68191 * 173.88501 * 4 2 1 6 6 S 1.65598 * 120.87867 * 128.69547 * 5 4 2 7 7 O 1.42098 * 104.27619 * 206.07068 * 6 5 4 8 8 O 1.42095 * 104.28076 * 333.92998 * 6 5 4 9 9 C 1.81404 * 104.44851 * 90.00103 * 6 5 4 10 10 C 1.53003 * 109.46934 * 179.97438 * 9 6 5 11 11 C 1.50706 * 109.46881 * 179.97438 * 10 9 6 12 12 H 1.07994 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99661 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00077 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99506 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47699 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47276 * 119.99872 * 15 13 11 18 18 H 1.48509 * 109.47006 * 239.99750 * 15 13 11 19 19 C 1.47078 * 118.23766 * 308.71823 * 5 4 2 20 20 C 1.53240 * 108.52191 * 51.18685 * 19 5 4 21 21 N 1.46905 * 109.33578 * 306.16809 * 20 19 5 22 22 H 1.09000 * 109.46907 * 299.93694 * 1 2 3 23 23 H 1.09004 * 109.46826 * 59.93144 * 1 2 3 24 24 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.62924 * 54.07786 * 4 2 1 26 26 H 1.09005 * 109.62711 * 293.69250 * 4 2 1 27 27 H 1.09002 * 109.47328 * 299.99478 * 9 6 5 28 28 H 1.08999 * 109.47016 * 60.00257 * 9 6 5 29 29 H 1.08996 * 109.47132 * 300.00087 * 10 9 6 30 30 H 1.08999 * 109.47001 * 60.00318 * 10 9 6 31 31 H 0.97000 * 119.99769 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.62602 * 170.89319 * 19 5 4 33 33 H 1.08998 * 109.62917 * 291.47345 * 19 5 4 34 34 H 1.08995 * 109.49181 * 66.12915 * 20 19 5 35 35 H 1.09001 * 109.49150 * 186.18356 * 20 19 5 36 36 H 1.00900 * 110.99249 * 187.25388 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7237 1.2503 5 7 3.5045 -0.8431 1.1602 6 16 4.4755 -0.3563 2.4102 7 8 5.7115 -0.0329 1.7884 8 8 3.7114 0.6359 3.0817 9 6 4.6523 -1.8338 3.4478 10 6 5.5398 -1.5088 4.6510 11 6 5.6862 -2.7360 5.5133 12 1 5.1950 -3.6556 5.2315 13 6 6.4463 -2.6844 6.6625 14 7 7.0439 -1.5644 7.0058 15 14 6.6283 -4.2058 7.7309 16 1 5.8637 -5.3277 7.1293 17 1 8.0632 -4.5774 7.8228 18 1 6.1025 -3.9218 9.0904 19 6 4.0824 -1.4057 -0.0697 20 6 3.4946 -0.6570 -1.2706 21 7 2.0278 -0.6974 -1.1984 22 1 -0.3633 0.5129 0.8906 23 1 -0.3633 0.5149 -0.8894 24 1 -0.3633 -1.0277 -0.0005 25 1 1.5957 -1.7169 1.3064 26 1 1.7746 -0.1519 2.1391 27 1 3.6700 -2.1529 3.7961 28 1 5.1091 -2.6341 2.8656 29 1 6.5220 -1.1899 4.3024 30 1 5.0834 -0.7084 5.2334 31 1 7.5784 -1.5280 7.8145 32 1 5.1653 -1.2819 -0.0554 33 1 3.8330 -2.4644 -0.1404 34 1 3.8312 0.3795 -1.2532 35 1 3.8270 -1.1321 -2.1936 36 1 1.6141 -0.3154 -2.0357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237623394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:16 Heat of formation + Delta-G solvation = -77.169237 kcal Electronic energy + Delta-G solvation = -18502.319005 eV Core-core repulsion = 15534.221492 eV Total energy + Delta-G solvation = -2968.097513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.78841 -36.67894 -35.45333 -33.90758 -33.85434 -32.38226 -31.15181 -27.57348 -25.74592 -25.31732 -22.67168 -21.53548 -20.35569 -18.44390 -17.68992 -16.61162 -16.02347 -15.72858 -15.43791 -15.24010 -14.63497 -14.54308 -14.39203 -13.73575 -13.38048 -12.72543 -12.53048 -12.29891 -12.16614 -12.10784 -11.75139 -11.60073 -11.55974 -11.22336 -11.09580 -11.08190 -10.95871 -10.72437 -10.39036 -10.38728 -9.77319 -9.36299 -8.96606 -8.50768 -8.47421 -6.12553 -4.18034 0.74911 3.00495 3.25492 3.32745 3.36413 3.93620 4.29756 4.39232 4.52224 4.60331 4.84381 5.02753 5.11985 5.16365 5.22782 5.28109 5.38917 5.52432 5.59647 5.65233 5.67544 5.76054 5.81665 5.88284 6.06353 6.14150 6.49650 6.64272 6.80394 7.16318 7.30009 7.35859 7.80871 8.17690 8.85721 9.46846 10.98579 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.004773 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.775418 B = 5864.642551 C = 5970.588748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 H 0.044 0.956 4 C 0.126 3.874 5 N -1.009 6.009 6 S 2.589 3.411 7 O -0.965 6.965 8 O -0.965 6.965 9 C -0.587 4.587 10 C 0.027 3.973 11 C -0.519 4.519 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.121 3.879 20 C 0.048 3.952 21 N -0.684 5.684 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 0.755 -15.905 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 H 0.062 0.938 4 C 0.000 4.000 5 N -0.846 5.846 6 S 2.689 3.311 7 O -0.956 6.956 8 O -0.956 6.956 9 C -0.721 4.721 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.005 4.005 20 C -0.083 4.083 21 N -0.316 5.316 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.550 1.116 -15.391 18.694 hybrid contribution 0.159 -0.519 0.440 0.698 sum -10.392 0.597 -14.952 18.218 Atomic orbital electron populations 1.21783 0.93590 1.02855 1.02100 1.21889 0.95323 0.95732 0.91105 0.93772 1.21541 0.79228 1.01152 0.98057 1.58012 1.16230 1.80177 1.30143 1.05705 0.73324 0.77910 0.74169 1.93520 1.44106 1.83364 1.74565 1.93520 1.70750 1.56285 1.75002 1.30482 1.10203 1.18020 1.13388 1.18977 0.93570 0.99155 0.89482 1.21049 1.31299 0.96321 1.07224 0.91974 1.25071 0.95311 0.96451 0.97662 1.69964 1.32087 1.25837 1.25008 0.86409 0.77973 0.82671 0.80208 1.19629 1.20782 1.20789 1.21506 0.98443 0.97706 0.82851 1.22236 0.87928 0.99382 0.98780 1.60416 1.06582 1.59789 1.04837 0.91533 0.92553 0.91456 0.90884 0.88574 0.86260 0.86250 0.94876 0.94881 0.92583 0.88480 0.90881 0.94598 0.89688 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.45 37.16 0.35 -0.83 16 2 C 0.07 0.76 3.20 -67.35 -0.22 0.54 16 3 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.13 1.58 5.89 -3.60 -0.02 1.55 16 5 N -1.01 -14.44 3.26 -113.23 -0.37 -14.81 16 6 S 2.59 47.78 5.47 -107.50 -0.59 47.19 16 7 O -0.97 -20.20 16.60 -57.54 -0.96 -21.15 16 8 O -0.97 -20.23 16.61 -57.54 -0.96 -21.18 16 9 C -0.59 -11.48 6.12 37.16 0.23 -11.25 16 10 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 11 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 15 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.12 1.47 6.62 -3.60 -0.02 1.45 16 20 C 0.05 0.49 6.70 -3.70 -0.02 0.47 16 21 N -0.68 -6.70 6.50 -106.16 -0.69 -7.39 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.25 6.87 -51.93 -0.36 0.89 16 27 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 28 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.10 1.22 6.87 -51.93 -0.36 0.86 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.34 2.64 8.78 -39.29 -0.35 2.30 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -34.24 306.39 -9.16 -43.40 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.67 Total: -0.26 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -0.26 Total: -20.77 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.32 Total: -48.09 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.91 Total: -42.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 47.78 SS G_CDS: -0.59 Total: 47.19 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.24 -9.16 -43.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237623394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.770 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds