Wall clock time and date at job start Mon Mar 30 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51602 * 2 1 4 4 C 1.53245 * 109.49171 * 120.06475 * 2 1 3 5 5 N 1.47082 * 108.68191 * 173.88501 * 4 2 1 6 6 S 1.65598 * 120.87867 * 128.69547 * 5 4 2 7 7 O 1.42098 * 104.27619 * 206.07068 * 6 5 4 8 8 O 1.42095 * 104.28076 * 333.92998 * 6 5 4 9 9 C 1.81404 * 104.44851 * 90.00103 * 6 5 4 10 10 C 1.53003 * 109.46934 * 179.97438 * 9 6 5 11 11 C 1.50706 * 109.46881 * 179.97438 * 10 9 6 12 12 H 1.07994 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99661 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00077 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99506 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47699 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47276 * 119.99872 * 15 13 11 18 18 H 1.48509 * 109.47006 * 239.99750 * 15 13 11 19 19 C 1.47078 * 118.23766 * 308.71823 * 5 4 2 20 20 C 1.53240 * 108.52191 * 51.18685 * 19 5 4 21 21 N 1.46905 * 109.33578 * 306.16809 * 20 19 5 22 22 H 1.09000 * 109.46907 * 299.93694 * 1 2 3 23 23 H 1.09004 * 109.46826 * 59.93144 * 1 2 3 24 24 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.62924 * 54.07786 * 4 2 1 26 26 H 1.09005 * 109.62711 * 293.69250 * 4 2 1 27 27 H 1.09002 * 109.47328 * 299.99478 * 9 6 5 28 28 H 1.08999 * 109.47016 * 60.00257 * 9 6 5 29 29 H 1.08996 * 109.47132 * 300.00087 * 10 9 6 30 30 H 1.08999 * 109.47001 * 60.00318 * 10 9 6 31 31 H 0.97000 * 119.99769 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.62602 * 170.89319 * 19 5 4 33 33 H 1.08998 * 109.62917 * 291.47345 * 19 5 4 34 34 H 1.08995 * 109.49181 * 66.12915 * 20 19 5 35 35 H 1.09001 * 109.49150 * 186.18356 * 20 19 5 36 36 H 1.00900 * 110.99249 * 187.25388 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7237 1.2503 5 7 3.5045 -0.8431 1.1602 6 16 4.4755 -0.3563 2.4102 7 8 5.7115 -0.0329 1.7884 8 8 3.7114 0.6359 3.0817 9 6 4.6523 -1.8338 3.4478 10 6 5.5398 -1.5088 4.6510 11 6 5.6862 -2.7360 5.5133 12 1 5.1950 -3.6556 5.2315 13 6 6.4463 -2.6844 6.6625 14 7 7.0439 -1.5644 7.0058 15 14 6.6283 -4.2058 7.7309 16 1 5.8637 -5.3277 7.1293 17 1 8.0632 -4.5774 7.8228 18 1 6.1025 -3.9218 9.0904 19 6 4.0824 -1.4057 -0.0697 20 6 3.4946 -0.6570 -1.2706 21 7 2.0278 -0.6974 -1.1984 22 1 -0.3633 0.5129 0.8906 23 1 -0.3633 0.5149 -0.8894 24 1 -0.3633 -1.0277 -0.0005 25 1 1.5957 -1.7169 1.3064 26 1 1.7746 -0.1519 2.1391 27 1 3.6700 -2.1529 3.7961 28 1 5.1091 -2.6341 2.8656 29 1 6.5220 -1.1899 4.3024 30 1 5.0834 -0.7084 5.2334 31 1 7.5784 -1.5280 7.8145 32 1 5.1653 -1.2819 -0.0554 33 1 3.8330 -2.4644 -0.1404 34 1 3.8312 0.3795 -1.2532 35 1 3.8270 -1.1321 -2.1936 36 1 1.6141 -0.3154 -2.0357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237623394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:16 Heat of formation + Delta-G solvation = -104.439920 kcal Electronic energy + Delta-G solvation = -18503.501550 eV Core-core repulsion = 15534.221492 eV Total energy + Delta-G solvation = -2969.280059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70554 -38.27930 -37.06016 -35.91375 -34.86336 -33.23131 -33.14116 -28.38373 -27.63367 -26.45104 -23.71024 -23.31981 -21.31896 -19.79440 -19.15544 -18.44852 -17.34760 -17.07959 -16.77516 -16.48877 -16.05577 -15.90522 -15.28777 -15.11181 -14.72074 -14.44363 -13.75220 -13.65996 -13.47416 -13.31449 -13.21364 -12.97383 -12.95683 -12.80151 -12.59860 -12.28333 -12.12777 -12.09610 -12.02948 -11.83938 -11.66053 -11.16527 -10.67040 -10.13110 -9.36603 -8.27496 -6.41915 -0.75629 1.40622 1.41300 1.54825 1.68765 2.37361 2.80762 3.05906 3.12478 3.18060 3.60552 3.91734 4.02232 4.08819 4.21580 4.25547 4.30427 4.43649 4.53034 4.72496 4.75217 4.82618 4.94008 5.00981 5.05374 5.16022 5.23965 5.24988 5.37095 5.58465 5.66826 5.97766 6.04410 6.49570 6.71845 7.28595 8.85107 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.004773 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.775418 B = 5864.642551 C = 5970.588748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.027 0.973 4 C 0.116 3.884 5 N -1.000 6.000 6 S 2.612 3.388 7 O -0.993 6.993 8 O -0.994 6.994 9 C -0.585 4.585 10 C 0.020 3.980 11 C -0.539 4.539 12 H 0.075 0.925 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.256 1.256 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.110 3.890 20 C 0.049 3.951 21 N -0.679 5.679 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.268 0.732 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.022 0.978 35 H 0.114 0.886 36 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.520 -1.169 -17.249 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 H 0.045 0.955 4 C -0.010 4.010 5 N -0.840 5.840 6 S 2.711 3.289 7 O -0.984 6.984 8 O -0.985 6.985 9 C -0.717 4.717 10 C -0.019 4.019 11 C -0.578 4.578 12 H 0.094 0.906 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.799 3.201 16 H -0.179 1.179 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.015 4.015 20 C -0.082 4.082 21 N -0.313 5.313 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.040 0.960 35 H 0.132 0.868 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.067 -0.814 -16.746 20.657 hybrid contribution 0.589 0.111 0.766 0.972 sum -11.478 -0.704 -15.980 19.688 Atomic orbital electron populations 1.21746 0.91435 1.03529 1.02976 1.21887 0.96976 0.94535 0.90717 0.95460 1.21839 0.77766 1.02489 0.98863 1.57669 1.16777 1.80146 1.29358 1.04731 0.72835 0.77144 0.74213 1.93476 1.46050 1.83744 1.75104 1.93474 1.71291 1.57452 1.76241 1.30379 1.10058 1.19710 1.11595 1.18835 0.93362 0.98050 0.91643 1.21543 1.31258 0.97289 1.07738 0.90644 1.26130 0.94829 0.99897 0.99342 1.70107 1.33073 1.28445 1.25817 0.85237 0.78189 0.78628 0.78024 1.17928 1.20278 1.20291 1.21820 0.98252 0.99119 0.82304 1.22264 0.88319 0.98638 0.99025 1.60409 1.06165 1.59519 1.05161 0.91405 0.91033 0.90812 0.88875 0.89526 0.84208 0.84142 0.97571 0.97601 0.92345 0.89227 0.88741 0.95975 0.86806 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.45 71.98 0.68 -1.23 16 2 C 0.07 1.37 3.20 44.92 0.14 1.51 16 3 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 4 C 0.12 2.70 5.89 86.35 0.51 3.20 16 5 N -1.00 -27.46 3.26 -512.14 -1.67 -29.13 16 6 S 2.61 97.40 5.47 -56.49 -0.31 97.09 16 7 O -0.99 -42.46 16.60 -127.65 -2.12 -44.58 16 8 O -0.99 -42.69 16.61 -127.65 -2.12 -44.80 16 9 C -0.59 -22.78 6.12 71.98 0.44 -22.34 16 10 C 0.02 1.07 4.98 29.85 0.15 1.21 16 11 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 13 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 14 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 15 Si 0.98 43.48 29.54 68.60 2.03 45.51 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 19 C 0.11 2.47 6.62 86.35 0.57 3.04 16 20 C 0.05 0.89 6.70 86.38 0.58 1.47 16 21 N -0.68 -11.35 6.50 -489.77 -3.18 -14.54 16 22 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 2.19 6.87 -2.38 -0.02 2.17 16 27 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 28 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.09 2.16 6.87 -2.38 -0.02 2.14 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.36 4.38 8.78 -89.69 -0.79 3.59 16 Total: -1.00 -74.88 306.39 -3.05 -77.93 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.27 Total: 12.46 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 3.77 Total: -42.90 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -4.57 Total: -100.70 kcal Atomic # 8 Polarization: -85.15 SS G_CDS: -4.24 Total: -89.39 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 97.40 SS G_CDS: -0.31 Total: 97.09 kcal Total: -74.88 -3.05 -77.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237623394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.508 kcal (2) G-P(sol) polarization free energy of solvation -74.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds