Wall clock time and date at job start Mon Mar 30 2020 05:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21293 * 119.99766 * 2 1 4 4 N 1.34774 * 120.00400 * 179.97438 * 2 1 3 5 5 C 1.39960 * 120.00137 * 184.61739 * 4 2 1 6 6 C 1.38986 * 119.99395 * 144.89442 * 5 4 2 7 7 C 1.38215 * 120.21707 * 180.02562 * 6 5 4 8 8 C 1.38016 * 120.22815 * 359.96920 * 7 6 5 9 9 C 1.39583 * 119.99234 * 0.07436 * 8 7 6 10 10 C 1.47859 * 120.10918 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00117 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00298 * 359.95678 * 10 9 8 13 13 C 1.46499 * 120.00100 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.47106 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99839 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99845 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99942 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99800 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46996 * 90.00186 * 18 16 14 20 20 H 1.48493 * 109.46915 * 210.00031 * 18 16 14 21 21 H 1.48501 * 109.46991 * 330.00400 * 18 16 14 22 22 C 1.38590 * 119.99815 * 324.91801 * 5 4 2 23 23 H 1.08998 * 109.46924 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46950 * 299.99503 * 1 2 3 25 25 H 1.08993 * 109.47281 * 60.00052 * 1 2 3 26 26 H 0.96998 * 119.99970 * 4.62697 * 4 2 1 27 27 H 1.07992 * 119.89538 * 359.97438 * 6 5 4 28 28 H 1.08006 * 119.88482 * 180.02562 * 7 6 5 29 29 H 1.07993 * 120.00661 * 180.02562 * 8 7 6 30 30 H 0.97003 * 120.00261 * 359.97438 * 12 10 9 31 31 H 1.08994 * 109.47681 * 299.99604 * 13 12 10 32 32 H 1.08999 * 109.47227 * 60.00043 * 13 12 10 33 33 H 0.97004 * 119.99332 * 179.97438 * 17 16 14 34 34 H 1.08005 * 120.11561 * 359.72079 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5771 -1.1690 0.0981 6 6 4.2234 -2.1815 0.7973 7 6 5.6019 -2.1875 0.8971 8 6 6.3460 -1.1887 0.3025 9 6 5.7063 -0.1669 -0.4012 10 6 6.5009 0.9047 -1.0388 11 8 5.9418 1.7933 -1.6515 12 7 7.8450 0.8966 -0.9402 13 6 8.6322 1.9581 -1.5724 14 6 10.0976 1.7182 -1.3147 15 1 10.4110 0.8604 -0.7381 16 6 11.0380 2.5930 -1.8160 17 7 10.6562 3.6371 -2.5185 18 14 12.8544 2.2952 -1.4971 19 1 13.4170 1.4566 -2.5859 20 1 13.5692 3.5960 -1.4545 21 1 13.0207 1.5960 -0.1976 22 6 4.3150 -0.1610 -0.5021 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6984 -2.0059 -0.0669 27 1 3.6466 -2.9655 1.2650 28 1 6.0987 -2.9771 1.4414 29 1 7.4230 -1.1972 0.3823 30 1 8.2912 0.1879 -0.4508 31 1 8.4471 1.9574 -2.6465 32 1 8.3434 2.9226 -1.1546 33 1 11.3179 4.2528 -2.8708 34 1 3.8148 0.6243 -1.0494 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244173257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:04 Heat of formation + Delta-G solvation = -79.329799 kcal Electronic energy + Delta-G solvation = -18548.863131 eV Core-core repulsion = 15445.227977 eV Total energy + Delta-G solvation = -3103.635153 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69861 -40.68501 -39.02957 -36.29254 -35.89066 -34.43144 -32.21558 -31.89896 -29.75266 -29.01481 -25.68662 -24.00557 -23.83916 -21.67945 -21.42225 -19.80601 -18.30615 -17.99187 -17.39506 -17.15742 -16.93432 -16.47784 -16.22154 -16.14013 -15.33712 -15.11108 -14.63071 -14.51672 -14.23594 -14.08241 -13.68633 -13.37096 -13.07034 -12.95026 -12.83556 -12.72473 -12.64038 -12.23392 -11.54414 -11.52713 -10.98642 -10.93820 -10.83773 -10.12156 -9.82819 -9.25099 -8.31152 -6.49209 -0.18671 0.27594 1.42352 1.46035 1.49734 1.57370 1.89562 2.06181 2.29020 2.49726 2.86657 3.03724 3.71503 3.81936 3.95978 4.12568 4.21258 4.39280 4.50694 4.53839 4.64239 4.85772 5.03659 5.07974 5.16082 5.23329 5.29722 5.37448 5.40547 5.41202 5.63921 5.79019 5.94372 6.42716 6.59786 6.78845 7.15378 7.18298 7.35558 8.81619 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036765 B = 0.003855 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.410271 B = 7261.046588 C = 7947.062895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.494 3.506 3 O -0.586 6.586 4 N -0.656 5.656 5 C 0.123 3.877 6 C -0.100 4.100 7 C -0.094 4.094 8 C -0.100 4.100 9 C -0.135 4.135 10 C 0.532 3.468 11 O -0.605 6.605 12 N -0.696 5.696 13 C 0.265 3.735 14 C -0.557 4.557 15 H 0.088 0.912 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.991 3.009 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.252 1.252 22 C -0.096 4.096 23 H 0.120 0.880 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.435 0.565 27 H 0.180 0.820 28 H 0.180 0.820 29 H 0.144 0.856 30 H 0.409 0.591 31 H -0.011 1.011 32 H -0.014 1.014 33 H 0.270 0.730 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.476 -20.162 10.046 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.285 3.715 3 O -0.465 6.465 4 N -0.305 5.305 5 C 0.029 3.971 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.139 4.139 10 C 0.321 3.679 11 O -0.488 6.488 12 N -0.345 5.345 13 C 0.142 3.858 14 C -0.595 4.595 15 H 0.106 0.894 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.813 3.187 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.176 1.176 22 C -0.117 4.117 23 H 0.138 0.862 24 H 0.124 0.876 25 H 0.119 0.881 26 H 0.276 0.724 27 H 0.197 0.803 28 H 0.197 0.803 29 H 0.162 0.838 30 H 0.247 0.753 31 H 0.007 0.993 32 H 0.004 0.996 33 H 0.078 0.922 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.438 -18.632 9.526 27.239 hybrid contribution 0.851 0.455 -0.413 1.050 sum -16.587 -18.177 9.113 26.241 Atomic orbital electron populations 1.21884 0.86115 1.07327 1.06176 1.22171 0.93091 0.82546 0.73729 1.90835 1.71902 1.33748 1.49974 1.43560 1.03789 1.10800 1.72344 1.17782 0.84071 0.96814 0.98468 1.21566 0.95364 0.98458 0.96643 1.21408 0.93272 0.98237 0.98331 1.21626 1.01373 0.93042 0.95926 1.19798 0.93718 0.96987 1.03376 1.19130 0.82957 0.85723 0.80130 1.90696 1.72156 1.40284 1.45697 1.46086 1.05354 1.29083 1.54006 1.18630 0.90659 0.85260 0.91238 1.21595 0.90077 1.11946 1.35863 0.89404 1.26161 1.05650 0.94052 0.93927 1.70161 1.36674 1.14591 1.35670 0.85066 0.76380 0.77714 0.79492 1.19370 1.20950 1.17599 1.21193 0.92586 0.99310 0.98622 0.86155 0.87566 0.88127 0.72387 0.80256 0.80291 0.83821 0.75329 0.99349 0.99601 0.92156 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 10.39 71.24 0.74 -0.74 16 2 C 0.49 10.91 7.78 87.66 0.68 11.60 16 3 O -0.59 -21.56 14.54 -3.07 -0.04 -21.61 16 4 N -0.66 -11.01 5.34 -303.60 -1.62 -12.63 16 5 C 0.12 2.96 6.29 38.11 0.24 3.20 16 6 C -0.10 -1.55 9.96 22.44 0.22 -1.33 16 7 C -0.09 -1.57 10.02 22.21 0.22 -1.35 16 8 C -0.10 -2.60 9.54 22.54 0.21 -2.38 16 9 C -0.14 -5.04 5.87 -20.10 -0.12 -5.16 16 10 C 0.53 26.07 7.77 86.79 0.67 26.74 16 11 O -0.60 -36.07 16.35 -3.89 -0.06 -36.13 16 12 N -0.70 -33.23 5.50 -469.70 -2.58 -35.81 16 13 C 0.26 15.67 5.43 85.63 0.46 16.13 16 14 C -0.56 -31.55 9.28 25.60 0.24 -31.31 16 15 H 0.09 4.43 7.60 -2.91 -0.02 4.41 16 16 C 0.00 0.09 5.46 84.66 0.46 0.55 16 17 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 18 Si 0.99 43.16 29.54 68.60 2.03 45.19 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 22 C -0.10 -3.48 8.23 22.66 0.19 -3.30 16 23 H 0.12 0.08 7.92 -2.39 -0.02 0.07 16 24 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.44 2.54 8.66 -92.71 -0.80 1.74 16 27 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 28 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 29 H 0.14 3.23 6.40 -2.91 -0.02 3.21 16 30 H 0.41 15.89 6.35 -92.71 -0.59 15.30 16 31 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 32 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.11 4.81 5.82 -2.91 -0.02 4.79 16 Total: -1.00 -92.93 301.63 1.99 -90.94 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -0.24 Total: 15.33 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 4.23 Total: 12.67 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.92 Total: -106.39 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.11 Total: -57.74 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -92.93 1.99 -90.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244173257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.611 kcal (2) G-P(sol) polarization free energy of solvation -92.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds