Wall clock time and date at job start Mon Mar 30 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.47847 * 111.00103 * 180.84011 * 12 2 1 14 14 C 1.54900 * 104.79899 * 213.63812 * 13 12 2 15 15 C 1.55147 * 101.65343 * 37.07428 * 14 13 12 16 16 H 1.09006 * 110.70410 * 82.72691 * 15 14 13 17 17 N 1.46498 * 110.70605 * 205.96239 * 15 14 13 18 18 S 1.65598 * 119.99884 * 258.59668 * 17 15 14 19 19 C 1.81401 * 104.44893 * 65.00261 * 18 17 15 20 20 O 1.42101 * 104.27990 * 181.07398 * 18 17 15 21 21 O 1.42096 * 104.27740 * 308.93015 * 18 17 15 22 22 C 1.47451 * 110.99834 * 60.00400 * 12 2 1 23 23 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 24 24 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.09003 * 110.37714 * 332.47623 * 13 12 2 28 28 H 1.09003 * 110.37002 * 94.81319 * 13 12 2 29 29 H 1.08995 * 110.99437 * 278.98509 * 14 13 12 30 30 H 1.09006 * 111.02205 * 155.17840 * 14 13 12 31 31 H 0.97003 * 119.99991 * 78.59947 * 17 15 14 32 32 H 1.09000 * 109.47384 * 60.00118 * 19 18 17 33 33 H 1.09004 * 109.46972 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.47017 * 299.99629 * 19 18 17 35 35 H 1.08992 * 109.88722 * 242.66178 * 22 12 2 36 36 H 1.09000 * 109.88322 * 3.85010 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0196 -0.6926 -1.1993 13 6 3.4974 -0.7299 -1.2234 14 6 3.8712 -0.6372 -2.7237 15 6 2.7948 0.3459 -3.2547 16 1 3.0898 1.3784 -3.0672 17 7 2.5518 0.1262 -4.6825 18 16 3.2273 1.1412 -5.8031 19 6 5.0137 0.8726 -5.6384 20 8 2.7615 0.6456 -7.0508 21 8 2.8752 2.4427 -5.3544 22 6 1.5469 -0.0241 -2.4256 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7164 1.1670 3.4843 27 1 3.9075 0.1194 -0.6769 28 1 3.8603 -1.6661 -0.7991 29 1 3.7848 -1.6096 -3.2085 30 1 4.8726 -0.2265 -2.8526 31 1 1.9952 -0.6138 -4.9716 32 1 5.2446 -0.1725 -5.8446 33 1 5.5436 1.5082 -6.3479 34 1 5.3264 1.1206 -4.6241 35 1 0.9107 -0.7012 -2.9953 36 1 0.9933 0.8782 -2.1660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247067240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:18 Heat of formation + Delta-G solvation = -91.386139 kcal Electronic energy + Delta-G solvation = -18571.966945 eV Core-core repulsion = 15603.252941 eV Total energy + Delta-G solvation = -2968.714004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13993 -38.12119 -36.99494 -36.43191 -34.50909 -32.28367 -30.30387 -29.41273 -28.60066 -26.90451 -23.32912 -21.96110 -21.00883 -20.49352 -18.83215 -18.26611 -17.57760 -17.16747 -16.95449 -16.17312 -15.92801 -15.21487 -14.76755 -14.42056 -14.31014 -13.99194 -13.90423 -13.46255 -13.38621 -13.18948 -13.16189 -13.06336 -12.92052 -12.63021 -12.56768 -12.35110 -12.16338 -11.93143 -11.87591 -11.72080 -11.53168 -10.92386 -10.51046 -10.31529 -8.89973 -8.09431 -6.21379 -0.62584 1.43513 1.45240 1.55489 1.77170 2.44198 2.92276 3.19229 3.30171 3.40621 3.70254 3.83502 4.08376 4.10668 4.22111 4.40564 4.57362 4.64675 4.81024 4.83960 4.93303 5.01980 5.06897 5.09405 5.16175 5.27943 5.44364 5.50408 5.74712 5.79487 6.14126 6.26611 6.41411 6.70398 6.93865 7.48350 8.96642 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.044177 B = 0.004579 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.665906 B = 6113.711498 C = 6364.175604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.034 1.034 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.532 5.532 13 C 0.052 3.948 14 C -0.134 4.134 15 C 0.133 3.867 16 H 0.095 0.905 17 N -1.101 6.101 18 S 2.620 3.380 19 C -0.650 4.650 20 O -0.997 6.997 21 O -1.007 7.007 22 C 0.036 3.964 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.058 0.942 26 H 0.261 0.739 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.425 0.575 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.084 0.916 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.543 -2.313 -14.999 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H -0.017 1.017 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.257 5.257 13 C -0.076 4.076 14 C -0.174 4.174 15 C 0.024 3.976 16 H 0.113 0.887 17 N -0.859 5.859 18 S 2.717 3.283 19 C -0.804 4.804 20 O -0.988 6.988 21 O -0.997 6.997 22 C -0.094 4.094 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.261 0.739 32 H 0.174 0.826 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.102 0.898 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.860 -1.963 -15.374 17.852 hybrid contribution 0.355 0.154 1.395 1.448 sum 9.215 -1.808 -13.978 16.840 Atomic orbital electron populations 1.21684 0.97740 0.99154 0.99560 1.19237 0.92461 0.90235 0.87716 1.01659 1.21384 1.30994 1.12156 0.90818 0.92235 1.25733 0.95428 0.95744 1.02011 1.70032 1.37918 1.24296 1.24001 0.85516 0.77943 0.79101 0.78817 1.20112 1.21221 1.19224 1.63656 1.09207 1.51270 1.01594 1.22812 0.87802 1.00647 0.96333 1.23312 0.98991 1.01013 0.94063 1.21964 0.96065 0.99771 0.79849 0.88736 1.55285 1.66291 1.48377 1.15979 1.04273 0.79218 0.72768 0.72032 1.30360 1.22271 1.14313 1.13468 1.93563 1.80922 1.80864 1.43409 1.93571 1.83222 1.41126 1.81812 1.23087 0.97034 0.97609 0.91695 0.95442 0.95037 0.92348 0.93027 0.95315 0.91095 0.88287 0.87716 0.73903 0.82637 0.83446 0.83865 0.89776 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.84 71.98 0.64 -5.46 16 2 C 0.21 10.58 1.64 44.17 0.07 10.66 16 3 H -0.03 -1.91 8.10 -2.39 -0.02 -1.93 16 4 C -0.52 -27.81 8.07 25.60 0.21 -27.60 16 5 H 0.06 3.17 7.22 -2.91 -0.02 3.14 16 6 C 0.01 0.50 5.31 84.66 0.45 0.95 16 7 N -0.92 -53.08 11.33 21.45 0.24 -52.84 16 8 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.53 -21.44 5.02 -864.77 -4.34 -25.78 16 13 C 0.05 1.77 5.68 86.77 0.49 2.26 16 14 C -0.13 -2.91 6.76 31.98 0.22 -2.69 16 15 C 0.13 3.28 3.50 46.17 0.16 3.44 16 16 H 0.09 2.42 7.58 -2.38 -0.02 2.40 16 17 N -1.10 -21.15 5.47 -164.48 -0.90 -22.05 16 18 S 2.62 49.32 6.08 -56.49 -0.34 48.98 16 19 C -0.65 -5.62 10.89 113.37 1.23 -4.38 16 20 O -1.00 -24.89 18.08 -127.65 -2.31 -27.19 16 21 O -1.01 -28.69 17.45 -127.65 -2.23 -30.92 16 22 C 0.04 1.19 5.89 86.64 0.51 1.70 16 23 H 0.03 1.20 6.50 -2.39 -0.02 1.19 16 24 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 3.20 6.08 -2.39 -0.01 3.18 16 26 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 27 H 0.03 1.08 7.77 -2.39 -0.02 1.06 16 28 H 0.07 2.42 7.89 -2.39 -0.02 2.41 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 1.55 7.66 -2.38 -0.02 1.53 16 31 H 0.42 7.09 8.62 -96.74 -0.83 6.26 16 32 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.14 1.01 7.66 -2.39 -0.02 0.99 16 35 H 0.08 2.56 7.81 -2.39 -0.02 2.54 16 36 H 0.04 1.45 6.35 -2.39 -0.02 1.43 16 Total: -1.00 -73.95 300.97 -3.63 -77.57 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.24 Total: 8.25 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 3.98 Total: -21.13 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -5.00 Total: -100.67 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -4.54 Total: -58.11 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 49.32 SS G_CDS: -0.34 Total: 48.98 kcal Total: -73.95 -3.63 -77.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247067240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.812 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds