Wall clock time and date at job start Mon Mar 30 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47020 * 2 1 4 4 C 1.50697 * 109.47009 * 239.99796 * 2 1 3 5 5 H 1.07996 * 120.00172 * 239.99604 * 4 2 1 6 6 C 1.37885 * 119.99889 * 60.00362 * 4 2 1 7 7 N 1.31513 * 119.99765 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47007 * 59.99703 * 8 6 4 10 10 H 1.48501 * 109.47097 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47258 * 299.99881 * 8 6 4 12 12 N 1.46895 * 109.46985 * 119.99958 * 2 1 3 13 13 C 1.48562 * 110.99842 * 179.87722 * 12 2 1 14 14 C 1.54379 * 104.59486 * 200.96032 * 13 12 2 15 15 C 1.54266 * 105.05973 * 23.85004 * 14 13 12 16 16 H 1.09005 * 110.32054 * 118.89995 * 15 14 13 17 17 N 1.46504 * 110.32417 * 241.10452 * 15 14 13 18 18 S 1.65602 * 120.00009 * 263.55143 * 17 15 14 19 19 C 1.81394 * 104.45136 * 64.99446 * 18 17 15 20 20 O 1.42096 * 104.27800 * 181.07325 * 18 17 15 21 21 O 1.42105 * 104.27505 * 308.92657 * 18 17 15 22 22 C 1.48562 * 111.00142 * 64.45559 * 12 2 1 23 23 H 1.09001 * 109.46735 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46972 * 299.99808 * 1 2 3 25 25 H 1.08996 * 109.46839 * 60.00240 * 1 2 3 26 26 H 0.97010 * 119.99433 * 180.02562 * 7 6 4 27 27 H 1.08998 * 110.41528 * 82.17831 * 13 12 2 28 28 H 1.08997 * 110.50874 * 319.78619 * 13 12 2 29 29 H 1.08996 * 110.32596 * 264.95760 * 14 13 12 30 30 H 1.09000 * 110.41377 * 142.79352 * 14 13 12 31 31 H 0.96993 * 119.99918 * 83.54193 * 17 15 14 32 32 H 1.09007 * 109.47192 * 60.00791 * 19 18 17 33 33 H 1.09005 * 109.47052 * 180.02562 * 19 18 17 34 34 H 1.08992 * 109.47768 * 300.00266 * 19 18 17 35 35 H 1.09000 * 110.41111 * 40.26361 * 22 12 2 36 36 H 1.08989 * 110.41482 * 277.81625 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 3.5048 -0.7149 1.2322 14 6 3.8554 -1.8801 2.1823 15 6 2.6242 -2.8090 2.1486 16 1 2.9030 -3.7936 1.7731 17 7 2.0347 -2.9211 3.4851 18 16 2.4257 -4.2032 4.4577 19 6 4.1944 -3.9895 4.7990 20 8 1.6614 -3.9943 5.6372 21 8 2.2104 -5.3436 3.6376 22 6 1.6333 -2.1268 1.1811 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7083 1.1609 -3.4845 27 1 3.8906 0.2256 1.6256 28 1 3.9060 -0.9025 0.2363 29 1 4.0210 -1.5077 3.1932 30 1 4.7388 -2.4093 1.8250 31 1 1.4155 -2.2444 3.8004 32 1 4.3551 -3.0349 5.3001 33 1 4.5412 -4.7998 5.4404 34 1 4.7500 -4.0057 3.8614 35 1 1.7399 -2.5365 0.1766 36 1 0.6101 -2.2495 1.5360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247067257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:22 Heat of formation + Delta-G solvation = -63.769909 kcal Electronic energy + Delta-G solvation = -18798.397823 eV Core-core repulsion = 15830.881349 eV Total energy + Delta-G solvation = -2967.516475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.72802 -37.07230 -35.94715 -34.91863 -32.68317 -30.64012 -29.61300 -27.64370 -27.13848 -25.17753 -21.88406 -20.42661 -19.52683 -19.31718 -17.71457 -16.45717 -16.39805 -16.09935 -15.35695 -15.04507 -14.28136 -13.81969 -13.46984 -13.30292 -13.06114 -12.72010 -12.62107 -12.28918 -12.11591 -11.99521 -11.82156 -11.38877 -11.21507 -11.08384 -11.00324 -10.78433 -10.57844 -10.45751 -10.10738 -10.00015 -9.83519 -9.32991 -9.24750 -8.44377 -7.33141 -6.05518 -4.18290 0.26549 2.75553 3.24219 3.30147 3.32084 3.78169 4.15662 4.34527 4.61968 4.86869 4.88049 5.06359 5.11884 5.21492 5.50102 5.54130 5.56645 5.87940 6.07234 6.09220 6.48350 6.53511 6.69049 6.74805 6.85703 7.01520 7.11326 7.19211 7.45620 7.64095 7.86352 8.06541 8.13249 8.33953 8.90485 9.49130 10.95268 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034539 B = 0.005198 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.474151 B = 5385.716630 C = 5553.341168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.196 3.804 3 H 0.040 0.960 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.511 5.511 13 C 0.036 3.964 14 C -0.147 4.147 15 C 0.138 3.862 16 H 0.092 0.908 17 N -1.102 6.102 18 S 2.613 3.387 19 C -0.674 4.674 20 O -0.967 6.967 21 O -0.961 6.961 22 C 0.035 3.965 23 H 0.025 0.975 24 H 0.014 0.986 25 H 0.083 0.917 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.422 0.578 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 -6.609 11.489 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.058 0.942 4 C -0.586 4.586 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.235 5.235 13 C -0.093 4.093 14 C -0.187 4.187 15 C 0.030 3.970 16 H 0.110 0.890 17 N -0.862 5.862 18 S 2.704 3.296 19 C -0.824 4.824 20 O -0.957 6.957 21 O -0.951 6.951 22 C -0.095 4.095 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.257 0.743 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.731 -7.002 12.030 15.052 hybrid contribution 1.123 -0.139 -1.643 1.995 sum 6.854 -7.141 10.386 14.347 Atomic orbital electron populations 1.21755 0.97601 0.99159 1.00271 1.19378 0.92563 0.94493 0.84669 0.94240 1.21628 1.32231 1.13059 0.91661 0.92274 1.24911 0.94746 0.94784 0.98922 1.69874 1.36061 1.22625 1.23656 0.86725 0.79172 0.79921 0.82594 1.20245 1.21231 1.20338 1.65810 1.06725 1.10185 1.40775 1.22937 0.91226 0.96662 0.98435 1.22996 0.97003 0.97756 1.00957 1.21728 0.93940 0.99284 0.82031 0.89047 1.55520 1.59385 1.44875 1.26416 1.04668 0.77226 0.74013 0.73671 1.30594 1.28228 1.11569 1.12004 1.93599 1.67449 1.85552 1.49129 1.93614 1.84224 1.49429 1.67812 1.23258 0.97711 0.90531 0.98012 0.95537 0.96686 0.89838 0.92774 0.91630 0.92031 0.91066 0.91528 0.74269 0.85288 0.85822 0.85364 0.90797 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.93 37.16 0.33 -2.72 16 2 C 0.20 4.65 2.45 -68.86 -0.17 4.48 16 3 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.55 -13.85 6.50 -34.44 -0.22 -14.07 16 5 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -24.26 11.32 55.43 0.63 -23.64 16 8 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.51 -10.01 5.40 -223.41 -1.21 -11.22 16 13 C 0.04 0.62 6.28 -2.18 -0.01 0.61 16 14 C -0.15 -1.91 6.46 -25.35 -0.16 -2.07 16 15 C 0.14 1.92 3.61 -66.54 -0.24 1.67 16 16 H 0.09 1.19 7.55 -51.93 -0.39 0.80 16 17 N -1.10 -13.33 5.29 -3.71 -0.02 -13.35 16 18 S 2.61 29.27 6.09 -107.50 -0.65 28.61 16 19 C -0.67 -4.91 10.77 101.05 1.09 -3.82 16 20 O -0.97 -13.77 18.08 -57.54 -1.04 -14.81 16 21 O -0.96 -14.26 17.42 -57.54 -1.00 -15.27 16 22 C 0.03 0.62 4.94 -2.18 -0.01 0.61 16 23 H 0.03 0.59 7.06 -51.93 -0.37 0.23 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.18 6.24 -51.93 -0.32 0.86 16 29 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.42 5.02 8.80 -34.47 -0.30 4.72 16 32 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.12 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.13 0.84 7.93 -51.93 -0.41 0.43 16 35 H 0.07 1.48 5.90 -51.93 -0.31 1.18 16 36 H 0.08 1.36 7.61 -51.93 -0.40 0.96 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -31.65 297.65 -8.52 -40.17 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.20 Total: 3.19 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 0.50 Total: -13.58 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.60 Total: -48.20 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -2.04 Total: -30.08 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 29.27 SS G_CDS: -0.65 Total: 28.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.65 -8.52 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247067257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.601 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds