Wall clock time and date at job start Mon Mar 30 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47020 * 2 1 4 4 C 1.50697 * 109.47009 * 239.99796 * 2 1 3 5 5 H 1.07996 * 120.00172 * 239.99604 * 4 2 1 6 6 C 1.37885 * 119.99889 * 60.00362 * 4 2 1 7 7 N 1.31513 * 119.99765 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47007 * 59.99703 * 8 6 4 10 10 H 1.48501 * 109.47097 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47258 * 299.99881 * 8 6 4 12 12 N 1.46895 * 109.46985 * 119.99958 * 2 1 3 13 13 C 1.48562 * 110.99842 * 179.87722 * 12 2 1 14 14 C 1.54379 * 104.59486 * 200.96032 * 13 12 2 15 15 C 1.54266 * 105.05973 * 23.85004 * 14 13 12 16 16 H 1.09005 * 110.32054 * 118.89995 * 15 14 13 17 17 N 1.46504 * 110.32417 * 241.10452 * 15 14 13 18 18 S 1.65602 * 120.00009 * 263.55143 * 17 15 14 19 19 C 1.81394 * 104.45136 * 64.99446 * 18 17 15 20 20 O 1.42096 * 104.27800 * 181.07325 * 18 17 15 21 21 O 1.42105 * 104.27505 * 308.92657 * 18 17 15 22 22 C 1.48562 * 111.00142 * 64.45559 * 12 2 1 23 23 H 1.09001 * 109.46735 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46972 * 299.99808 * 1 2 3 25 25 H 1.08996 * 109.46839 * 60.00240 * 1 2 3 26 26 H 0.97010 * 119.99433 * 180.02562 * 7 6 4 27 27 H 1.08998 * 110.41528 * 82.17831 * 13 12 2 28 28 H 1.08997 * 110.50874 * 319.78619 * 13 12 2 29 29 H 1.08996 * 110.32596 * 264.95760 * 14 13 12 30 30 H 1.09000 * 110.41377 * 142.79352 * 14 13 12 31 31 H 0.96993 * 119.99918 * 83.54193 * 17 15 14 32 32 H 1.09007 * 109.47192 * 60.00791 * 19 18 17 33 33 H 1.09005 * 109.47052 * 180.02562 * 19 18 17 34 34 H 1.08992 * 109.47768 * 300.00266 * 19 18 17 35 35 H 1.09000 * 110.41111 * 40.26361 * 22 12 2 36 36 H 1.08989 * 110.41482 * 277.81625 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 3.5048 -0.7149 1.2322 14 6 3.8554 -1.8801 2.1823 15 6 2.6242 -2.8090 2.1486 16 1 2.9030 -3.7936 1.7731 17 7 2.0347 -2.9211 3.4851 18 16 2.4257 -4.2032 4.4577 19 6 4.1944 -3.9895 4.7990 20 8 1.6614 -3.9943 5.6372 21 8 2.2104 -5.3436 3.6376 22 6 1.6333 -2.1268 1.1811 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7083 1.1609 -3.4845 27 1 3.8906 0.2256 1.6256 28 1 3.9060 -0.9025 0.2363 29 1 4.0210 -1.5077 3.1932 30 1 4.7388 -2.4093 1.8250 31 1 1.4155 -2.2444 3.8004 32 1 4.3551 -3.0349 5.3001 33 1 4.5412 -4.7998 5.4404 34 1 4.7500 -4.0057 3.8614 35 1 1.7399 -2.5365 0.1766 36 1 0.6101 -2.2495 1.5360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247067257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:22 Heat of formation + Delta-G solvation = -90.298370 kcal Electronic energy + Delta-G solvation = -18799.548184 eV Core-core repulsion = 15830.881349 eV Total energy + Delta-G solvation = -2968.666835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12259 -38.07621 -36.94420 -36.40220 -34.31968 -32.20232 -30.27287 -29.04879 -28.57464 -27.18191 -23.42952 -21.62159 -21.12318 -20.36658 -18.71521 -18.26699 -17.44276 -17.11891 -16.95486 -16.08562 -15.93462 -15.30159 -14.64056 -14.27541 -14.14553 -14.00645 -13.87140 -13.61415 -13.21233 -13.11206 -13.04339 -12.99940 -12.94742 -12.70302 -12.54355 -12.04052 -11.95382 -11.89871 -11.73113 -11.62796 -11.54695 -11.17514 -10.46602 -10.31757 -9.01092 -8.03944 -6.24401 -0.57086 1.40831 1.42394 1.48691 1.85753 2.41660 2.97385 3.17529 3.35314 3.56765 3.72039 3.94131 4.12458 4.26746 4.41194 4.49446 4.65715 4.81960 4.84721 4.97118 5.01803 5.10385 5.13482 5.16842 5.28364 5.30724 5.49047 5.56128 5.70152 5.98434 6.15614 6.21139 6.36658 6.47948 6.95769 7.46048 8.93551 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034539 B = 0.005198 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.474151 B = 5385.716630 C = 5553.341168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.199 3.801 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.947 3.053 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.512 5.512 13 C 0.029 3.971 14 C -0.135 4.135 15 C 0.147 3.853 16 H 0.105 0.895 17 N -1.104 6.104 18 S 2.619 3.381 19 C -0.650 4.650 20 O -1.002 7.002 21 O -1.004 7.004 22 C 0.031 3.969 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.057 0.943 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.422 0.578 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.049 0.951 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.783 -7.810 12.763 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.091 3.909 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.774 3.226 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.235 5.235 13 C -0.099 4.099 14 C -0.175 4.175 15 C 0.039 3.961 16 H 0.123 0.877 17 N -0.863 5.863 18 S 2.716 3.284 19 C -0.804 4.804 20 O -0.993 6.993 21 O -0.994 6.994 22 C -0.099 4.099 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.257 0.743 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.067 0.933 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.963 -8.218 13.306 17.550 hybrid contribution 0.458 0.249 -1.966 2.034 sum 8.421 -7.969 11.341 16.218 Atomic orbital electron populations 1.21588 0.97753 0.98867 0.99509 1.19147 0.92468 0.93115 0.86134 0.97647 1.21906 1.31574 1.12835 0.92318 0.91988 1.25650 0.95179 0.95522 1.01740 1.70010 1.37388 1.24020 1.23987 0.85778 0.78871 0.78753 0.79243 1.19942 1.21367 1.19560 1.65704 1.08630 1.11092 1.38097 1.23018 0.89321 0.98999 0.98572 1.23002 0.97344 0.95733 1.01406 1.21566 0.93043 0.99690 0.81828 0.87738 1.55419 1.60076 1.44780 1.25990 1.04299 0.79091 0.72698 0.72350 1.30358 1.22295 1.13888 1.13832 1.93554 1.70129 1.85691 1.49918 1.93559 1.86030 1.51163 1.68688 1.23237 0.98841 0.89721 0.98094 0.95441 0.95498 0.92450 0.93021 0.91290 0.94401 0.88237 0.88475 0.74314 0.83029 0.83430 0.83500 0.93313 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.93 71.99 0.64 -5.10 16 2 C 0.20 9.69 2.45 44.17 0.11 9.79 16 3 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 4 C -0.55 -28.15 6.50 25.60 0.17 -27.98 16 5 H 0.06 3.10 5.68 -2.91 -0.02 3.08 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -51.52 11.32 21.45 0.24 -51.28 16 8 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.51 -19.95 5.40 -860.74 -4.65 -24.60 16 13 C 0.03 0.97 6.28 86.45 0.54 1.52 16 14 C -0.14 -2.99 6.46 31.49 0.20 -2.79 16 15 C 0.15 3.73 3.61 45.89 0.17 3.90 16 16 H 0.10 2.43 7.55 -2.38 -0.02 2.41 16 17 N -1.10 -24.34 5.29 -165.65 -0.88 -25.22 16 18 S 2.62 52.60 6.09 -56.49 -0.34 52.25 16 19 C -0.65 -6.04 10.77 113.37 1.22 -4.81 16 20 O -1.00 -27.18 18.08 -127.65 -2.31 -29.48 16 21 O -1.00 -28.39 17.42 -127.65 -2.22 -30.62 16 22 C 0.03 1.10 4.94 86.45 0.43 1.53 16 23 H 0.03 1.26 7.06 -2.39 -0.02 1.25 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 26 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.04 1.43 6.24 -2.39 -0.01 1.42 16 29 H 0.10 1.69 7.95 -2.39 -0.02 1.67 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.42 9.42 8.80 -96.75 -0.85 8.57 16 32 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.15 1.00 7.93 -2.39 -0.02 0.98 16 35 H 0.05 1.97 5.90 -2.39 -0.01 1.95 16 36 H 0.07 2.50 7.61 -2.39 -0.02 2.48 16 Total: -1.00 -70.42 297.65 -3.97 -74.40 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.23 Total: 12.83 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 3.93 Total: -22.50 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -5.28 Total: -101.10 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -4.53 Total: -60.10 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 52.60 SS G_CDS: -0.34 Total: 52.25 kcal Total: -70.42 -3.97 -74.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247067257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.903 kcal (2) G-P(sol) polarization free energy of solvation -70.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds