Wall clock time and date at job start Mon Mar 30 2020 04:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46769 * 2 1 4 4 H 1.09004 * 109.52446 * 305.08010 * 3 2 1 5 5 C 1.53186 * 109.50045 * 65.16178 * 3 2 1 6 6 N 1.46919 * 108.77954 * 174.58254 * 5 3 2 7 7 S 1.65602 * 120.62914 * 126.41267 * 6 5 3 8 8 O 1.42105 * 106.40207 * 203.54381 * 7 6 5 9 9 O 1.42097 * 106.40465 * 336.45976 * 7 6 5 10 10 C 1.76201 * 107.21874 * 90.00414 * 7 6 5 11 11 H 1.07996 * 119.99651 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99937 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99833 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99806 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47184 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47124 * 120.00017 * 14 12 10 17 17 H 1.48501 * 109.46538 * 239.99843 * 14 12 10 18 18 C 1.46927 * 118.74179 * 306.39646 * 6 5 3 19 19 C 1.53193 * 108.77663 * 53.60344 * 18 6 5 20 20 C 1.53046 * 109.31028 * 305.36644 * 19 18 6 21 21 H 1.09000 * 109.45696 * 181.38288 * 20 19 18 22 22 N 1.46892 * 109.46146 * 301.34612 * 20 19 18 23 23 H 1.08997 * 109.47507 * 300.00013 * 1 2 3 24 24 H 1.09000 * 109.47136 * 60.00439 * 1 2 3 25 25 H 1.09008 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47507 * 239.99987 * 2 1 3 27 27 H 1.09000 * 109.47136 * 119.99561 * 2 1 3 28 28 H 1.09002 * 109.58478 * 294.37788 * 5 3 2 29 29 H 1.09006 * 109.58741 * 54.79739 * 5 3 2 30 30 H 0.97000 * 119.99991 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.58699 * 173.39102 * 18 6 5 32 32 H 1.08998 * 109.58257 * 293.82054 * 18 6 5 33 33 H 1.09001 * 109.49998 * 185.42005 * 19 18 6 34 34 H 1.08998 * 109.50010 * 65.31705 * 19 18 6 35 35 H 1.00903 * 110.99979 * 300.06589 * 22 20 19 36 36 H 1.00900 * 111.00503 * 64.01894 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 -0.8407 5 6 1.6385 2.1268 1.3104 6 7 2.2450 3.4644 1.3507 7 16 1.3119 4.8062 1.6178 8 8 2.0234 5.9059 1.0667 9 8 -0.0095 4.4606 1.2260 10 6 1.2620 5.0684 3.3595 11 1 1.7898 4.3983 4.0218 12 6 0.5490 6.1292 3.8768 13 7 -0.0933 6.9455 3.0702 14 14 0.4966 6.4075 5.7232 15 1 1.2956 5.3577 6.4049 16 1 1.0625 7.7438 6.0386 17 1 -0.9103 6.3421 6.1938 18 6 3.6951 3.5889 1.1498 19 6 4.0736 2.8883 -0.1589 20 6 3.5652 1.4451 -0.1257 21 1 3.8546 0.9370 -1.0456 22 7 4.1523 0.7458 1.0249 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5532 2.2161 1.3585 29 1 1.9964 1.5378 2.1549 30 1 -0.5952 7.6915 3.4341 31 1 3.9668 4.6429 1.0918 32 1 4.2208 3.1191 1.9810 33 1 5.1577 2.8895 -0.2720 34 1 3.6192 3.4149 -0.9981 35 1 5.1595 0.7338 0.9654 36 1 3.8463 1.1583 1.8935 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251610614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:08 Heat of formation + Delta-G solvation = -106.083328 kcal Electronic energy + Delta-G solvation = -19318.499397 eV Core-core repulsion = 16349.148075 eV Total energy + Delta-G solvation = -2969.351322 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.16519 -35.33963 -34.03463 -33.95556 -33.36368 -33.00637 -29.57907 -28.25061 -26.12474 -24.12306 -23.61849 -20.89675 -19.11602 -18.68709 -17.27768 -16.52492 -15.91921 -15.23907 -14.98526 -14.54644 -14.27178 -13.89909 -13.75736 -13.57673 -13.25097 -12.85353 -12.40698 -12.04934 -11.85798 -11.56748 -11.29977 -11.25082 -11.22943 -11.02221 -10.71216 -10.59760 -10.44030 -10.30611 -10.29341 -10.02727 -9.81530 -9.27022 -8.91605 -8.56537 -8.15208 -6.70765 -5.32993 2.25123 3.04176 3.12507 3.19760 4.04427 4.49553 4.62633 4.70793 4.88228 5.06564 5.16391 5.28562 5.46233 5.56312 5.60853 5.69084 5.77952 5.87399 5.94732 6.00739 6.11106 6.17838 6.18898 6.21622 6.26139 6.40454 6.45862 6.56784 6.68830 6.82588 7.26595 7.31420 7.54948 7.58363 7.96923 8.88146 10.22681 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026790 B = 0.007129 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.910824 B = 3926.817290 C = 4143.515336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.105 4.105 3 C -0.095 4.095 4 H 0.075 0.925 5 C 0.125 3.875 6 N -1.012 6.012 7 S 2.715 3.285 8 O -1.005 7.005 9 O -1.003 7.003 10 C -1.021 5.021 11 H 0.102 0.898 12 C 0.132 3.868 13 N -0.846 5.846 14 Si 0.920 3.080 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.122 3.878 19 C -0.169 4.169 20 C 0.099 3.901 21 H 0.076 0.924 22 N -0.843 5.843 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.290 0.710 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.335 0.665 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.514 -10.943 -3.051 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.143 4.143 3 C -0.116 4.116 4 H 0.093 0.907 5 C -0.001 4.001 6 N -0.847 5.847 7 S 2.816 3.184 8 O -0.996 6.996 9 O -0.993 6.993 10 C -1.154 5.154 11 H 0.120 0.880 12 C -0.086 4.086 13 N -0.476 5.476 14 Si 0.743 3.257 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.004 4.004 19 C -0.210 4.210 20 C -0.012 4.012 21 H 0.094 0.906 22 N -0.374 5.374 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.581 -10.918 -4.042 12.911 hybrid contribution 0.610 1.053 1.744 2.127 sum 6.191 -9.865 -2.298 11.872 Atomic orbital electron populations 1.21896 0.96289 1.01065 1.02483 1.21382 0.95014 0.95517 1.02367 1.21574 0.94324 0.96513 0.99168 0.90679 1.21354 0.99326 0.83143 0.96296 1.58194 1.16526 1.21470 1.88496 1.00495 0.71436 0.69960 0.76479 1.93343 1.74288 1.50776 1.81160 1.93345 1.37542 1.83199 1.85243 1.30669 1.44004 1.22019 1.18708 0.87984 1.24763 0.90269 0.92375 1.01154 1.69904 1.26380 1.14117 1.37187 0.86145 0.78847 0.78953 0.81707 1.18604 1.19597 1.19560 1.21182 0.81516 1.02052 0.95689 1.22698 1.00557 0.98185 0.99538 1.21367 0.94450 0.91265 0.94160 0.90586 1.59025 1.12996 1.59951 1.05382 0.92083 0.92866 0.93188 0.92494 0.90929 0.88690 0.92182 0.89940 0.88818 0.92914 0.91497 0.91047 0.85327 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.67 37.16 0.36 -1.65 16 2 C -0.10 -1.30 5.19 -26.73 -0.14 -1.44 16 3 C -0.10 -1.37 2.16 -90.50 -0.20 -1.57 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.12 2.15 4.93 -3.72 -0.02 2.13 16 6 N -1.01 -20.18 3.29 -113.53 -0.37 -20.55 16 7 S 2.71 71.97 5.01 -107.50 -0.54 71.43 16 8 O -1.01 -29.22 16.61 -57.17 -0.95 -30.17 16 9 O -1.00 -29.11 16.61 -57.17 -0.95 -30.06 16 10 C -1.02 -28.16 9.75 30.60 0.30 -27.87 16 11 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 12 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 13 N -0.85 -24.99 13.19 55.43 0.73 -24.26 16 14 Si 0.92 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 18 C 0.12 2.04 6.04 -3.71 -0.02 2.02 16 19 C -0.17 -2.30 5.77 -26.61 -0.15 -2.46 16 20 C 0.10 1.25 3.12 -67.67 -0.21 1.04 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 N -0.84 -9.51 8.48 -4.63 -0.04 -9.55 16 23 H 0.06 0.83 6.70 -51.93 -0.35 0.48 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.90 7.80 -51.93 -0.40 0.50 16 28 H 0.09 1.80 5.64 -51.93 -0.29 1.51 16 29 H 0.06 0.93 6.83 -51.93 -0.35 0.57 16 30 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.09 1.72 6.92 -51.93 -0.36 1.36 16 32 H 0.05 0.76 7.02 -51.93 -0.36 0.39 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.33 3.16 9.04 -39.29 -0.36 2.80 16 36 H 0.34 4.16 5.60 -39.29 -0.22 3.94 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -33.55 294.78 -8.08 -41.63 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.20 Total: 7.68 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -0.18 Total: -26.18 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.32 Total: -54.37 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -1.90 Total: -60.23 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 71.97 SS G_CDS: -0.54 Total: 71.43 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.55 -8.08 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251610614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.452 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds