Wall clock time and date at job start Mon Mar 30 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46769 * 2 1 4 4 H 1.09004 * 109.52446 * 305.08010 * 3 2 1 5 5 C 1.53186 * 109.50045 * 65.16178 * 3 2 1 6 6 N 1.46919 * 108.77954 * 174.58254 * 5 3 2 7 7 S 1.65602 * 120.62914 * 126.41267 * 6 5 3 8 8 O 1.42105 * 106.40207 * 203.54381 * 7 6 5 9 9 O 1.42097 * 106.40465 * 336.45976 * 7 6 5 10 10 C 1.76201 * 107.21874 * 90.00414 * 7 6 5 11 11 H 1.07996 * 119.99651 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99937 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99833 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99806 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47184 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47124 * 120.00017 * 14 12 10 17 17 H 1.48501 * 109.46538 * 239.99843 * 14 12 10 18 18 C 1.46927 * 118.74179 * 306.39646 * 6 5 3 19 19 C 1.53193 * 108.77663 * 53.60344 * 18 6 5 20 20 C 1.53046 * 109.31028 * 305.36644 * 19 18 6 21 21 H 1.09000 * 109.45696 * 181.38288 * 20 19 18 22 22 N 1.46892 * 109.46146 * 301.34612 * 20 19 18 23 23 H 1.08997 * 109.47507 * 300.00013 * 1 2 3 24 24 H 1.09000 * 109.47136 * 60.00439 * 1 2 3 25 25 H 1.09008 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47507 * 239.99987 * 2 1 3 27 27 H 1.09000 * 109.47136 * 119.99561 * 2 1 3 28 28 H 1.09002 * 109.58478 * 294.37788 * 5 3 2 29 29 H 1.09006 * 109.58741 * 54.79739 * 5 3 2 30 30 H 0.97000 * 119.99991 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.58699 * 173.39102 * 18 6 5 32 32 H 1.08998 * 109.58257 * 293.82054 * 18 6 5 33 33 H 1.09001 * 109.49998 * 185.42005 * 19 18 6 34 34 H 1.08998 * 109.50010 * 65.31705 * 19 18 6 35 35 H 1.00903 * 110.99979 * 300.06589 * 22 20 19 36 36 H 1.00900 * 111.00503 * 64.01894 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 -0.8407 5 6 1.6385 2.1268 1.3104 6 7 2.2450 3.4644 1.3507 7 16 1.3119 4.8062 1.6178 8 8 2.0234 5.9059 1.0667 9 8 -0.0095 4.4606 1.2260 10 6 1.2620 5.0684 3.3595 11 1 1.7898 4.3983 4.0218 12 6 0.5490 6.1292 3.8768 13 7 -0.0933 6.9455 3.0702 14 14 0.4966 6.4075 5.7232 15 1 1.2956 5.3577 6.4049 16 1 1.0625 7.7438 6.0386 17 1 -0.9103 6.3421 6.1938 18 6 3.6951 3.5889 1.1498 19 6 4.0736 2.8883 -0.1589 20 6 3.5652 1.4451 -0.1257 21 1 3.8546 0.9370 -1.0456 22 7 4.1523 0.7458 1.0249 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5532 2.2161 1.3585 29 1 1.9964 1.5378 2.1549 30 1 -0.5952 7.6915 3.4341 31 1 3.9668 4.6429 1.0918 32 1 4.2208 3.1191 1.9810 33 1 5.1577 2.8895 -0.2720 34 1 3.6192 3.4149 -0.9981 35 1 5.1595 0.7338 0.9654 36 1 3.8463 1.1583 1.8935 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251610614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:07 Heat of formation + Delta-G solvation = -133.418562 kcal Electronic energy + Delta-G solvation = -19319.684742 eV Core-core repulsion = 16349.148075 eV Total energy + Delta-G solvation = -2970.536667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37143 -37.50953 -36.16751 -35.39306 -35.10402 -34.45122 -30.75620 -29.35272 -28.27231 -25.40147 -24.88424 -22.02339 -20.83228 -20.27895 -18.91139 -18.43013 -17.32319 -16.91454 -16.67142 -16.06848 -15.58210 -15.41819 -15.21795 -14.90395 -14.51610 -14.14468 -13.99865 -13.60889 -13.33087 -13.12353 -13.05449 -12.72994 -12.60580 -12.53326 -12.43184 -12.33221 -12.30702 -11.94869 -11.51858 -11.36146 -11.29586 -11.14187 -10.96870 -9.76390 -9.44729 -8.77024 -7.51827 0.27983 1.30564 1.31333 1.49364 2.18075 2.54440 2.79425 3.68902 3.70086 3.78035 3.92114 4.03532 4.17435 4.24653 4.32974 4.42248 4.47067 4.55156 4.66373 4.75354 4.81919 4.91550 5.05102 5.08902 5.17000 5.20764 5.21864 5.25886 5.40511 5.48911 5.61772 5.87595 5.98667 6.33242 6.73073 6.75064 8.17971 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026790 B = 0.007129 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.910824 B = 3926.817290 C = 4143.515336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.095 4.095 3 C -0.095 4.095 4 H 0.057 0.943 5 C 0.120 3.880 6 N -1.007 6.007 7 S 2.717 3.283 8 O -1.043 7.043 9 O -1.041 7.041 10 C -1.041 5.041 11 H 0.119 0.881 12 C 0.068 3.932 13 N -0.896 5.896 14 Si 0.991 3.009 15 H -0.246 1.246 16 H -0.258 1.258 17 H -0.259 1.259 18 C 0.112 3.888 19 C -0.164 4.164 20 C 0.108 3.892 21 H 0.097 0.903 22 N -0.837 5.837 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.299 0.701 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.350 0.650 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.209 -12.976 -1.936 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.133 4.133 3 C -0.116 4.116 4 H 0.075 0.925 5 C -0.005 4.005 6 N -0.845 5.845 7 S 2.819 3.181 8 O -1.033 7.033 9 O -1.031 7.031 10 C -1.175 5.175 11 H 0.137 0.863 12 C -0.145 4.145 13 N -0.527 5.527 14 Si 0.808 3.192 15 H -0.169 1.169 16 H -0.182 1.182 17 H -0.183 1.183 18 C -0.013 4.013 19 C -0.205 4.205 20 C -0.004 4.004 21 H 0.115 0.885 22 N -0.369 5.369 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.164 0.836 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.292 -12.961 -2.950 15.162 hybrid contribution 0.119 1.627 1.338 2.110 sum 7.411 -11.335 -1.612 13.638 Atomic orbital electron populations 1.21920 0.96822 1.01994 1.01256 1.21327 0.94500 0.93992 1.03489 1.21585 0.96125 0.97272 0.96595 0.92453 1.21582 0.97922 0.81951 0.99093 1.57667 1.17648 1.20767 1.88429 1.00020 0.71055 0.70592 0.76390 1.93281 1.74794 1.53473 1.81730 1.93284 1.40133 1.84012 1.85704 1.31038 1.44251 1.22626 1.19558 0.86322 1.26065 0.89419 0.91829 1.07160 1.69999 1.27624 1.15190 1.39930 0.85100 0.79772 0.79781 0.74511 1.16864 1.18243 1.18291 1.21494 0.79410 1.01620 0.98789 1.22721 1.02540 0.98428 0.96854 1.21295 0.92766 0.90681 0.95633 0.88477 1.58991 1.14174 1.59159 1.04530 0.93881 0.93624 0.91145 0.90659 0.90289 0.91264 0.89880 0.89107 0.91138 0.89909 0.88162 0.92721 0.83630 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 9.67 71.98 0.70 -3.23 16 2 C -0.09 -2.14 5.19 30.60 0.16 -1.98 16 3 C -0.10 -2.61 2.16 -10.71 -0.02 -2.64 16 4 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 5 C 0.12 4.08 4.93 86.36 0.43 4.51 16 6 N -1.01 -40.43 3.29 -513.09 -1.69 -42.12 16 7 S 2.72 149.22 5.01 -56.49 -0.28 148.94 16 8 O -1.04 -63.27 16.61 -128.00 -2.13 -65.39 16 9 O -1.04 -63.41 16.61 -128.00 -2.13 -65.53 16 10 C -1.04 -58.19 9.75 67.73 0.66 -57.53 16 11 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 12 C 0.07 3.82 5.46 84.66 0.46 4.28 16 13 N -0.90 -54.35 13.19 21.45 0.28 -54.07 16 14 Si 0.99 41.60 29.54 68.60 2.03 43.63 16 15 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 16 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 18 C 0.11 3.64 6.04 86.36 0.52 4.16 16 19 C -0.16 -4.14 5.77 30.67 0.18 -3.97 16 20 C 0.11 2.40 3.12 44.95 0.14 2.54 16 21 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 22 N -0.84 -15.68 8.48 -168.56 -1.43 -17.11 16 23 H 0.04 1.18 6.70 -2.39 -0.02 1.16 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 28 H 0.07 2.72 5.64 -2.39 -0.01 2.71 16 29 H 0.08 2.43 6.83 -2.38 -0.02 2.42 16 30 H 0.30 16.20 8.31 -92.71 -0.77 15.43 16 31 H 0.07 2.62 6.92 -2.39 -0.02 2.60 16 32 H 0.08 2.18 7.02 -2.39 -0.02 2.16 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.35 5.03 9.04 -89.69 -0.81 4.22 16 36 H 0.34 7.03 5.60 -89.69 -0.50 6.52 16 Total: -1.00 -75.29 294.78 -2.34 -77.63 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.22 Total: 27.89 kcal Atomic # 6 Polarization: -57.07 SS G_CDS: 3.22 Total: -53.86 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -2.83 Total: -113.30 kcal Atomic # 8 Polarization: -126.67 SS G_CDS: -4.25 Total: -130.92 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 149.22 SS G_CDS: -0.28 Total: 148.94 kcal Total: -75.29 -2.34 -77.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251610614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.791 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds