Wall clock time and date at job start Mon Mar 30 2020 04:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46926 * 2 1 4 4 H 1.08994 * 109.52572 * 54.92321 * 3 2 1 5 5 C 1.53159 * 109.48014 * 294.84477 * 3 2 1 6 6 N 1.46928 * 108.76987 * 185.40798 * 5 3 2 7 7 S 1.65592 * 120.63204 * 233.58747 * 6 5 3 8 8 O 1.42106 * 106.40353 * 23.56318 * 7 6 5 9 9 O 1.42101 * 106.40514 * 156.47913 * 7 6 5 10 10 C 1.76196 * 107.22079 * 270.02114 * 7 6 5 11 11 H 1.08006 * 120.00165 * 359.97438 * 10 7 6 12 12 C 1.37881 * 120.00541 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99574 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00514 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47355 * 59.99789 * 14 12 10 16 16 H 1.48493 * 109.47357 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46907 * 300.00274 * 14 12 10 18 18 C 1.46931 * 118.73792 * 53.61250 * 6 5 3 19 19 C 1.53200 * 108.77279 * 306.39072 * 18 6 5 20 20 C 1.53039 * 109.31160 * 54.63574 * 19 18 6 21 21 H 1.09002 * 109.46050 * 58.65698 * 20 19 18 22 22 N 1.46895 * 109.45925 * 178.62921 * 20 19 18 23 23 H 1.08996 * 109.47121 * 59.99540 * 1 2 3 24 24 H 1.08993 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46675 * 299.99722 * 1 2 3 26 26 H 1.08995 * 109.46885 * 239.99789 * 2 1 3 27 27 H 1.08999 * 109.46849 * 120.00012 * 2 1 3 28 28 H 1.08999 * 109.58991 * 65.62090 * 5 3 2 29 29 H 1.09002 * 109.70860 * 305.26095 * 5 3 2 30 30 H 0.97000 * 120.00160 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.58425 * 186.61021 * 18 6 5 32 32 H 1.08999 * 109.58795 * 66.17471 * 18 6 5 33 33 H 1.08997 * 109.49280 * 294.68615 * 19 18 6 34 34 H 1.08996 * 109.52417 * 174.60413 * 19 18 6 35 35 H 1.00898 * 111.00085 * 300.02763 * 22 20 19 36 36 H 1.00906 * 111.00486 * 63.97963 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6382 2.1262 -1.3103 6 7 2.2445 3.4640 -1.3507 7 16 1.3113 4.8055 -1.6179 8 8 -0.0100 4.4599 -1.2254 9 8 2.0229 5.9055 -1.0674 10 6 1.2606 5.0672 -3.3596 11 1 1.7889 4.3974 -4.0220 12 6 0.5465 6.1271 -3.8771 13 7 -0.0964 6.9431 -3.0705 14 14 0.4921 6.4041 -5.7236 15 1 -0.1014 5.2146 -6.3853 16 1 -0.3356 7.6007 -6.0204 17 1 1.8706 6.6176 -6.2329 18 6 3.6947 3.5887 -1.1501 19 6 4.0735 2.8882 0.1586 20 6 3.5653 1.4450 0.1257 21 1 4.0009 0.9260 -0.7281 22 7 3.9552 0.7605 1.3655 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5530 2.2153 -1.3582 29 1 1.9943 1.5380 -2.1561 30 1 -0.5991 7.6885 -3.4345 31 1 3.9663 4.6427 -1.0922 32 1 4.2204 3.1188 -1.9814 33 1 3.6190 3.4149 0.9978 34 1 5.1575 2.8897 0.2721 35 1 4.9586 0.7483 1.4717 36 1 3.5120 1.1837 2.1671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251610617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:11 Heat of formation + Delta-G solvation = -108.641295 kcal Electronic energy + Delta-G solvation = -19152.565218 eV Core-core repulsion = 16183.102974 eV Total energy + Delta-G solvation = -2969.462244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.89993 -35.32192 -34.22323 -33.94350 -33.61180 -33.04581 -29.51924 -28.26800 -26.10510 -24.08943 -22.81278 -20.98706 -19.87039 -18.74236 -17.34739 -16.32220 -15.78419 -15.28814 -15.09725 -14.41909 -14.24963 -13.80243 -13.65458 -13.57123 -13.20124 -13.00441 -12.32025 -11.99850 -11.86936 -11.70552 -11.39611 -11.20378 -11.19853 -10.95280 -10.70927 -10.61993 -10.40245 -10.29361 -10.27952 -10.08586 -9.82005 -9.23657 -8.92938 -8.64190 -8.14435 -6.69130 -5.31519 2.27027 3.08358 3.12651 3.18393 4.05660 4.47236 4.64107 4.64853 4.83569 5.02344 5.22580 5.31682 5.50165 5.57232 5.64248 5.71142 5.82002 5.85150 5.95497 6.06175 6.12533 6.15071 6.18376 6.22741 6.32725 6.38788 6.47820 6.58122 6.68553 6.85221 7.15509 7.32881 7.44940 7.60798 7.97733 8.89328 10.24337 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.006783 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.387938 B = 4127.019116 C = 4452.423706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.071 0.929 5 C 0.127 3.873 6 N -1.012 6.012 7 S 2.715 3.285 8 O -1.003 7.003 9 O -1.005 7.005 10 C -1.021 5.021 11 H 0.101 0.899 12 C 0.133 3.867 13 N -0.847 5.847 14 Si 0.920 3.080 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.264 1.264 18 C 0.127 3.873 19 C -0.166 4.166 20 C 0.097 3.903 21 H 0.080 0.920 22 N -0.843 5.843 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.291 0.709 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.336 0.664 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -10.962 4.031 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.146 4.146 3 C -0.114 4.114 4 H 0.089 0.911 5 C 0.001 3.999 6 N -0.847 5.847 7 S 2.817 3.183 8 O -0.994 6.994 9 O -0.996 6.996 10 C -1.155 5.155 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.476 5.476 14 Si 0.744 3.256 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.189 1.189 18 C 0.000 4.000 19 C -0.207 4.207 20 C -0.014 4.014 21 H 0.098 0.902 22 N -0.370 5.370 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.615 -10.948 4.446 13.082 hybrid contribution 0.583 1.044 -1.318 1.779 sum 6.198 -9.904 3.129 12.095 Atomic orbital electron populations 1.21883 0.96264 1.01046 1.02456 1.21416 0.95118 0.95536 1.02481 1.21550 0.94213 0.96548 0.99049 0.91071 1.21348 0.99327 0.83313 0.95952 1.58178 1.16672 1.21362 1.88496 1.00466 0.71431 0.69967 0.76458 1.93346 1.37571 1.83221 1.85223 1.93341 1.74292 1.50782 1.81170 1.30623 1.44023 1.22113 1.18716 0.88059 1.24756 0.90274 0.92358 1.01132 1.69889 1.26279 1.14143 1.37331 0.86211 0.79158 0.78464 0.81793 1.18836 1.20094 1.18879 1.21135 0.81390 1.01809 0.95667 1.22745 1.00402 0.97862 0.99650 1.21430 0.95600 0.91500 0.92908 0.90193 1.58995 1.13182 1.60066 1.04803 0.92182 0.93199 0.92810 0.92405 0.90726 0.88601 0.92396 0.89846 0.88980 0.92405 0.91692 0.91566 0.85159 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.34 5.31 -26.73 -0.14 -1.48 16 3 C -0.09 -1.34 1.99 -90.52 -0.18 -1.52 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.13 2.21 5.37 -3.73 -0.02 2.19 16 6 N -1.01 -20.48 3.29 -113.53 -0.37 -20.85 16 7 S 2.72 72.36 5.01 -107.50 -0.54 71.82 16 8 O -1.00 -29.17 16.61 -57.17 -0.95 -30.12 16 9 O -1.01 -29.30 16.61 -57.17 -0.95 -30.25 16 10 C -1.02 -28.34 9.75 30.60 0.30 -28.04 16 11 H 0.10 2.58 7.81 -52.48 -0.41 2.17 16 12 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 13 N -0.85 -25.08 13.19 55.43 0.73 -24.35 16 14 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 15 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.13 2.16 6.48 -3.70 -0.02 2.14 16 19 C -0.17 -2.26 5.65 -26.61 -0.15 -2.41 16 20 C 0.10 1.22 2.67 -67.67 -0.18 1.04 16 21 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 22 N -0.84 -8.74 8.34 -4.63 -0.04 -8.78 16 23 H 0.06 0.81 6.70 -51.93 -0.35 0.47 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.90 7.41 -51.93 -0.38 0.51 16 28 H 0.10 1.82 5.64 -51.93 -0.29 1.53 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.29 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.09 1.70 6.92 -51.93 -0.36 1.34 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.34 2.91 9.04 -39.29 -0.36 2.56 16 36 H 0.34 3.37 8.98 -39.29 -0.35 3.02 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -33.71 300.34 -8.19 -41.91 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.44 Total: 6.52 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -0.14 Total: -26.10 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.32 Total: -53.98 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.90 Total: -60.37 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 72.36 SS G_CDS: -0.54 Total: 71.82 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.71 -8.19 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251610617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.734 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds