Wall clock time and date at job start Mon Mar 30 2020 04:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46926 * 2 1 4 4 H 1.08994 * 109.52572 * 54.92321 * 3 2 1 5 5 C 1.53159 * 109.48014 * 294.84477 * 3 2 1 6 6 N 1.46928 * 108.76987 * 185.40798 * 5 3 2 7 7 S 1.65592 * 120.63204 * 233.58747 * 6 5 3 8 8 O 1.42106 * 106.40353 * 23.56318 * 7 6 5 9 9 O 1.42101 * 106.40514 * 156.47913 * 7 6 5 10 10 C 1.76196 * 107.22079 * 270.02114 * 7 6 5 11 11 H 1.08006 * 120.00165 * 359.97438 * 10 7 6 12 12 C 1.37881 * 120.00541 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99574 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00514 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47355 * 59.99789 * 14 12 10 16 16 H 1.48493 * 109.47357 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46907 * 300.00274 * 14 12 10 18 18 C 1.46931 * 118.73792 * 53.61250 * 6 5 3 19 19 C 1.53200 * 108.77279 * 306.39072 * 18 6 5 20 20 C 1.53039 * 109.31160 * 54.63574 * 19 18 6 21 21 H 1.09002 * 109.46050 * 58.65698 * 20 19 18 22 22 N 1.46895 * 109.45925 * 178.62921 * 20 19 18 23 23 H 1.08996 * 109.47121 * 59.99540 * 1 2 3 24 24 H 1.08993 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46675 * 299.99722 * 1 2 3 26 26 H 1.08995 * 109.46885 * 239.99789 * 2 1 3 27 27 H 1.08999 * 109.46849 * 120.00012 * 2 1 3 28 28 H 1.08999 * 109.58991 * 65.62090 * 5 3 2 29 29 H 1.09002 * 109.70860 * 305.26095 * 5 3 2 30 30 H 0.97000 * 120.00160 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.58425 * 186.61021 * 18 6 5 32 32 H 1.08999 * 109.58795 * 66.17471 * 18 6 5 33 33 H 1.08997 * 109.49280 * 294.68615 * 19 18 6 34 34 H 1.08996 * 109.52417 * 174.60413 * 19 18 6 35 35 H 1.00898 * 111.00085 * 300.02763 * 22 20 19 36 36 H 1.00906 * 111.00486 * 63.97963 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6382 2.1262 -1.3103 6 7 2.2445 3.4640 -1.3507 7 16 1.3113 4.8055 -1.6179 8 8 -0.0100 4.4599 -1.2254 9 8 2.0229 5.9055 -1.0674 10 6 1.2606 5.0672 -3.3596 11 1 1.7889 4.3974 -4.0220 12 6 0.5465 6.1271 -3.8771 13 7 -0.0964 6.9431 -3.0705 14 14 0.4921 6.4041 -5.7236 15 1 -0.1014 5.2146 -6.3853 16 1 -0.3356 7.6007 -6.0204 17 1 1.8706 6.6176 -6.2329 18 6 3.6947 3.5887 -1.1501 19 6 4.0735 2.8882 0.1586 20 6 3.5653 1.4450 0.1257 21 1 4.0009 0.9260 -0.7281 22 7 3.9552 0.7605 1.3655 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5530 2.2153 -1.3582 29 1 1.9943 1.5380 -2.1561 30 1 -0.5991 7.6885 -3.4345 31 1 3.9663 4.6427 -1.0922 32 1 4.2204 3.1188 -1.9814 33 1 3.6190 3.4149 0.9978 34 1 5.1575 2.8897 0.2721 35 1 4.9586 0.7483 1.4717 36 1 3.5120 1.1837 2.1671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251610617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:11 Heat of formation + Delta-G solvation = -136.234065 kcal Electronic energy + Delta-G solvation = -19153.761730 eV Core-core repulsion = 16183.102974 eV Total energy + Delta-G solvation = -2970.658756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11055 -37.49844 -36.15881 -35.57410 -35.12772 -34.67023 -30.72576 -29.42109 -28.25923 -25.30874 -24.10446 -22.12687 -21.04537 -20.77253 -19.10230 -18.35474 -17.10863 -16.93427 -16.58243 -15.99085 -15.73399 -15.39187 -15.05664 -14.78358 -14.55724 -14.17387 -13.97275 -13.53488 -13.37088 -13.14340 -13.01760 -13.00931 -12.56032 -12.50186 -12.42186 -12.34131 -12.17289 -11.97205 -11.49735 -11.46515 -11.25850 -11.11192 -10.98244 -9.86578 -9.43083 -8.76026 -7.51080 0.29151 1.31689 1.34058 1.47244 2.18784 2.55452 2.80655 3.60510 3.68272 3.80059 3.87945 4.07794 4.16765 4.29566 4.35298 4.44078 4.50085 4.56575 4.73533 4.78721 4.83621 4.89653 4.96108 5.05863 5.12526 5.21605 5.26456 5.30144 5.39466 5.52582 5.60455 5.87858 6.00416 6.28290 6.69830 6.75596 8.18594 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.006783 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.387938 B = 4127.019116 C = 4452.423706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.091 4.091 4 H 0.051 0.949 5 C 0.120 3.880 6 N -1.008 6.008 7 S 2.717 3.283 8 O -1.041 7.041 9 O -1.042 7.042 10 C -1.043 5.043 11 H 0.118 0.882 12 C 0.068 3.932 13 N -0.896 5.896 14 Si 0.990 3.010 15 H -0.249 1.249 16 H -0.263 1.263 17 H -0.249 1.249 18 C 0.116 3.884 19 C -0.160 4.160 20 C 0.107 3.893 21 H 0.093 0.907 22 N -0.836 5.836 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.299 0.701 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.351 0.649 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -12.974 2.919 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.136 4.136 3 C -0.111 4.111 4 H 0.069 0.931 5 C -0.006 4.006 6 N -0.846 5.846 7 S 2.820 3.180 8 O -1.031 7.031 9 O -1.033 7.033 10 C -1.176 5.176 11 H 0.136 0.864 12 C -0.144 4.144 13 N -0.527 5.527 14 Si 0.808 3.192 15 H -0.173 1.173 16 H -0.187 1.187 17 H -0.173 1.173 18 C -0.010 4.010 19 C -0.201 4.201 20 C -0.005 4.005 21 H 0.111 0.889 22 N -0.365 5.365 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.165 0.835 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.275 -12.969 3.363 15.245 hybrid contribution 0.106 1.611 -0.898 1.847 sum 7.381 -11.358 2.465 13.768 Atomic orbital electron populations 1.21906 0.96779 1.01978 1.01228 1.21362 0.94615 0.94025 1.03573 1.21518 0.95973 0.97235 0.96399 0.93052 1.21606 0.98036 0.82132 0.98819 1.57672 1.17785 1.20731 1.88439 1.00006 0.71065 0.70600 0.76377 1.93285 1.40110 1.84019 1.85676 1.93279 1.74792 1.53455 1.81735 1.31003 1.44291 1.22747 1.19592 0.86351 1.26060 0.89405 0.91793 1.07160 1.69990 1.27516 1.15185 1.40050 0.85169 0.80208 0.79325 0.74538 1.17312 1.18693 1.17290 1.21460 0.79307 1.01441 0.98797 1.22756 1.02358 0.98077 0.96878 1.21292 0.93859 0.90886 0.94485 0.88902 1.58945 1.14371 1.59191 1.04000 0.93821 0.91151 0.93726 0.91102 0.89615 0.91047 0.89884 0.89096 0.91215 0.89537 0.93355 0.88262 0.83548 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.67 71.98 0.70 -3.22 16 2 C -0.10 -2.21 5.31 30.60 0.16 -2.05 16 3 C -0.09 -2.50 1.99 -10.73 -0.02 -2.52 16 4 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 5 C 0.12 4.11 5.37 86.35 0.46 4.57 16 6 N -1.01 -40.99 3.29 -513.10 -1.69 -42.68 16 7 S 2.72 149.87 5.01 -56.49 -0.28 149.59 16 8 O -1.04 -63.43 16.61 -128.00 -2.13 -65.55 16 9 O -1.04 -63.39 16.61 -128.00 -2.13 -65.51 16 10 C -1.04 -58.56 9.75 67.74 0.66 -57.90 16 11 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 12 C 0.07 3.87 5.46 84.66 0.46 4.33 16 13 N -0.90 -54.48 13.19 21.45 0.28 -54.20 16 14 Si 0.99 41.68 29.54 68.60 2.03 43.71 16 15 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 18 C 0.12 3.82 6.48 86.36 0.56 4.38 16 19 C -0.16 -4.04 5.65 30.67 0.17 -3.87 16 20 C 0.11 2.38 2.67 44.94 0.12 2.50 16 21 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 22 N -0.84 -14.62 8.34 -168.57 -1.41 -16.03 16 23 H 0.04 1.19 6.70 -2.39 -0.02 1.17 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.80 7.41 -2.39 -0.02 1.78 16 28 H 0.07 2.80 5.64 -2.39 -0.01 2.79 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 30 H 0.30 16.33 8.31 -92.71 -0.77 15.55 16 31 H 0.07 2.61 6.92 -2.39 -0.02 2.59 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.35 4.71 9.04 -89.70 -0.81 3.90 16 36 H 0.34 5.94 8.98 -89.69 -0.81 5.14 16 Total: -1.00 -75.54 300.34 -2.57 -78.11 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.53 Total: 26.34 kcal Atomic # 6 Polarization: -57.05 SS G_CDS: 3.28 Total: -53.77 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -2.81 Total: -112.91 kcal Atomic # 8 Polarization: -126.82 SS G_CDS: -4.25 Total: -131.07 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 149.87 SS G_CDS: -0.28 Total: 149.59 kcal Total: -75.54 -2.57 -78.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251610617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.124 kcal (2) G-P(sol) polarization free energy of solvation -75.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds