Wall clock time and date at job start Mon Mar 30 2020 05:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.91560 * 2 1 4 4 C 1.54906 * 111.00511 * 123.90150 * 2 1 3 5 5 N 1.47426 * 104.83199 * 81.06926 * 4 2 1 6 6 S 1.65598 * 125.64731 * 204.09743 * 5 4 2 7 7 O 1.42097 * 106.40468 * 23.57750 * 6 5 4 8 8 O 1.42098 * 106.40289 * 156.49930 * 6 5 4 9 9 C 1.76199 * 107.21489 * 270.03620 * 6 5 4 10 10 H 1.08005 * 120.00459 * 0.02562 * 9 6 5 11 11 C 1.37889 * 120.00045 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00042 * 180.02562 * 11 9 6 13 13 Si 1.86800 * 119.99615 * 0.02562 * 11 9 6 14 14 H 1.48501 * 109.47148 * 89.99796 * 13 11 9 15 15 H 1.48506 * 109.46767 * 209.99545 * 13 11 9 16 16 H 1.48500 * 109.47173 * 329.99633 * 13 11 9 17 17 C 1.47020 * 108.70246 * 24.12763 * 5 4 2 18 18 C 1.54323 * 107.27322 * 358.94194 * 17 5 4 19 19 H 1.09006 * 110.72100 * 96.16763 * 18 17 5 20 20 N 1.46900 * 110.72263 * 219.44353 * 18 17 5 21 21 C 1.46905 * 110.99895 * 182.56651 * 20 18 17 22 22 C 1.46900 * 110.99701 * 306.52071 * 20 18 17 23 23 H 1.08996 * 109.46741 * 187.35981 * 1 2 3 24 24 H 1.09002 * 109.47449 * 307.36691 * 1 2 3 25 25 H 1.09007 * 109.47054 * 67.36580 * 1 2 3 26 26 H 1.08996 * 110.36744 * 322.22631 * 4 2 1 27 27 H 1.09000 * 110.45938 * 199.95298 * 4 2 1 28 28 H 0.96998 * 119.99963 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.88065 * 239.52539 * 17 5 4 30 30 H 1.08997 * 110.00936 * 118.43080 * 17 5 4 31 31 H 1.08996 * 109.46761 * 60.00340 * 21 20 18 32 32 H 1.09004 * 109.46836 * 179.97438 * 21 20 18 33 33 H 1.08995 * 109.47231 * 299.99734 * 21 20 18 34 34 H 1.08996 * 109.46870 * 66.24699 * 22 20 18 35 35 H 1.08996 * 109.46501 * 186.24465 * 22 20 18 36 36 H 1.08994 * 109.47061 * 306.23927 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0140 -2.2159 0.7733 6 16 1.9318 -3.5269 1.7816 7 8 1.3974 -3.0549 3.0108 8 8 1.3393 -4.5760 1.0284 9 6 3.5865 -4.0298 2.1189 10 1 4.4144 -3.4912 1.6819 11 6 3.8245 -5.1103 2.9418 12 7 5.0595 -5.4854 3.1939 13 14 2.3926 -6.0414 3.6982 14 1 1.9810 -7.1406 2.7885 15 1 2.8076 -6.6102 5.0058 16 1 1.2511 -5.1136 3.9019 17 6 2.0286 -2.2646 -0.6961 18 6 2.0862 -0.8078 -1.2023 19 1 3.1134 -0.5158 -1.4209 20 7 1.2320 -0.6343 -2.3848 21 6 1.3293 0.7349 -2.9081 22 6 1.5636 -1.6195 -3.4228 23 1 -0.3633 -1.0192 0.1316 24 1 -0.3634 0.6237 0.8168 25 1 -0.3633 0.3955 -0.9486 26 1 1.4672 -0.6461 2.0836 27 1 3.1179 -0.5238 1.4043 28 1 5.2269 -6.2457 3.7725 29 1 1.1220 -2.7479 -1.0600 30 1 2.9051 -2.8122 -1.0424 31 1 2.3615 0.9440 -3.1889 32 1 0.6875 0.8357 -3.7834 33 1 1.0113 1.4406 -2.1408 34 1 1.3113 -2.6191 -3.0688 35 1 0.9955 -1.4000 -4.3267 36 1 2.6300 -1.5704 -3.6429 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251647624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:27 Heat of formation + Delta-G solvation = -65.173696 kcal Electronic energy + Delta-G solvation = -19178.618393 eV Core-core repulsion = 16211.041046 eV Total energy + Delta-G solvation = -2967.577347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.34098 -35.75974 -35.58819 -34.40681 -33.01404 -31.60806 -28.72713 -27.31491 -26.37238 -26.11058 -23.60865 -21.21090 -19.30979 -18.72545 -17.54651 -16.77807 -16.15369 -15.42271 -14.93071 -14.81555 -14.35149 -14.25709 -13.45448 -13.18569 -13.01022 -12.78922 -12.53286 -12.41934 -12.20299 -12.09364 -11.93230 -11.50611 -11.37949 -11.12540 -10.82009 -10.73505 -10.65423 -10.56390 -10.39079 -10.33965 -9.81471 -9.19767 -9.10723 -8.36654 -8.16294 -6.79300 -5.32450 2.00040 3.07817 3.18630 3.27792 3.85725 3.96470 4.29827 4.53495 4.64409 4.85533 5.10637 5.18079 5.29470 5.43475 5.45471 5.46607 5.55250 5.65027 5.69757 5.77886 5.89104 5.90992 6.00531 6.09553 6.18073 6.23033 6.28403 6.32193 6.62112 6.72026 7.00671 7.07357 7.26725 7.50260 8.23247 8.71806 10.33266 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036298 B = 0.006619 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.211747 B = 4229.156324 C = 4408.386663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.124 3.876 5 N -1.009 6.009 6 S 2.692 3.308 7 O -1.003 7.003 8 O -1.006 7.006 9 C -1.016 5.016 10 H 0.120 0.880 11 C 0.152 3.848 12 N -0.824 5.824 13 Si 0.801 3.199 14 H -0.246 1.246 15 H -0.254 1.254 16 H -0.219 1.219 17 C 0.133 3.867 18 C 0.074 3.926 19 H 0.057 0.943 20 N -0.534 5.534 21 C 0.024 3.976 22 C 0.018 3.982 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.280 0.720 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 11.182 -10.042 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.002 4.002 5 N -0.845 5.845 6 S 2.796 3.204 7 O -0.994 6.994 8 O -0.996 6.996 9 C -1.151 5.151 10 H 0.138 0.862 11 C -0.067 4.067 12 N -0.454 5.454 13 Si 0.620 3.380 14 H -0.170 1.170 15 H -0.178 1.178 16 H -0.141 1.141 17 C 0.007 3.993 18 C -0.036 4.036 19 H 0.075 0.925 20 N -0.258 5.258 21 C -0.124 4.124 22 C -0.130 4.130 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.493 10.537 -9.453 15.574 hybrid contribution 1.361 -0.372 0.037 1.411 sum -5.132 10.165 -9.416 14.776 Atomic orbital electron populations 1.21586 0.93540 1.02339 1.01316 1.22357 0.97340 0.97998 0.93592 0.90143 1.21951 1.00550 0.80523 0.97204 1.58533 1.91492 1.19182 1.15312 1.00951 0.76924 0.70866 0.71664 1.93452 1.81475 1.81007 1.43433 1.93398 1.79745 1.54067 1.72434 1.30572 1.16231 1.25759 1.42498 0.86205 1.24440 0.96215 0.94089 0.91933 1.69989 1.19673 1.24240 1.31448 0.87880 0.84166 0.84357 0.81547 1.16963 1.17823 1.14134 1.21535 1.01845 0.95396 0.80559 1.22786 0.94362 0.96033 0.90380 0.92513 1.62037 1.53709 1.03853 1.06171 1.22405 0.99628 0.90063 1.00323 1.22468 0.98923 0.97073 0.94578 0.92342 0.93404 0.91477 0.89992 0.91959 0.90920 0.90699 0.91987 0.95827 0.91535 0.91089 0.90578 0.91541 0.95472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.74 37.15 0.32 -1.38 16 2 C -0.09 -1.22 2.78 -88.47 -0.25 -1.47 16 3 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 4 C 0.12 2.08 6.56 -2.53 -0.02 2.06 16 5 N -1.01 -20.47 3.65 -111.43 -0.41 -20.87 16 6 S 2.69 69.33 4.43 -107.50 -0.48 68.85 16 7 O -1.00 -27.38 15.34 -57.17 -0.88 -28.26 16 8 O -1.01 -27.50 16.42 -57.17 -0.94 -28.44 16 9 C -1.02 -29.01 10.29 30.60 0.31 -28.70 16 10 H 0.12 3.46 8.06 -52.48 -0.42 3.04 16 11 C 0.15 4.46 5.47 -17.82 -0.10 4.37 16 12 N -0.82 -24.16 13.96 55.43 0.77 -23.39 16 13 Si 0.80 20.90 26.54 -169.99 -4.51 16.39 16 14 H -0.25 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.22 -5.82 5.61 56.52 0.32 -5.51 16 17 C 0.13 2.30 5.33 -3.07 -0.02 2.28 16 18 C 0.07 1.01 2.42 -65.88 -0.16 0.85 16 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 20 N -0.53 -6.30 3.69 -240.96 -0.89 -7.18 16 21 C 0.02 0.22 8.93 60.07 0.54 0.76 16 22 C 0.02 0.19 9.12 60.06 0.55 0.74 16 23 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.79 6.14 -51.92 -0.32 0.47 16 26 H 0.08 1.39 7.69 -51.93 -0.40 0.99 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.07 1.31 7.12 -51.93 -0.37 0.94 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.53 8.05 -51.93 -0.42 0.12 16 33 H 0.07 0.62 6.65 -51.93 -0.35 0.28 16 34 H 0.08 0.89 6.73 -51.93 -0.35 0.54 16 35 H 0.07 0.60 8.01 -51.93 -0.42 0.18 16 36 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -32.77 295.10 -7.32 -40.09 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.63 Total: -1.14 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 1.19 Total: -20.49 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.52 Total: -51.44 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -1.82 Total: -56.70 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.51 Total: 16.39 kcal Atomic # 16 Polarization: 69.33 SS G_CDS: -0.48 Total: 68.85 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.77 -7.32 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251647624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.084 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds