Wall clock time and date at job start Mon Mar 30 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.91560 * 2 1 4 4 C 1.54906 * 111.00511 * 123.90150 * 2 1 3 5 5 N 1.47426 * 104.83199 * 81.06926 * 4 2 1 6 6 S 1.65598 * 125.64731 * 204.09743 * 5 4 2 7 7 O 1.42097 * 106.40468 * 23.57750 * 6 5 4 8 8 O 1.42098 * 106.40289 * 156.49930 * 6 5 4 9 9 C 1.76199 * 107.21489 * 270.03620 * 6 5 4 10 10 H 1.08005 * 120.00459 * 0.02562 * 9 6 5 11 11 C 1.37889 * 120.00045 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00042 * 180.02562 * 11 9 6 13 13 Si 1.86800 * 119.99615 * 0.02562 * 11 9 6 14 14 H 1.48501 * 109.47148 * 89.99796 * 13 11 9 15 15 H 1.48506 * 109.46767 * 209.99545 * 13 11 9 16 16 H 1.48500 * 109.47173 * 329.99633 * 13 11 9 17 17 C 1.47020 * 108.70246 * 24.12763 * 5 4 2 18 18 C 1.54323 * 107.27322 * 358.94194 * 17 5 4 19 19 H 1.09006 * 110.72100 * 96.16763 * 18 17 5 20 20 N 1.46900 * 110.72263 * 219.44353 * 18 17 5 21 21 C 1.46905 * 110.99895 * 182.56651 * 20 18 17 22 22 C 1.46900 * 110.99701 * 306.52071 * 20 18 17 23 23 H 1.08996 * 109.46741 * 187.35981 * 1 2 3 24 24 H 1.09002 * 109.47449 * 307.36691 * 1 2 3 25 25 H 1.09007 * 109.47054 * 67.36580 * 1 2 3 26 26 H 1.08996 * 110.36744 * 322.22631 * 4 2 1 27 27 H 1.09000 * 110.45938 * 199.95298 * 4 2 1 28 28 H 0.96998 * 119.99963 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.88065 * 239.52539 * 17 5 4 30 30 H 1.08997 * 110.00936 * 118.43080 * 17 5 4 31 31 H 1.08996 * 109.46761 * 60.00340 * 21 20 18 32 32 H 1.09004 * 109.46836 * 179.97438 * 21 20 18 33 33 H 1.08995 * 109.47231 * 299.99734 * 21 20 18 34 34 H 1.08996 * 109.46870 * 66.24699 * 22 20 18 35 35 H 1.08996 * 109.46501 * 186.24465 * 22 20 18 36 36 H 1.08994 * 109.47061 * 306.23927 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0140 -2.2159 0.7733 6 16 1.9318 -3.5269 1.7816 7 8 1.3974 -3.0549 3.0108 8 8 1.3393 -4.5760 1.0284 9 6 3.5865 -4.0298 2.1189 10 1 4.4144 -3.4912 1.6819 11 6 3.8245 -5.1103 2.9418 12 7 5.0595 -5.4854 3.1939 13 14 2.3926 -6.0414 3.6982 14 1 1.9810 -7.1406 2.7885 15 1 2.8076 -6.6102 5.0058 16 1 1.2511 -5.1136 3.9019 17 6 2.0286 -2.2646 -0.6961 18 6 2.0862 -0.8078 -1.2023 19 1 3.1134 -0.5158 -1.4209 20 7 1.2320 -0.6343 -2.3848 21 6 1.3293 0.7349 -2.9081 22 6 1.5636 -1.6195 -3.4228 23 1 -0.3633 -1.0192 0.1316 24 1 -0.3634 0.6237 0.8168 25 1 -0.3633 0.3955 -0.9486 26 1 1.4672 -0.6461 2.0836 27 1 3.1179 -0.5238 1.4043 28 1 5.2269 -6.2457 3.7725 29 1 1.1220 -2.7479 -1.0600 30 1 2.9051 -2.8122 -1.0424 31 1 2.3615 0.9440 -3.1889 32 1 0.6875 0.8357 -3.7834 33 1 1.0113 1.4406 -2.1408 34 1 1.3113 -2.6191 -3.0688 35 1 0.9955 -1.4000 -4.3267 36 1 2.6300 -1.5704 -3.6429 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251647624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:26 Heat of formation + Delta-G solvation = -90.943257 kcal Electronic energy + Delta-G solvation = -19179.735845 eV Core-core repulsion = 16211.041046 eV Total energy + Delta-G solvation = -2968.694799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49638 -37.74877 -36.81506 -36.54001 -35.22538 -32.85474 -29.89459 -28.58984 -28.16824 -27.31711 -24.66351 -22.46382 -20.74191 -20.39443 -19.42631 -18.74462 -17.51872 -17.08626 -16.40841 -16.01747 -15.89312 -15.53663 -15.25300 -15.00490 -14.63488 -14.13056 -13.81826 -13.59518 -13.48382 -13.39840 -13.16809 -13.02968 -12.94146 -12.75748 -12.61666 -12.45857 -12.25923 -11.86915 -11.77446 -11.60780 -11.44286 -11.37182 -11.23460 -9.79508 -9.23354 -9.00660 -7.56873 0.02950 1.01387 1.10998 1.18262 1.85931 2.36713 2.42438 3.01720 3.34571 3.41385 3.59362 4.10112 4.14802 4.29257 4.36185 4.42536 4.55357 4.57983 4.66548 4.74849 4.78595 4.81344 4.92493 5.02484 5.08978 5.11797 5.14256 5.21094 5.31030 5.39617 5.57296 5.70877 5.96850 6.10831 6.18352 6.48959 8.17401 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036298 B = 0.006619 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.211747 B = 4229.156324 C = 4408.386663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 H 0.118 0.882 4 C 0.109 3.891 5 N -1.011 6.011 6 S 2.713 3.287 7 O -1.022 7.022 8 O -1.027 7.027 9 C -1.040 5.040 10 H 0.103 0.897 11 C 0.108 3.892 12 N -0.853 5.853 13 Si 0.824 3.176 14 H -0.238 1.238 15 H -0.215 1.215 16 H -0.229 1.229 17 C 0.124 3.876 18 C 0.085 3.915 19 H 0.068 0.932 20 N -0.543 5.543 21 C 0.024 3.976 22 C 0.016 3.984 23 H 0.027 0.973 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.292 0.708 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.041 12.810 -10.920 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.101 4.101 3 H 0.136 0.864 4 C -0.016 4.016 5 N -0.851 5.851 6 S 2.815 3.185 7 O -1.012 7.012 8 O -1.017 7.017 9 C -1.172 5.172 10 H 0.121 0.879 11 C -0.109 4.109 12 N -0.483 5.483 13 Si 0.640 3.360 14 H -0.162 1.162 15 H -0.137 1.137 16 H -0.152 1.152 17 C -0.002 4.002 18 C -0.025 4.025 19 H 0.086 0.914 20 N -0.268 5.268 21 C -0.124 4.124 22 C -0.132 4.132 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.177 12.151 -10.318 17.482 hybrid contribution 1.610 -0.799 0.218 1.810 sum -5.567 11.352 -10.100 16.182 Atomic orbital electron populations 1.21585 0.93348 1.00832 1.02782 1.22381 0.97399 0.99034 0.91277 0.86412 1.22334 1.01510 0.78900 0.98857 1.58129 1.91089 1.19506 1.16348 1.00066 0.75459 0.71357 0.71615 1.93415 1.81233 1.81528 1.45047 1.93358 1.79558 1.56024 1.72774 1.31071 1.17802 1.25890 1.42440 0.87926 1.25186 0.98250 0.94973 0.92504 1.70007 1.20794 1.25218 1.32294 0.87513 0.81671 0.83658 0.83134 1.16155 1.13666 1.15197 1.21776 1.01257 0.98523 0.78658 1.22660 0.95467 0.92996 0.91408 0.91442 1.62026 1.53247 1.05519 1.05969 1.22489 1.00463 0.88334 1.01104 1.22492 0.99516 0.96154 0.95010 0.95353 0.92120 0.89788 0.90575 0.90979 0.89729 0.91419 0.92600 0.95202 0.90085 0.90216 0.92270 0.89523 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.74 71.98 0.63 -2.41 16 2 C -0.08 -1.91 2.78 -9.40 -0.03 -1.94 16 3 H 0.12 2.01 8.11 -2.38 -0.02 1.99 16 4 C 0.11 3.53 6.56 86.85 0.57 4.10 16 5 N -1.01 -41.10 3.65 -506.44 -1.85 -42.94 16 6 S 2.71 141.56 4.43 -56.49 -0.25 141.31 16 7 O -1.02 -56.23 15.34 -128.00 -1.96 -58.19 16 8 O -1.03 -56.91 16.42 -128.00 -2.10 -59.01 16 9 C -1.04 -60.69 10.29 67.74 0.70 -59.99 16 10 H 0.10 6.15 8.06 -2.91 -0.02 6.12 16 11 C 0.11 6.36 5.47 84.66 0.46 6.82 16 12 N -0.85 -50.39 13.96 21.45 0.30 -50.10 16 13 Si 0.82 42.04 26.54 68.60 1.82 43.86 16 14 H -0.24 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.21 -9.55 7.11 99.48 0.71 -8.84 16 16 H -0.23 -12.06 5.61 99.48 0.56 -11.51 16 17 C 0.12 4.24 5.33 86.73 0.46 4.70 16 18 C 0.08 2.12 2.42 46.10 0.11 2.23 16 19 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 20 N -0.54 -11.38 3.69 -916.25 -3.38 -14.76 16 21 C 0.02 0.35 8.93 127.69 1.14 1.49 16 22 C 0.02 0.32 9.12 127.69 1.17 1.48 16 23 H 0.03 0.83 7.92 -2.39 -0.02 0.81 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.70 6.14 -2.38 -0.01 1.69 16 26 H 0.08 2.53 7.69 -2.39 -0.02 2.52 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.29 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.07 2.40 7.12 -2.39 -0.02 2.38 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.98 8.05 -2.39 -0.02 0.96 16 33 H 0.08 1.04 6.65 -2.39 -0.02 1.02 16 34 H 0.06 1.35 6.73 -2.39 -0.02 1.33 16 35 H 0.09 1.34 8.01 -2.39 -0.02 1.32 16 36 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 Total: -1.00 -70.80 295.10 -1.31 -72.11 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.90 Total: 11.23 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 5.21 Total: -43.51 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.93 Total: -107.80 kcal Atomic # 8 Polarization: -113.14 SS G_CDS: -4.07 Total: -117.20 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.82 Total: 43.86 kcal Atomic # 16 Polarization: 141.56 SS G_CDS: -0.25 Total: 141.31 kcal Total: -70.80 -1.31 -72.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251647624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.832 kcal (2) G-P(sol) polarization free energy of solvation -70.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds