Wall clock time and date at job start Mon Mar 30 2020 05:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.88965 * 2 1 4 4 C 1.54906 * 111.00561 * 236.11557 * 2 1 3 5 5 N 1.47426 * 104.83523 * 204.91742 * 4 2 1 6 6 S 1.65596 * 125.65101 * 204.09669 * 5 4 2 7 7 O 1.42103 * 106.40207 * 336.48131 * 6 5 4 8 8 O 1.42098 * 106.40172 * 203.56147 * 6 5 4 9 9 C 1.76198 * 107.22282 * 90.01926 * 6 5 4 10 10 H 1.08002 * 119.99590 * 0.28191 * 9 6 5 11 11 C 1.37876 * 120.00225 * 179.97438 * 9 6 5 12 12 N 1.31512 * 120.00042 * 0.02562 * 11 9 6 13 13 Si 1.86807 * 119.99712 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.46971 * 90.00464 * 13 11 9 15 15 H 1.48505 * 109.46597 * 209.99857 * 13 11 9 16 16 H 1.48494 * 109.47043 * 329.99855 * 13 11 9 17 17 C 1.47020 * 108.70099 * 24.35371 * 5 4 2 18 18 C 1.54334 * 107.26506 * 358.59028 * 17 5 4 19 19 H 1.09000 * 110.51900 * 96.44930 * 18 17 5 20 20 N 1.46900 * 111.00040 * 219.59702 * 18 17 5 21 21 C 1.46909 * 111.00142 * 288.47687 * 20 18 17 22 22 C 1.46898 * 111.00077 * 52.42963 * 20 18 17 23 23 H 1.09002 * 109.47000 * 182.42996 * 1 2 3 24 24 H 1.09002 * 109.46701 * 302.42838 * 1 2 3 25 25 H 1.08994 * 109.47047 * 62.42927 * 1 2 3 26 26 H 1.09002 * 110.36254 * 86.08063 * 4 2 1 27 27 H 1.08996 * 110.37160 * 323.75992 * 4 2 1 28 28 H 0.96999 * 119.99959 * 179.97438 * 12 11 9 29 29 H 1.09008 * 109.87881 * 118.12850 * 17 5 4 30 30 H 1.08998 * 109.88558 * 239.29647 * 17 5 4 31 31 H 1.09000 * 109.46598 * 59.99717 * 21 20 18 32 32 H 1.09002 * 109.46986 * 179.97438 * 21 20 18 33 33 H 1.09000 * 109.47013 * 299.99974 * 21 20 18 34 34 H 1.08995 * 109.46867 * 52.91132 * 22 20 18 35 35 H 1.09009 * 109.47300 * 172.90829 * 22 20 18 36 36 H 1.09003 * 109.47326 * 292.90995 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4272 -1.2429 -0.7737 6 16 4.6811 -1.6338 -1.7822 7 8 4.0973 -2.0025 -3.0241 8 8 5.5391 -2.4911 -1.0418 9 6 5.5916 -0.1550 -2.0800 10 1 5.2816 0.7718 -1.6203 11 6 6.7035 -0.1823 -2.8949 12 7 7.0842 -1.3120 -3.4502 13 14 7.6691 1.3855 -3.2100 14 1 8.7322 1.5269 -2.1829 15 1 8.2886 1.3226 -4.5582 16 1 6.7542 2.5530 -3.1395 17 6 3.4658 -1.2796 0.6955 18 6 2.0862 -0.8083 1.2019 19 1 1.4468 -1.6637 1.4204 20 7 2.2251 0.0501 2.3859 21 6 2.6311 -0.7340 3.5600 22 6 3.1692 1.1468 2.1332 23 1 -0.3633 -1.0268 0.0436 24 1 -0.3633 0.5511 0.8675 25 1 -0.3633 0.4756 -0.9109 26 1 2.1561 -0.1712 -2.0836 27 1 1.4520 -1.6699 -1.4030 28 1 7.8663 -1.3311 -4.0237 29 1 3.6601 -2.2968 1.0359 30 1 4.2424 -0.6088 1.0629 31 1 3.5892 -1.2145 3.3623 32 1 2.7269 -0.0740 4.4222 33 1 1.8786 -1.4951 3.7665 34 1 2.8762 1.6768 1.2270 35 1 3.1589 1.8368 2.9771 36 1 4.1729 0.7406 2.0081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251647631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:30 Heat of formation + Delta-G solvation = -79.246322 kcal Electronic energy + Delta-G solvation = -19173.218058 eV Core-core repulsion = 16205.030476 eV Total energy + Delta-G solvation = -2968.187582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.38605 -35.49063 -35.20367 -33.96305 -33.10437 -31.96913 -28.22148 -27.59815 -26.13873 -25.68617 -23.83982 -20.98463 -19.43288 -18.76831 -17.42903 -16.58569 -16.04184 -15.11473 -14.73782 -14.59114 -14.42213 -14.10103 -13.56277 -13.42307 -13.12887 -12.50671 -12.37165 -12.13079 -12.02241 -11.87170 -11.70419 -11.34555 -11.28753 -11.22878 -11.03170 -10.69691 -10.61490 -10.31348 -10.28520 -10.21147 -10.16753 -9.26299 -8.92911 -8.25298 -8.13042 -6.70718 -5.33107 2.22573 3.05065 3.11728 3.18223 3.94982 4.05665 4.60466 4.62155 4.73932 4.96418 5.09885 5.23320 5.39789 5.48890 5.55080 5.61209 5.65833 5.73124 5.81940 5.87419 5.90907 5.99975 6.07243 6.09376 6.19122 6.23944 6.28284 6.33065 6.54461 6.84683 7.05630 7.12494 7.32299 7.47917 7.96727 8.87619 10.22860 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.007229 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.229455 B = 3872.239072 C = 4149.843587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.089 0.911 4 C 0.128 3.872 5 N -1.018 6.018 6 S 2.727 3.273 7 O -1.000 7.000 8 O -1.003 7.003 9 C -1.019 5.019 10 H 0.101 0.899 11 C 0.132 3.868 12 N -0.846 5.846 13 Si 0.920 3.080 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.262 1.262 17 C 0.092 3.908 18 C 0.076 3.924 19 H 0.094 0.906 20 N -0.531 5.531 21 C 0.019 3.981 22 C 0.009 3.991 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.291 0.709 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 4.617 9.865 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 H 0.107 0.893 4 C 0.002 3.998 5 N -0.853 5.853 6 S 2.829 3.171 7 O -0.991 6.991 8 O -0.993 6.993 9 C -1.153 5.153 10 H 0.120 0.880 11 C -0.085 4.085 12 N -0.476 5.476 13 Si 0.744 3.256 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.186 1.186 17 C -0.036 4.036 18 C -0.034 4.034 19 H 0.112 0.888 20 N -0.254 5.254 21 C -0.129 4.129 22 C -0.139 4.139 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.802 3.793 9.477 14.152 hybrid contribution 1.596 1.026 -0.262 1.916 sum -8.205 4.819 9.215 13.246 Atomic orbital electron populations 1.21630 0.93962 1.01810 1.01756 1.22507 0.95999 0.99818 0.93569 0.89311 1.21884 0.83631 0.97461 0.96831 1.59096 1.25645 1.85385 1.15206 1.00170 0.70600 0.75467 0.70886 1.93360 1.78443 1.84581 1.42702 1.93351 1.64953 1.67758 1.73260 1.30613 1.25661 1.17093 1.41910 0.88048 1.24760 0.94898 0.98012 0.90862 1.69894 1.24726 1.26495 1.26509 0.86169 0.79577 0.81536 0.78319 1.19213 1.19892 1.18624 1.22216 0.98552 1.00993 0.81833 1.22938 0.95385 0.95331 0.89768 0.88756 1.62276 1.48104 1.11208 1.03817 1.22412 0.99532 0.97840 0.93112 1.22580 0.94724 0.94208 1.02351 0.92744 0.92015 0.92600 0.90601 0.92198 0.89857 0.92135 0.91600 0.95020 0.91511 0.91425 0.90653 0.91554 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.29 37.16 0.35 -1.12 16 2 C -0.10 -1.36 3.13 -88.47 -0.28 -1.63 16 3 H 0.09 1.22 5.84 -51.93 -0.30 0.92 16 4 C 0.13 2.21 6.45 -2.53 -0.02 2.19 16 5 N -1.02 -21.30 3.70 -111.42 -0.41 -21.72 16 6 S 2.73 74.33 5.22 -107.50 -0.56 73.77 16 7 O -1.00 -29.77 17.60 -57.17 -1.01 -30.78 16 8 O -1.00 -30.00 17.60 -57.17 -1.01 -31.01 16 9 C -1.02 -28.47 9.74 30.60 0.30 -28.17 16 10 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 11 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 12 N -0.85 -25.20 13.19 55.43 0.73 -24.47 16 13 Si 0.92 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 17 C 0.09 1.63 5.69 -3.06 -0.02 1.62 16 18 C 0.08 1.05 2.47 -65.87 -0.16 0.89 16 19 H 0.09 1.21 7.99 -51.93 -0.42 0.79 16 20 N -0.53 -6.60 5.04 -240.94 -1.22 -7.82 16 21 C 0.02 0.21 9.45 60.07 0.57 0.77 16 22 C 0.01 0.11 8.88 60.06 0.53 0.65 16 23 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 28 H 0.29 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.07 1.18 5.44 -51.93 -0.28 0.90 16 31 H 0.03 0.36 7.56 -51.93 -0.39 -0.03 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.95 5.84 -51.93 -0.30 0.65 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.04 0.53 6.08 -51.93 -0.32 0.21 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -34.63 301.79 -8.12 -42.75 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.36 Total: 0.16 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 1.17 Total: -21.16 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.90 Total: -54.01 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -2.01 Total: -61.79 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 74.33 SS G_CDS: -0.56 Total: 73.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.63 -8.12 -42.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251647631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.493 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds