Wall clock time and date at job start Mon Mar 30 2020 05:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.88965 * 2 1 4 4 C 1.54906 * 111.00561 * 236.11557 * 2 1 3 5 5 N 1.47426 * 104.83523 * 204.91742 * 4 2 1 6 6 S 1.65596 * 125.65101 * 204.09669 * 5 4 2 7 7 O 1.42103 * 106.40207 * 336.48131 * 6 5 4 8 8 O 1.42098 * 106.40172 * 203.56147 * 6 5 4 9 9 C 1.76198 * 107.22282 * 90.01926 * 6 5 4 10 10 H 1.08002 * 119.99590 * 0.28191 * 9 6 5 11 11 C 1.37876 * 120.00225 * 179.97438 * 9 6 5 12 12 N 1.31512 * 120.00042 * 0.02562 * 11 9 6 13 13 Si 1.86807 * 119.99712 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.46971 * 90.00464 * 13 11 9 15 15 H 1.48505 * 109.46597 * 209.99857 * 13 11 9 16 16 H 1.48494 * 109.47043 * 329.99855 * 13 11 9 17 17 C 1.47020 * 108.70099 * 24.35371 * 5 4 2 18 18 C 1.54334 * 107.26506 * 358.59028 * 17 5 4 19 19 H 1.09000 * 110.51900 * 96.44930 * 18 17 5 20 20 N 1.46900 * 111.00040 * 219.59702 * 18 17 5 21 21 C 1.46909 * 111.00142 * 288.47687 * 20 18 17 22 22 C 1.46898 * 111.00077 * 52.42963 * 20 18 17 23 23 H 1.09002 * 109.47000 * 182.42996 * 1 2 3 24 24 H 1.09002 * 109.46701 * 302.42838 * 1 2 3 25 25 H 1.08994 * 109.47047 * 62.42927 * 1 2 3 26 26 H 1.09002 * 110.36254 * 86.08063 * 4 2 1 27 27 H 1.08996 * 110.37160 * 323.75992 * 4 2 1 28 28 H 0.96999 * 119.99959 * 179.97438 * 12 11 9 29 29 H 1.09008 * 109.87881 * 118.12850 * 17 5 4 30 30 H 1.08998 * 109.88558 * 239.29647 * 17 5 4 31 31 H 1.09000 * 109.46598 * 59.99717 * 21 20 18 32 32 H 1.09002 * 109.46986 * 179.97438 * 21 20 18 33 33 H 1.09000 * 109.47013 * 299.99974 * 21 20 18 34 34 H 1.08995 * 109.46867 * 52.91132 * 22 20 18 35 35 H 1.09009 * 109.47300 * 172.90829 * 22 20 18 36 36 H 1.09003 * 109.47326 * 292.90995 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4272 -1.2429 -0.7737 6 16 4.6811 -1.6338 -1.7822 7 8 4.0973 -2.0025 -3.0241 8 8 5.5391 -2.4911 -1.0418 9 6 5.5916 -0.1550 -2.0800 10 1 5.2816 0.7718 -1.6203 11 6 6.7035 -0.1823 -2.8949 12 7 7.0842 -1.3120 -3.4502 13 14 7.6691 1.3855 -3.2100 14 1 8.7322 1.5269 -2.1829 15 1 8.2886 1.3226 -4.5582 16 1 6.7542 2.5530 -3.1395 17 6 3.4658 -1.2796 0.6955 18 6 2.0862 -0.8083 1.2019 19 1 1.4468 -1.6637 1.4204 20 7 2.2251 0.0501 2.3859 21 6 2.6311 -0.7340 3.5600 22 6 3.1692 1.1468 2.1332 23 1 -0.3633 -1.0268 0.0436 24 1 -0.3633 0.5511 0.8675 25 1 -0.3633 0.4756 -0.9109 26 1 2.1561 -0.1712 -2.0836 27 1 1.4520 -1.6699 -1.4030 28 1 7.8663 -1.3311 -4.0237 29 1 3.6601 -2.2968 1.0359 30 1 4.2424 -0.6088 1.0629 31 1 3.5892 -1.2145 3.3623 32 1 2.7269 -0.0740 4.4222 33 1 1.8786 -1.4951 3.7665 34 1 2.8762 1.6768 1.2270 35 1 3.1589 1.8368 2.9771 36 1 4.1729 0.7406 2.0081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251647631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:30 Heat of formation + Delta-G solvation = -107.753524 kcal Electronic energy + Delta-G solvation = -19174.454223 eV Core-core repulsion = 16205.030476 eV Total energy + Delta-G solvation = -2969.423747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59859 -37.50111 -36.64349 -36.22178 -35.23628 -33.22110 -29.50006 -28.52917 -28.31237 -26.86296 -25.04668 -22.21507 -20.81415 -20.57988 -19.28222 -18.40963 -17.61436 -16.97303 -16.26117 -16.06813 -15.83340 -15.53284 -15.14925 -14.78377 -14.29740 -14.04133 -13.88687 -13.51078 -13.39429 -13.19881 -13.05841 -12.86249 -12.65407 -12.59610 -12.56162 -12.45187 -12.35498 -12.33375 -11.95319 -11.61579 -11.33059 -11.30109 -11.03769 -9.81881 -9.29932 -8.79599 -7.55028 0.19696 1.29614 1.30509 1.47103 2.16273 2.52032 2.74362 3.06949 3.50038 3.62072 3.72912 4.00093 4.17497 4.27985 4.35300 4.41277 4.52290 4.57981 4.63434 4.69705 4.72899 4.85825 4.93925 5.00285 5.06925 5.09099 5.11957 5.19089 5.31287 5.39516 5.51495 5.73126 5.84811 6.04736 6.11363 6.71774 8.15862 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.007229 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.229455 B = 3872.239072 C = 4149.843587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 H 0.089 0.911 4 C 0.115 3.885 5 N -1.019 6.019 6 S 2.730 3.270 7 O -1.037 7.037 8 O -1.042 7.042 9 C -1.039 5.039 10 H 0.117 0.883 11 C 0.069 3.931 12 N -0.895 5.895 13 Si 0.992 3.008 14 H -0.254 1.254 15 H -0.260 1.260 16 H -0.246 1.246 17 C 0.083 3.917 18 C 0.087 3.913 19 H 0.111 0.889 20 N -0.524 5.524 21 C 0.016 3.984 22 C 0.007 3.993 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.300 0.700 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 6.716 11.137 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.010 4.010 5 N -0.858 5.858 6 S 2.833 3.167 7 O -1.028 7.028 8 O -1.033 7.033 9 C -1.173 5.173 10 H 0.135 0.865 11 C -0.144 4.144 12 N -0.527 5.527 13 Si 0.809 3.191 14 H -0.178 1.178 15 H -0.184 1.184 16 H -0.169 1.169 17 C -0.044 4.044 18 C -0.023 4.023 19 H 0.129 0.871 20 N -0.247 5.247 21 C -0.132 4.132 22 C -0.141 4.141 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.975 5.874 10.759 16.453 hybrid contribution 1.897 0.337 -0.588 2.014 sum -9.077 6.211 10.172 14.981 Atomic orbital electron populations 1.21600 0.91236 1.02747 1.02854 1.22479 0.97976 0.98977 0.91364 0.89260 1.22254 0.81914 0.98444 0.98399 1.58524 1.25750 1.85280 1.16246 0.99625 0.70991 0.75463 0.70575 1.93297 1.79141 1.85314 1.45003 1.93286 1.66900 1.69214 1.73856 1.30933 1.26285 1.17738 1.42317 0.86462 1.26075 0.96027 1.02133 0.90161 1.69988 1.25868 1.29223 1.27588 0.85117 0.78275 0.76594 0.79118 1.17792 1.18387 1.16923 1.22518 1.01380 1.00761 0.79764 1.22928 0.92852 0.96115 0.90432 0.87085 1.62359 1.47930 1.10913 1.03454 1.22528 0.99320 0.98436 0.92904 1.22634 0.93650 0.94506 1.03290 0.91941 0.90687 0.91708 0.91386 0.91111 0.88973 0.92919 0.92189 0.96307 0.89683 0.89991 0.90946 0.89302 0.96126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.29 71.98 0.67 -1.68 16 2 C -0.09 -2.22 3.13 -9.40 -0.03 -2.25 16 3 H 0.09 2.27 5.84 -2.39 -0.01 2.26 16 4 C 0.12 3.91 6.45 86.85 0.56 4.47 16 5 N -1.02 -43.28 3.70 -506.41 -1.87 -45.15 16 6 S 2.73 153.84 5.22 -56.49 -0.29 153.54 16 7 O -1.04 -64.09 17.60 -128.00 -2.25 -66.34 16 8 O -1.04 -65.01 17.60 -128.00 -2.25 -67.26 16 9 C -1.04 -58.87 9.74 67.73 0.66 -58.21 16 10 H 0.12 6.02 7.81 -2.91 -0.02 6.00 16 11 C 0.07 3.90 5.46 84.65 0.46 4.37 16 12 N -0.90 -54.53 13.19 21.45 0.28 -54.25 16 13 Si 0.99 41.75 29.54 68.60 2.03 43.78 16 14 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 15 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 16 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 17 C 0.08 2.95 5.69 86.73 0.49 3.45 16 18 C 0.09 2.25 2.47 46.11 0.11 2.37 16 19 H 0.11 2.53 7.99 -2.39 -0.02 2.52 16 20 N -0.52 -11.68 5.04 -916.20 -4.62 -16.30 16 21 C 0.02 0.30 9.45 127.69 1.21 1.51 16 22 C 0.01 0.16 8.88 127.69 1.13 1.29 16 23 H 0.06 1.08 8.11 -2.39 -0.02 1.06 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.07 2.22 8.04 -2.39 -0.02 2.20 16 28 H 0.30 16.33 8.31 -92.71 -0.77 15.56 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.06 2.18 5.44 -2.39 -0.01 2.17 16 31 H 0.02 0.40 7.56 -2.39 -0.02 0.39 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.69 5.84 -2.39 -0.01 1.68 16 35 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.02 0.54 6.08 -2.39 -0.01 0.53 16 Total: -1.00 -76.72 301.79 -2.66 -79.38 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.06 Total: 17.31 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 5.27 Total: -44.71 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -6.21 Total: -115.70 kcal Atomic # 8 Polarization: -129.10 SS G_CDS: -4.51 Total: -133.60 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 153.84 SS G_CDS: -0.29 Total: 153.54 kcal Total: -76.72 -2.66 -79.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251647631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.378 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds