Wall clock time and date at job start Mon Mar 30 2020 04:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.45317 * 2 1 4 4 C 1.53049 * 109.46276 * 240.03492 * 2 1 3 5 5 C 1.53186 * 109.31326 * 178.61396 * 4 2 1 6 6 N 1.46928 * 108.77741 * 54.63406 * 5 4 2 7 7 S 1.65608 * 120.62860 * 126.36549 * 6 5 4 8 8 O 1.42094 * 106.40389 * 336.46148 * 7 6 5 9 9 O 1.42100 * 106.39853 * 203.54250 * 7 6 5 10 10 C 1.76202 * 107.21534 * 90.00458 * 7 6 5 11 11 H 1.07994 * 119.99832 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99608 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 C 1.46925 * 118.73834 * 306.64543 * 6 5 4 19 19 C 1.52761 * 109.00939 * 53.30616 * 18 6 5 20 20 H 1.08996 * 109.35982 * 65.50296 * 19 18 6 21 21 C 1.52999 * 109.58821 * 185.53411 * 19 18 6 22 22 N 1.46893 * 109.47422 * 294.98425 * 21 19 18 23 23 H 1.09000 * 109.47326 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47376 * 299.96484 * 1 2 3 25 25 H 1.08995 * 109.46868 * 59.96813 * 1 2 3 26 26 H 1.09004 * 109.49391 * 58.66139 * 4 2 1 27 27 H 1.08999 * 109.52098 * 298.58475 * 4 2 1 28 28 H 1.09005 * 109.59065 * 294.85106 * 5 4 2 29 29 H 1.08997 * 109.58665 * 174.42304 * 5 4 2 30 30 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 31 31 H 1.09003 * 109.58225 * 173.14150 * 18 6 5 32 32 H 1.09004 * 109.58631 * 293.56162 * 18 6 5 33 33 H 1.09002 * 109.47175 * 54.98592 * 21 19 18 34 34 H 1.09004 * 109.46952 * 174.97706 * 21 19 18 35 35 H 1.00899 * 111.00092 * 56.04621 * 22 21 19 36 36 H 1.00903 * 111.00155 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2488 0.0000 7 16 5.1658 -2.4886 -0.0001 8 8 5.0241 -3.1501 -1.2496 9 8 5.0244 -3.1497 1.2498 10 6 6.7716 -1.7632 -0.0003 11 1 6.8786 -0.6885 -0.0009 12 6 7.8914 -2.5676 -0.0010 13 7 7.7610 -3.8762 -0.0008 14 14 9.5937 -1.7986 -0.0005 15 1 9.4685 -0.3188 -0.0001 16 1 10.3330 -2.2320 -1.2134 17 1 10.3331 -2.2335 1.2116 18 6 3.5671 -0.6923 1.2642 19 6 2.0398 -0.7208 1.2500 20 1 1.6978 -1.7556 1.2383 21 6 1.5021 -0.0195 2.4990 22 7 1.8922 -0.7798 3.6938 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5133 0.8903 25 1 -0.3633 0.5143 -0.8897 26 1 1.6572 -0.2207 -2.1399 27 1 1.6978 -1.7556 -1.2390 28 1 3.9143 0.3410 -1.3673 29 1 3.9417 -1.2844 -2.0984 30 1 6.8770 -4.2755 -0.0007 31 1 3.9347 -1.2908 2.0978 32 1 3.9097 0.3369 1.3716 33 1 1.9166 0.9870 2.5574 34 1 0.4150 0.0381 2.4437 35 1 2.8929 -0.9025 3.7336 36 1 1.5482 -0.3368 4.5326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253185840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:52 Heat of formation + Delta-G solvation = -137.629275 kcal Electronic energy + Delta-G solvation = -19195.034778 eV Core-core repulsion = 16224.315521 eV Total energy + Delta-G solvation = -2970.719257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22261 -37.79056 -36.57445 -35.98527 -35.34477 -34.39297 -31.43864 -28.64209 -27.69897 -26.18480 -23.61592 -22.57273 -21.42180 -20.91596 -19.43549 -18.37880 -17.13127 -16.92275 -16.59518 -15.97351 -15.78482 -15.40829 -15.38246 -14.94285 -14.79331 -14.53060 -14.13817 -14.05246 -13.12398 -13.04006 -12.98944 -12.87298 -12.79501 -12.75405 -12.56455 -12.40264 -12.09578 -11.97178 -11.69685 -11.24464 -11.21981 -11.15790 -10.75609 -9.81666 -9.57210 -9.40387 -7.66812 0.08699 1.42891 1.48746 1.72056 2.29550 2.51328 2.56525 3.45855 3.54326 3.73731 3.76485 3.90297 3.96549 4.20167 4.24320 4.36081 4.48116 4.49555 4.65661 4.73163 4.75328 4.80772 4.88046 4.98582 5.01459 5.15267 5.19454 5.25069 5.38408 5.48054 5.55351 5.75834 5.86483 6.24373 6.45983 6.60886 7.90692 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.006807 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.494195 B = 4112.639147 C = 4443.781447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.111 3.889 6 N -1.000 6.000 7 S 2.693 3.307 8 O -1.044 7.044 9 O -1.041 7.041 10 C -1.099 5.099 11 H 0.119 0.881 12 C 0.033 3.967 13 N -0.878 5.878 14 Si 1.126 2.874 15 H -0.251 1.251 16 H -0.261 1.261 17 H -0.260 1.260 18 C 0.120 3.880 19 C -0.094 4.094 20 H 0.052 0.948 21 C 0.072 3.928 22 N -0.869 5.869 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.255 0.745 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.339 0.661 36 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 14.107 1.757 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.014 4.014 6 N -0.839 5.839 7 S 2.797 3.203 8 O -1.034 7.034 9 O -1.031 7.031 10 C -1.233 5.233 11 H 0.137 0.863 12 C -0.177 4.177 13 N -0.508 5.508 14 Si 0.940 3.060 15 H -0.174 1.174 16 H -0.185 1.185 17 H -0.185 1.185 18 C -0.005 4.005 19 C -0.114 4.114 20 H 0.070 0.930 21 C -0.059 4.059 22 N -0.401 5.401 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.626 12.217 1.440 16.255 hybrid contribution -0.635 0.875 0.249 1.109 sum -11.261 13.092 1.689 17.351 Atomic orbital electron populations 1.21858 0.93341 1.01779 1.02986 1.21075 0.96830 0.99572 0.92316 0.89204 1.21976 0.93543 1.00898 0.99878 1.21602 0.95875 0.99767 0.84138 1.57387 1.59195 1.54906 1.12367 1.00588 0.75135 0.72955 0.71602 1.93339 1.88551 1.74821 1.46716 1.93350 1.88488 1.74766 1.46497 1.31978 1.15030 1.07620 1.68708 0.86281 1.27875 1.10476 0.93175 0.86187 1.70948 1.26967 1.12273 1.40631 0.83016 0.67728 0.76052 0.79254 1.17416 1.18502 1.18464 1.21481 0.95251 0.99347 0.84469 1.21490 0.93520 1.00182 0.96253 0.92953 1.21870 1.01337 0.94368 0.88278 1.58708 1.19361 1.56320 1.05701 0.93706 0.90989 0.91078 0.87835 0.93561 0.89443 0.91238 0.93374 0.91267 0.90053 0.93649 0.88934 0.84757 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.82 71.98 0.63 -1.77 16 2 C -0.08 -1.72 2.23 -10.77 -0.02 -1.74 16 3 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.12 -3.22 5.36 30.67 0.16 -3.06 16 5 C 0.11 3.69 6.48 86.36 0.56 4.25 16 6 N -1.00 -40.71 3.30 -513.84 -1.69 -42.41 16 7 S 2.69 147.47 4.37 -56.49 -0.25 147.23 16 8 O -1.04 -62.78 16.23 -128.00 -2.08 -64.86 16 9 O -1.04 -62.53 16.22 -128.00 -2.08 -64.60 16 10 C -1.10 -61.94 9.75 67.73 0.66 -61.28 16 11 H 0.12 6.09 7.81 -2.91 -0.02 6.07 16 12 C 0.03 1.89 5.46 84.65 0.46 2.36 16 13 N -0.88 -55.89 13.66 21.45 0.29 -55.60 16 14 Si 1.13 47.46 29.90 68.60 2.05 49.51 16 15 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 18 C 0.12 4.05 5.37 86.22 0.46 4.51 16 19 C -0.09 -2.56 2.07 -10.86 -0.02 -2.58 16 20 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 21 C 0.07 1.51 6.01 86.30 0.52 2.03 16 22 N -0.87 -20.21 9.62 -186.73 -1.80 -22.00 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 1.00 6.29 -2.39 -0.02 0.98 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.07 2.62 6.92 -2.39 -0.02 2.60 16 30 H 0.26 17.07 6.52 -92.71 -0.60 16.47 16 31 H 0.07 2.66 5.72 -2.39 -0.01 2.65 16 32 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.64 6.14 -2.38 -0.01 1.62 16 35 H 0.34 8.68 7.38 -89.69 -0.66 8.02 16 36 H 0.35 6.13 9.08 -89.69 -0.81 5.32 16 Total: -1.00 -77.86 295.30 -2.35 -80.21 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.22 Total: 29.80 kcal Atomic # 6 Polarization: -60.69 SS G_CDS: 3.42 Total: -57.28 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -3.20 Total: -120.01 kcal Atomic # 8 Polarization: -125.31 SS G_CDS: -4.15 Total: -129.46 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Atomic # 16 Polarization: 147.47 SS G_CDS: -0.25 Total: 147.23 kcal Total: -77.86 -2.35 -80.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253185840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.423 kcal (2) G-P(sol) polarization free energy of solvation -77.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds