Wall clock time and date at job start Mon Mar 30 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39457 * 126.25625 * 2 1 4 4 C 1.38612 * 133.35833 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.82204 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.90480 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47133 * 269.97719 * 6 5 4 8 8 C 1.46897 * 111.00158 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47387 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99906 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00263 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47191 * 90.00360 * 13 11 9 15 15 H 1.48504 * 109.47267 * 210.00244 * 13 11 9 16 16 H 1.48501 * 109.47399 * 330.00165 * 13 11 9 17 17 C 1.38407 * 120.19004 * 359.97438 * 5 4 3 18 18 C 1.38129 * 120.30872 * 0.03584 * 17 5 4 19 19 C 1.38614 * 119.91546 * 0.26265 * 18 17 5 20 20 O 1.35558 * 132.99249 * 179.71720 * 19 18 17 21 21 C 1.34231 * 109.17234 * 179.97438 * 20 19 18 22 22 O 1.21601 * 125.27049 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47513 * 90.00260 * 1 2 3 24 24 H 1.09004 * 109.46767 * 210.00244 * 1 2 3 25 25 H 1.08997 * 109.47397 * 329.99918 * 1 2 3 26 26 H 1.07994 * 120.08858 * 359.96071 * 4 3 2 27 27 H 1.08995 * 109.47175 * 29.97683 * 6 5 4 28 28 H 1.09002 * 109.47082 * 149.98603 * 6 5 4 29 29 H 1.00897 * 110.99833 * 303.96040 * 7 6 5 30 30 H 1.08996 * 109.47134 * 300.00428 * 8 7 6 31 31 H 1.09010 * 109.46540 * 60.00250 * 8 7 6 32 32 H 0.96998 * 119.99615 * 180.02562 * 12 11 9 33 33 H 1.07996 * 119.84806 * 180.02562 * 17 5 4 34 34 H 1.08002 * 120.03785 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2897 1.1246 0.0000 4 6 2.0398 2.4880 -0.0005 5 6 3.0948 3.3797 0.0002 6 6 2.8252 4.8624 0.0003 7 7 2.7389 5.3445 -1.3847 8 6 2.4757 6.7892 -1.4238 9 6 2.3933 7.2462 -2.8574 10 1 2.5231 6.5345 -3.6594 11 6 2.1524 8.5728 -3.1454 12 7 1.9948 9.4396 -2.1688 13 14 2.0510 9.1394 -4.9225 14 1 0.6466 9.0391 -5.3947 15 1 2.5062 10.5496 -5.0193 16 1 2.9196 8.2799 -5.7664 17 6 4.3986 2.9153 0.0019 18 6 4.6552 1.5581 0.0021 19 6 3.6031 0.6556 -0.0048 20 8 3.5471 -0.6988 -0.0113 21 6 2.2621 -1.0868 -0.0158 22 8 1.8769 -2.2402 -0.0216 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.0231 2.8521 -0.0016 27 1 1.8842 5.0606 0.5133 28 1 3.6355 5.3790 0.5149 29 1 3.5752 5.1148 -1.9002 30 1 1.5321 7.0003 -0.9207 31 1 3.2833 7.3194 -0.9188 32 1 1.8249 10.3728 -2.3715 33 1 5.2192 3.6174 0.0028 34 1 5.6743 1.2006 0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258895221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:27 Heat of formation + Delta-G solvation = -15.903052 kcal Electronic energy + Delta-G solvation = -18625.939655 eV Core-core repulsion = 15525.054891 eV Total energy + Delta-G solvation = -3100.884763 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.34680 -38.96141 -37.71745 -36.27191 -35.06895 -32.64053 -30.90711 -30.19256 -28.10498 -26.99647 -24.63999 -22.96357 -22.17178 -21.88438 -21.40438 -18.39351 -17.73594 -17.61399 -16.74741 -16.15517 -15.33434 -15.19033 -14.72227 -14.38918 -14.33078 -14.08296 -13.96064 -13.61086 -13.19457 -12.81277 -12.71196 -12.11629 -12.05657 -11.71017 -11.37857 -11.15020 -11.00283 -10.79125 -10.75670 -10.64931 -10.01456 -9.29543 -8.78845 -8.54853 -8.25004 -7.44116 -6.10194 -4.12523 0.98448 1.03296 1.93788 2.31655 2.71083 3.28302 3.34466 3.37779 3.44356 4.20012 4.37110 4.38161 4.70001 4.94994 4.99549 5.08659 5.18499 5.20132 5.26142 5.28972 5.43000 5.51508 5.75243 5.90336 6.02988 6.08299 6.14243 6.43655 6.54733 7.05491 7.11379 7.30358 7.47537 7.69220 8.02789 8.25214 8.48191 8.96425 9.52925 11.00794 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.003632 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.883596 B = 7707.656431 C = 7982.313494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.548 5.548 3 C 0.066 3.934 4 C -0.079 4.079 5 C -0.044 4.044 6 C 0.094 3.906 7 N -0.684 5.684 8 C 0.193 3.807 9 C -0.516 4.516 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.102 4.102 18 C -0.078 4.078 19 C 0.023 3.977 20 O -0.238 6.238 21 C 0.634 3.366 22 O -0.497 6.497 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.332 0.668 30 H 0.029 0.971 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.141 0.859 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -14.531 6.901 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.280 5.280 3 C -0.031 4.031 4 C -0.100 4.100 5 C -0.045 4.045 6 C -0.036 4.036 7 N -0.315 5.315 8 C 0.067 3.933 9 C -0.555 4.555 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.121 4.121 18 C -0.097 4.097 19 C -0.024 4.024 20 O -0.144 6.144 21 C 0.389 3.611 22 O -0.381 6.381 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.155 0.845 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.148 0.852 30 H 0.047 0.953 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.451 -15.351 6.871 16.824 hybrid contribution 0.581 0.721 -0.698 1.160 sum 1.032 -14.629 6.173 15.912 Atomic orbital electron populations 1.21818 0.73688 1.04678 1.03806 1.45671 1.08259 1.04889 1.69229 1.18530 0.88822 0.89902 1.05858 1.19984 1.00808 0.87385 1.01859 1.19906 0.91918 0.96424 0.96275 1.20903 1.01102 0.88103 0.93451 1.60757 1.42151 1.19698 1.08894 1.19596 0.95945 0.80252 0.97496 1.21162 1.48887 0.93328 0.92087 0.91903 1.24983 0.95296 0.96648 0.97576 1.69957 1.49148 1.03140 1.31444 0.86475 0.78402 0.77768 0.84621 1.20595 1.21269 1.19808 1.20937 0.97099 0.93723 1.00360 1.19960 0.96993 0.90668 1.02042 1.18971 0.94548 0.80178 1.08679 1.84955 1.27706 1.21276 1.80449 1.18510 0.78671 0.85350 0.78567 1.91133 1.74356 1.16236 1.56400 0.90674 0.89279 0.89231 0.84489 0.90454 0.94576 0.85173 0.95258 0.99330 0.92836 0.84095 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 11.06 59.85 0.66 1.50 16 2 N -0.55 -6.67 3.21 -126.44 -0.41 -7.08 16 3 C 0.07 0.83 6.84 -83.80 -0.57 0.26 16 4 C -0.08 -0.97 9.68 -39.48 -0.38 -1.35 16 5 C -0.04 -0.56 5.39 -104.60 -0.56 -1.12 16 6 C 0.09 1.42 5.81 -4.97 -0.03 1.39 16 7 N -0.68 -13.27 6.48 -116.33 -0.75 -14.02 16 8 C 0.19 4.74 5.44 -4.98 -0.03 4.71 16 9 C -0.52 -14.02 9.32 -34.44 -0.32 -14.34 16 10 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 13 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 17 C -0.10 -1.12 9.68 -39.56 -0.38 -1.50 16 18 C -0.08 -0.84 10.06 -39.48 -0.40 -1.23 16 19 C 0.02 0.29 7.35 -38.99 -0.29 0.00 16 20 O -0.24 -3.39 10.72 -21.99 -0.24 -3.62 16 21 C 0.63 9.19 9.07 54.06 0.49 9.68 16 22 O -0.50 -8.27 17.81 -19.01 -0.34 -8.61 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 28 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.33 6.18 8.72 -39.29 -0.34 5.83 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H -0.01 -0.29 8.14 -51.92 -0.42 -0.71 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 303.36 15.07 4.57 4.57 Total: -1.00 -31.54 303.36 -7.46 -39.00 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.11 Total: -0.55 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.91 Total: -0.55 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.42 Total: -46.30 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.57 Total: -12.23 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.54 -7.46 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258895221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.097 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds