Wall clock time and date at job start Mon Mar 30 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39457 * 126.25625 * 2 1 4 4 C 1.38612 * 133.35833 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.82204 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.90480 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47133 * 269.97719 * 6 5 4 8 8 C 1.46897 * 111.00158 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47387 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99906 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00263 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47191 * 90.00360 * 13 11 9 15 15 H 1.48504 * 109.47267 * 210.00244 * 13 11 9 16 16 H 1.48501 * 109.47399 * 330.00165 * 13 11 9 17 17 C 1.38407 * 120.19004 * 359.97438 * 5 4 3 18 18 C 1.38129 * 120.30872 * 0.03584 * 17 5 4 19 19 C 1.38614 * 119.91546 * 0.26265 * 18 17 5 20 20 O 1.35558 * 132.99249 * 179.71720 * 19 18 17 21 21 C 1.34231 * 109.17234 * 179.97438 * 20 19 18 22 22 O 1.21601 * 125.27049 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47513 * 90.00260 * 1 2 3 24 24 H 1.09004 * 109.46767 * 210.00244 * 1 2 3 25 25 H 1.08997 * 109.47397 * 329.99918 * 1 2 3 26 26 H 1.07994 * 120.08858 * 359.96071 * 4 3 2 27 27 H 1.08995 * 109.47175 * 29.97683 * 6 5 4 28 28 H 1.09002 * 109.47082 * 149.98603 * 6 5 4 29 29 H 1.00897 * 110.99833 * 303.96040 * 7 6 5 30 30 H 1.08996 * 109.47134 * 300.00428 * 8 7 6 31 31 H 1.09010 * 109.46540 * 60.00250 * 8 7 6 32 32 H 0.96998 * 119.99615 * 180.02562 * 12 11 9 33 33 H 1.07996 * 119.84806 * 180.02562 * 17 5 4 34 34 H 1.08002 * 120.03785 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2897 1.1246 0.0000 4 6 2.0398 2.4880 -0.0005 5 6 3.0948 3.3797 0.0002 6 6 2.8252 4.8624 0.0003 7 7 2.7389 5.3445 -1.3847 8 6 2.4757 6.7892 -1.4238 9 6 2.3933 7.2462 -2.8574 10 1 2.5231 6.5345 -3.6594 11 6 2.1524 8.5728 -3.1454 12 7 1.9948 9.4396 -2.1688 13 14 2.0510 9.1394 -4.9225 14 1 0.6466 9.0391 -5.3947 15 1 2.5062 10.5496 -5.0193 16 1 2.9196 8.2799 -5.7664 17 6 4.3986 2.9153 0.0019 18 6 4.6552 1.5581 0.0021 19 6 3.6031 0.6556 -0.0048 20 8 3.5471 -0.6988 -0.0113 21 6 2.2621 -1.0868 -0.0158 22 8 1.8769 -2.2402 -0.0216 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.0231 2.8521 -0.0016 27 1 1.8842 5.0606 0.5133 28 1 3.6355 5.3790 0.5149 29 1 3.5752 5.1148 -1.9002 30 1 1.5321 7.0003 -0.9207 31 1 3.2833 7.3194 -0.9188 32 1 1.8249 10.3728 -2.3715 33 1 5.2192 3.6174 0.0028 34 1 5.6743 1.2006 0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258895221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:26 Heat of formation + Delta-G solvation = -36.489792 kcal Electronic energy + Delta-G solvation = -18626.832363 eV Core-core repulsion = 15525.054891 eV Total energy + Delta-G solvation = -3101.777471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.35932 -40.00180 -38.82342 -37.35683 -36.53505 -34.52922 -32.06442 -31.22778 -29.08126 -28.54925 -26.09871 -23.94017 -23.66233 -22.91094 -22.80522 -19.41578 -18.78920 -18.65357 -18.48240 -17.44763 -16.75262 -16.40055 -16.18014 -15.50530 -15.28425 -15.18832 -15.05099 -14.95122 -14.41240 -14.33117 -13.55209 -13.46734 -13.22150 -13.10927 -12.91912 -12.64120 -12.58020 -12.26938 -12.05484 -11.87947 -11.61883 -11.27500 -10.62628 -9.76085 -9.26138 -9.03348 -8.19432 -6.29470 0.02817 0.07171 0.98568 1.24717 1.44959 1.45449 1.56597 1.74101 2.41346 2.50117 3.14752 3.26548 3.52837 3.63869 3.89314 4.10855 4.17985 4.26452 4.37787 4.40799 4.51298 4.66323 4.76589 4.81581 4.97842 5.13638 5.16275 5.19584 5.33937 5.47592 5.56419 5.65355 6.05420 6.06848 6.42881 6.47053 6.75551 6.93351 7.41487 8.91656 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.003632 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.883596 B = 7707.656431 C = 7982.313494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.542 5.542 3 C 0.058 3.942 4 C -0.077 4.077 5 C -0.052 4.052 6 C 0.098 3.902 7 N -0.684 5.684 8 C 0.207 3.793 9 C -0.534 4.534 10 H 0.063 0.937 11 C 0.004 3.996 12 N -0.933 5.933 13 Si 0.968 3.032 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.264 1.264 17 C -0.093 4.093 18 C -0.068 4.068 19 C 0.007 3.993 20 O -0.247 6.247 21 C 0.627 3.373 22 O -0.528 6.528 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.145 0.855 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.338 0.662 30 H 0.004 0.996 31 H -0.032 1.032 32 H 0.264 0.736 33 H 0.163 0.837 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 -14.667 6.302 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.274 5.274 3 C -0.039 4.039 4 C -0.099 4.099 5 C -0.054 4.054 6 C -0.031 4.031 7 N -0.315 5.315 8 C 0.080 3.920 9 C -0.572 4.572 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.792 3.208 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.188 1.188 17 C -0.112 4.112 18 C -0.087 4.087 19 C -0.039 4.039 20 O -0.153 6.153 21 C 0.382 3.618 22 O -0.415 6.415 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.129 0.871 26 H 0.163 0.837 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.155 0.845 30 H 0.022 0.978 31 H -0.014 1.014 32 H 0.073 0.927 33 H 0.180 0.820 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.943 -15.490 6.278 16.740 hybrid contribution 0.446 0.750 -0.453 0.983 sum 1.389 -14.740 5.825 15.910 Atomic orbital electron populations 1.22151 0.71688 1.06104 1.04900 1.45836 1.09370 1.04094 1.68054 1.18588 0.88955 0.90000 1.06364 1.20029 1.01234 0.87159 1.01440 1.19699 0.92992 0.94797 0.97904 1.20867 1.01477 0.89775 0.90981 1.60583 1.42774 1.16296 1.11846 1.19229 0.93900 0.83102 0.95799 1.21554 1.48627 0.93703 0.93331 0.91839 1.25868 0.94852 0.96854 1.01900 1.70073 1.50065 1.03508 1.33660 0.85409 0.78571 0.77344 0.79434 1.20104 1.20885 1.18814 1.21161 0.96923 0.94216 0.98928 1.20265 0.97891 0.90059 1.00441 1.19389 0.95451 0.79790 1.09255 1.84910 1.27808 1.22176 1.80366 1.18606 0.78926 0.85477 0.78760 1.91098 1.74908 1.17402 1.58056 0.89750 0.88632 0.87102 0.83681 0.90627 0.93721 0.84513 0.97757 1.01429 0.92679 0.81971 0.81495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 11.06 127.77 1.41 2.79 16 2 N -0.54 -12.61 3.21 -784.50 -2.52 -15.13 16 3 C 0.06 1.37 6.84 38.31 0.26 1.64 16 4 C -0.08 -1.76 9.68 22.33 0.22 -1.55 16 5 C -0.05 -1.23 5.39 -19.85 -0.11 -1.34 16 6 C 0.10 2.83 5.81 85.56 0.50 3.33 16 7 N -0.68 -25.95 6.48 -521.97 -3.38 -29.33 16 8 C 0.21 10.24 5.44 85.56 0.47 10.70 16 9 C -0.53 -28.91 9.32 25.60 0.24 -28.67 16 10 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 11 C 0.00 0.20 5.46 84.65 0.46 0.66 16 12 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 13 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 17 C -0.09 -1.79 9.68 22.28 0.22 -1.57 16 18 C -0.07 -1.27 10.06 22.33 0.22 -1.05 16 19 C 0.01 0.17 7.35 22.65 0.17 0.34 16 20 O -0.25 -6.83 10.72 8.51 0.09 -6.74 16 21 C 0.63 17.94 9.07 129.79 1.18 19.12 16 22 O -0.53 -17.65 17.81 19.18 0.34 -17.31 16 23 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.10 1.35 8.07 -2.38 -0.02 1.33 16 25 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 27 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 28 H 0.04 1.24 8.08 -2.39 -0.02 1.22 16 29 H 0.34 12.12 8.72 -89.70 -0.78 11.34 16 30 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 31 H -0.03 -1.68 8.14 -2.38 -0.02 -1.70 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -67.42 303.36 2.42 -65.00 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.34 Total: 8.27 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.23 Total: 4.40 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -5.61 Total: -98.40 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.43 Total: -24.05 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.42 2.42 -65.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258895221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.514 kcal (2) G-P(sol) polarization free energy of solvation -67.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds