Wall clock time and date at job start Mon Mar 30 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 120.00115 * 2 1 4 4 H 1.07997 * 119.99977 * 202.73101 * 3 2 1 5 5 C 1.38810 * 119.99951 * 22.72663 * 3 2 1 6 6 N 1.31619 * 120.00054 * 13.38641 * 5 3 2 7 7 Si 1.86800 * 120.00335 * 193.37912 * 5 3 2 8 8 H 1.48501 * 109.46962 * 60.00370 * 7 5 3 9 9 H 1.48497 * 109.47269 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47140 * 300.00483 * 7 5 3 11 11 C 1.46502 * 120.00009 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47170 * 90.00035 * 11 2 1 13 13 H 1.08994 * 110.78039 * 303.21628 * 12 11 2 14 14 C 1.55155 * 110.71987 * 66.45614 * 12 11 2 15 15 C 1.54904 * 101.58471 * 153.86342 * 14 12 11 16 16 N 1.47422 * 104.83224 * 322.99022 * 15 14 12 17 17 S 1.65600 * 125.64837 * 204.09027 * 16 15 14 18 18 C 1.81403 * 104.44908 * 90.02469 * 17 16 15 19 19 O 1.42100 * 104.27643 * 206.09671 * 17 16 15 20 20 O 1.42102 * 104.27895 * 333.95475 * 17 16 15 21 21 C 1.47019 * 108.70344 * 24.12672 * 16 15 14 22 22 H 1.08989 * 109.47354 * 275.12951 * 1 2 3 23 23 H 1.09006 * 109.46956 * 35.13554 * 1 2 3 24 24 H 1.09005 * 109.47028 * 155.12789 * 1 2 3 25 25 H 0.96995 * 120.00604 * 179.97438 * 6 5 3 26 26 H 1.09003 * 109.46981 * 330.00278 * 11 2 1 27 27 H 1.09002 * 109.47067 * 210.00233 * 11 2 1 28 28 H 1.09003 * 111.00788 * 35.79021 * 14 12 11 29 29 H 1.09004 * 111.00198 * 271.93717 * 14 12 11 30 30 H 1.09008 * 110.36972 * 81.82684 * 15 14 12 31 31 H 1.09000 * 110.37315 * 204.14890 * 15 14 12 32 32 H 1.09006 * 109.47071 * 59.99745 * 18 17 16 33 33 H 1.08999 * 109.47123 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.47129 * 300.00081 * 18 17 16 35 35 H 1.08994 * 109.88627 * 239.52509 * 21 16 15 36 36 H 1.09007 * 110.01267 * 118.42900 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1667 1.2222 -0.3614 5 6 1.5365 2.3413 0.4644 6 7 0.4110 2.2622 1.1422 7 14 2.3086 4.0086 0.1277 8 1 2.4091 4.2205 -1.3387 9 1 1.4652 5.0746 0.7256 10 1 3.6656 4.0561 0.7288 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4417 13 1 1.5155 -1.7934 -1.9923 14 6 3.4229 -0.7313 -2.1529 15 6 4.0580 -1.6482 -3.2279 16 7 4.2032 -2.9586 -2.5683 17 16 5.2882 -4.1364 -2.9899 18 6 6.7617 -3.7709 -1.9970 19 8 4.6806 -5.3448 -2.5544 20 8 5.5442 -3.9002 -4.3676 21 6 3.2245 -3.0469 -1.4747 22 1 -0.3633 0.0919 1.0234 23 1 -0.3633 0.8405 -0.5915 24 1 -0.3633 -0.9324 -0.4323 25 1 -0.0174 3.0695 1.4671 26 1 1.6084 -2.0282 0.5147 27 1 3.1499 -1.1382 0.5144 28 1 4.1785 -0.3588 -1.4612 29 1 2.8779 0.0922 -2.6143 30 1 3.4005 -1.7299 -4.0934 31 1 5.0333 -1.2636 -3.5264 32 1 6.5060 -3.8132 -0.9382 33 1 7.5369 -4.5061 -2.2129 34 1 7.1274 -2.7738 -2.2428 35 1 3.7404 -3.2004 -0.5270 36 1 2.5336 -3.8699 -1.6580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:48 Heat of formation + Delta-G solvation = -43.259841 kcal Electronic energy + Delta-G solvation = -18618.457163 eV Core-core repulsion = 15651.830072 eV Total energy + Delta-G solvation = -2966.627091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.50704 -37.15930 -36.00056 -35.37166 -31.96596 -30.12518 -29.57508 -29.06754 -25.93198 -25.21818 -22.13681 -21.40741 -19.57837 -18.90145 -17.60502 -16.89820 -16.47904 -15.94785 -15.30687 -14.66401 -13.90891 -13.67078 -13.58059 -13.37254 -13.21551 -13.19574 -12.86436 -12.43936 -12.17799 -12.11206 -11.99817 -11.52536 -11.22635 -11.13604 -10.98703 -10.80619 -10.65431 -10.42696 -10.28155 -10.10936 -9.85219 -9.76345 -8.88314 -8.53932 -6.73447 -5.72128 -3.18484 0.16698 2.60282 3.36651 3.42896 3.43407 3.79816 4.00296 4.48099 4.57387 4.74052 4.82658 5.12020 5.28151 5.47160 5.49302 5.50368 5.59942 5.71043 5.90862 5.98336 6.16483 6.21922 6.32528 6.42625 6.56678 6.63235 6.73052 6.77554 6.94999 7.38099 7.73430 7.80584 8.39911 9.23778 9.87980 10.37300 11.32617 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.035305 B = 0.004976 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.896077 B = 5625.210525 C = 6031.654161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.252 4.252 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.901 3.099 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.160 3.840 12 C -0.115 4.115 13 H 0.076 0.924 14 C -0.109 4.109 15 C 0.119 3.881 16 N -1.012 6.012 17 S 2.628 3.372 18 C -0.675 4.675 19 O -0.957 6.957 20 O -0.959 6.959 21 C 0.125 3.875 22 H 0.030 0.970 23 H 0.039 0.961 24 H -0.003 1.003 25 H 0.252 0.748 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 -10.064 -5.724 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.732 3.268 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.032 3.968 12 C -0.138 4.138 13 H 0.094 0.906 14 C -0.148 4.148 15 C -0.006 4.006 16 N -0.850 5.850 17 S 2.721 3.279 18 C -0.825 4.825 19 O -0.948 6.948 20 O -0.949 6.949 21 C -0.001 4.001 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.080 0.920 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.167 -10.679 -6.271 15.408 hybrid contribution 0.793 1.407 0.373 1.658 sum 9.960 -9.272 -5.898 14.831 Atomic orbital electron populations 1.20784 0.82717 0.95344 0.99396 1.43847 1.01753 1.00588 1.86007 1.19147 0.98061 0.85451 1.35537 0.91254 1.25018 0.97935 0.98447 0.98348 1.70057 1.19522 1.27179 1.38504 0.86392 0.78386 0.84134 0.77935 1.21114 1.21729 1.21065 1.20705 0.96233 0.88605 0.91260 1.23023 0.97689 0.91705 1.01377 0.90577 1.22731 0.98425 0.97193 0.96460 1.22116 1.00656 0.81602 0.96178 1.58565 1.49197 1.31680 1.45607 1.04333 0.75513 0.73075 0.74933 1.30598 1.22555 1.12087 1.17224 1.93592 1.74010 1.43575 1.83630 1.93593 1.85920 1.85366 1.30060 1.21817 0.90515 0.99588 0.88132 0.95184 0.94197 0.98395 0.93767 0.94370 0.93323 0.90818 0.89514 0.91538 0.91457 0.85340 0.85814 0.85451 0.91971 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 8.98 59.85 0.54 4.39 16 2 N -0.60 -14.09 2.87 -181.12 -0.52 -14.61 16 3 C -0.25 -6.47 8.97 -15.06 -0.14 -6.60 16 4 H 0.07 1.70 6.69 -52.49 -0.35 1.35 16 5 C 0.00 0.02 5.09 -17.43 -0.09 -0.07 16 6 N -0.91 -25.86 10.71 55.49 0.59 -25.27 16 7 Si 0.90 21.15 29.57 -169.99 -5.03 16.12 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.16 2.99 5.03 -4.04 -0.02 2.97 16 12 C -0.11 -1.80 3.20 -88.79 -0.28 -2.08 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.11 -1.64 5.21 -24.59 -0.13 -1.77 16 15 C 0.12 1.52 6.89 -2.53 -0.02 1.51 16 16 N -1.01 -12.68 3.62 -111.42 -0.40 -13.08 16 17 S 2.63 30.22 6.29 -107.50 -0.68 29.55 16 18 C -0.68 -5.19 10.99 101.05 1.11 -4.08 16 19 O -0.96 -13.93 17.60 -57.54 -1.01 -14.94 16 20 O -0.96 -13.84 17.60 -57.54 -1.01 -14.86 16 21 C 0.13 1.66 6.49 -3.06 -0.02 1.64 16 22 H 0.03 0.78 7.34 -51.94 -0.38 0.40 16 23 H 0.04 1.02 7.33 -51.93 -0.38 0.64 16 24 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 25 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 28 H 0.07 1.14 7.42 -51.93 -0.39 0.75 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.13 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.12 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.13 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -32.66 304.61 -8.19 -40.85 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -5.67 Total: -4.24 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 0.95 Total: -4.10 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.33 Total: -52.96 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -2.03 Total: -29.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 30.22 SS G_CDS: -0.68 Total: 29.55 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.66 -8.19 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.410 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds