Wall clock time and date at job start Mon Mar 30 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 120.00115 * 2 1 4 4 H 1.07997 * 119.99977 * 202.73101 * 3 2 1 5 5 C 1.38810 * 119.99951 * 22.72663 * 3 2 1 6 6 N 1.31619 * 120.00054 * 13.38641 * 5 3 2 7 7 Si 1.86800 * 120.00335 * 193.37912 * 5 3 2 8 8 H 1.48501 * 109.46962 * 60.00370 * 7 5 3 9 9 H 1.48497 * 109.47269 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47140 * 300.00483 * 7 5 3 11 11 C 1.46502 * 120.00009 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47170 * 90.00035 * 11 2 1 13 13 H 1.08994 * 110.78039 * 303.21628 * 12 11 2 14 14 C 1.55155 * 110.71987 * 66.45614 * 12 11 2 15 15 C 1.54904 * 101.58471 * 153.86342 * 14 12 11 16 16 N 1.47422 * 104.83224 * 322.99022 * 15 14 12 17 17 S 1.65600 * 125.64837 * 204.09027 * 16 15 14 18 18 C 1.81403 * 104.44908 * 90.02469 * 17 16 15 19 19 O 1.42100 * 104.27643 * 206.09671 * 17 16 15 20 20 O 1.42102 * 104.27895 * 333.95475 * 17 16 15 21 21 C 1.47019 * 108.70344 * 24.12672 * 16 15 14 22 22 H 1.08989 * 109.47354 * 275.12951 * 1 2 3 23 23 H 1.09006 * 109.46956 * 35.13554 * 1 2 3 24 24 H 1.09005 * 109.47028 * 155.12789 * 1 2 3 25 25 H 0.96995 * 120.00604 * 179.97438 * 6 5 3 26 26 H 1.09003 * 109.46981 * 330.00278 * 11 2 1 27 27 H 1.09002 * 109.47067 * 210.00233 * 11 2 1 28 28 H 1.09003 * 111.00788 * 35.79021 * 14 12 11 29 29 H 1.09004 * 111.00198 * 271.93717 * 14 12 11 30 30 H 1.09008 * 110.36972 * 81.82684 * 15 14 12 31 31 H 1.09000 * 110.37315 * 204.14890 * 15 14 12 32 32 H 1.09006 * 109.47071 * 59.99745 * 18 17 16 33 33 H 1.08999 * 109.47123 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.47129 * 300.00081 * 18 17 16 35 35 H 1.08994 * 109.88627 * 239.52509 * 21 16 15 36 36 H 1.09007 * 110.01267 * 118.42900 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1667 1.2222 -0.3614 5 6 1.5365 2.3413 0.4644 6 7 0.4110 2.2622 1.1422 7 14 2.3086 4.0086 0.1277 8 1 2.4091 4.2205 -1.3387 9 1 1.4652 5.0746 0.7256 10 1 3.6656 4.0561 0.7288 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4417 13 1 1.5155 -1.7934 -1.9923 14 6 3.4229 -0.7313 -2.1529 15 6 4.0580 -1.6482 -3.2279 16 7 4.2032 -2.9586 -2.5683 17 16 5.2882 -4.1364 -2.9899 18 6 6.7617 -3.7709 -1.9970 19 8 4.6806 -5.3448 -2.5544 20 8 5.5442 -3.9002 -4.3676 21 6 3.2245 -3.0469 -1.4747 22 1 -0.3633 0.0919 1.0234 23 1 -0.3633 0.8405 -0.5915 24 1 -0.3633 -0.9324 -0.4323 25 1 -0.0174 3.0695 1.4671 26 1 1.6084 -2.0282 0.5147 27 1 3.1499 -1.1382 0.5144 28 1 4.1785 -0.3588 -1.4612 29 1 2.8779 0.0922 -2.6143 30 1 3.4005 -1.7299 -4.0934 31 1 5.0333 -1.2636 -3.5264 32 1 6.5060 -3.8132 -0.9382 33 1 7.5369 -4.5061 -2.2129 34 1 7.1274 -2.7738 -2.2428 35 1 3.7404 -3.2004 -0.5270 36 1 2.5336 -3.8699 -1.6580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:47 Heat of formation + Delta-G solvation = -66.971606 kcal Electronic energy + Delta-G solvation = -18619.485383 eV Core-core repulsion = 15651.830072 eV Total energy + Delta-G solvation = -2967.655311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70129 -38.16157 -37.10597 -36.98420 -33.64818 -31.62229 -30.28223 -30.20338 -27.86503 -26.77899 -23.30998 -23.04250 -20.92531 -19.85708 -18.71405 -18.56052 -17.54404 -17.00684 -16.78179 -16.16821 -15.38567 -15.05536 -14.91788 -14.59565 -14.27968 -13.99226 -13.97707 -13.77900 -13.41414 -13.20205 -13.11867 -13.10787 -12.79352 -12.58765 -12.48952 -12.16821 -12.11628 -11.98682 -11.91302 -11.62839 -11.54510 -11.26216 -10.53539 -9.86090 -8.67378 -7.73594 -5.20966 -0.69386 1.50660 1.53147 1.58580 1.68882 2.57262 2.97319 3.10442 3.40168 3.60481 3.82332 4.03026 4.11033 4.11997 4.25596 4.45998 4.61692 4.65627 4.75461 4.91275 4.93440 4.95207 5.00512 5.12088 5.22338 5.28047 5.39284 5.44977 5.49982 5.63560 5.74002 5.79066 6.41862 7.24047 7.97352 8.42098 9.29904 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.035305 B = 0.004976 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.896077 B = 5625.210525 C = 6031.654161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.244 4.244 4 H 0.082 0.918 5 C -0.060 4.060 6 N -0.944 5.944 7 Si 0.961 3.039 8 H -0.279 1.279 9 H -0.303 1.303 10 H -0.275 1.275 11 C 0.158 3.842 12 C -0.109 4.109 13 H 0.064 0.936 14 C -0.107 4.107 15 C 0.123 3.877 16 N -1.016 6.016 17 S 2.634 3.366 18 C -0.650 4.650 19 O -0.993 6.993 20 O -0.993 6.993 21 C 0.129 3.871 22 H 0.002 0.998 23 H 0.011 0.989 24 H 0.028 0.972 25 H 0.244 0.756 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 -10.828 -5.993 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.374 4.374 4 H 0.099 0.901 5 C -0.255 4.255 6 N -0.592 5.592 7 Si 0.790 3.210 8 H -0.205 1.205 9 H -0.229 1.229 10 H -0.200 1.200 11 C 0.032 3.968 12 C -0.132 4.132 13 H 0.083 0.917 14 C -0.146 4.146 15 C -0.002 4.002 16 N -0.854 5.854 17 S 2.732 3.268 18 C -0.804 4.804 19 O -0.984 6.984 20 O -0.984 6.984 21 C 0.003 3.997 22 H 0.020 0.980 23 H 0.030 0.970 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.101 0.899 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.669 -11.484 -6.584 17.647 hybrid contribution 0.090 1.544 0.459 1.613 sum 11.760 -9.940 -6.126 16.572 Atomic orbital electron populations 1.20505 0.83354 0.95637 0.97385 1.44095 1.01781 1.01873 1.86079 1.19549 0.98341 0.86187 1.33344 0.90053 1.25753 0.98793 1.01701 0.99209 1.70234 1.21213 1.27196 1.40560 0.85428 0.77642 0.80151 0.77767 1.20550 1.22941 1.20037 1.20883 0.95937 0.86737 0.93254 1.22762 0.97926 0.93497 0.98965 0.91715 1.22632 0.98097 0.96862 0.96991 1.22053 1.01702 0.81267 0.95132 1.58491 1.50049 1.31460 1.45405 1.04004 0.76269 0.71999 0.74523 1.30358 1.19488 1.13878 1.16691 1.93547 1.75687 1.45255 1.83934 1.93550 1.86494 1.85527 1.32840 1.21707 0.90819 0.97727 0.89414 0.97988 0.96973 0.95338 0.94722 0.93385 0.92874 0.90848 0.91592 0.92072 0.89057 0.83683 0.83412 0.83648 0.89914 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.48 8.98 127.77 1.15 9.63 16 2 N -0.62 -28.70 2.87 -726.94 -2.08 -30.79 16 3 C -0.24 -12.38 8.97 84.03 0.75 -11.62 16 4 H 0.08 3.86 6.69 -2.91 -0.02 3.84 16 5 C -0.06 -3.27 5.09 84.86 0.43 -2.84 16 6 N -0.94 -55.13 10.71 21.65 0.23 -54.90 16 7 Si 0.96 43.64 29.57 68.60 2.03 45.67 16 8 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 C 0.16 5.66 5.03 86.38 0.43 6.09 16 12 C -0.11 -3.25 3.20 -9.61 -0.03 -3.28 16 13 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 14 C -0.11 -3.04 5.21 31.98 0.17 -2.88 16 15 C 0.12 2.89 6.89 86.85 0.60 3.49 16 16 N -1.02 -23.02 3.62 -506.43 -1.83 -24.86 16 17 S 2.63 54.17 6.29 -56.49 -0.36 53.82 16 18 C -0.65 -6.92 10.99 113.37 1.25 -5.67 16 19 O -0.99 -27.26 17.60 -127.65 -2.25 -29.50 16 20 O -0.99 -26.98 17.60 -127.65 -2.25 -29.22 16 21 C 0.13 3.13 6.49 86.73 0.56 3.69 16 22 H 0.00 0.10 7.34 -2.39 -0.02 0.08 16 23 H 0.01 0.61 7.33 -2.38 -0.02 0.59 16 24 H 0.03 1.16 8.03 -2.38 -0.02 1.14 16 25 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 26 H 0.05 1.62 8.07 -2.39 -0.02 1.60 16 27 H 0.05 1.85 8.00 -2.39 -0.02 1.83 16 28 H 0.07 2.09 7.42 -2.39 -0.02 2.07 16 29 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.67 7.82 -2.39 -0.02 1.65 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -70.89 304.61 -0.15 -71.04 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.05 Total: 2.12 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.31 Total: -3.38 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.69 Total: -110.54 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -4.49 Total: -58.73 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.36 Total: 53.82 kcal Total: -70.89 -0.15 -71.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.068 kcal (2) G-P(sol) polarization free energy of solvation -70.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds