Wall clock time and date at job start Mon Mar 30 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99769 * 2 1 4 4 C 1.50700 * 109.47132 * 293.94987 * 3 2 1 5 5 H 1.07995 * 120.00159 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99818 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00135 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99767 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47214 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47100 * 119.99984 * 8 6 4 11 11 H 1.48498 * 109.47149 * 240.00186 * 8 6 4 12 12 C 1.46902 * 110.99900 * 123.94881 * 2 1 3 13 13 C 1.53003 * 109.46992 * 75.54287 * 12 2 1 14 14 H 1.09004 * 112.73639 * 314.27546 * 13 12 2 15 15 C 1.53495 * 113.52132 * 85.06982 * 13 12 2 16 16 C 1.53243 * 83.42917 * 140.68780 * 15 13 12 17 17 N 1.47068 * 88.08209 * 334.10157 * 16 15 13 18 18 S 1.65599 * 136.05751 * 207.19844 * 17 16 15 19 19 C 1.81400 * 104.45165 * 263.37134 * 18 17 16 20 20 O 1.42104 * 104.27514 * 19.44394 * 18 17 16 21 21 O 1.42099 * 104.27539 * 147.29564 * 18 17 16 22 22 H 1.09000 * 109.47467 * 291.01517 * 1 2 3 23 23 H 1.09006 * 109.46955 * 51.01551 * 1 2 3 24 24 H 1.09010 * 109.47191 * 171.01233 * 1 2 3 25 25 H 1.09005 * 109.47211 * 53.94972 * 3 2 1 26 26 H 1.09005 * 109.47241 * 173.94796 * 3 2 1 27 27 H 0.97003 * 119.99851 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47456 * 315.54838 * 12 2 1 29 29 H 1.08993 * 109.47421 * 195.54320 * 12 2 1 30 30 H 1.09000 * 114.20466 * 254.44437 * 15 13 12 31 31 H 1.09002 * 114.20580 * 27.07167 * 15 13 12 32 32 H 1.08999 * 113.38127 * 219.28981 * 16 15 13 33 33 H 1.08996 * 113.46852 * 88.93219 * 16 15 13 34 34 H 1.09000 * 109.46998 * 59.99716 * 19 18 17 35 35 H 1.08993 * 109.47065 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.46817 * 300.00273 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0276 3.3491 -1.5289 7 7 2.7127 4.0015 -0.6153 8 14 1.5827 4.1868 -3.1382 9 1 0.8136 3.2449 -3.9905 10 1 0.7560 5.3885 -2.8587 11 1 2.8241 4.5933 -3.8444 12 6 1.9954 -0.7659 1.1377 13 6 1.8419 -2.2626 0.8596 14 1 0.8573 -2.5197 0.4690 15 6 2.9979 -2.8554 0.0420 16 6 2.8251 -4.0465 0.9907 17 7 2.2676 -3.1133 1.9812 18 16 2.1688 -3.0464 3.6329 19 6 0.5207 -3.7010 4.0148 20 8 3.1772 -3.9420 4.0808 21 8 2.2360 -1.6589 3.9320 22 1 -0.3634 0.3685 0.9593 23 1 -0.3633 0.6466 -0.7989 24 1 -0.3634 -1.0151 -0.1606 25 1 1.5609 1.9274 0.8309 26 1 3.0797 1.3445 0.1084 27 1 2.9879 4.9175 -0.7777 28 1 1.4408 -0.5052 2.0391 29 1 3.0499 -0.5288 1.2786 30 1 2.7469 -3.0689 -0.9970 31 1 3.9439 -2.3263 0.1568 32 1 3.7698 -4.4940 1.2995 33 1 2.1052 -4.7836 0.6353 34 1 0.4405 -4.7226 3.6434 35 1 0.3678 -3.6932 5.0939 36 1 -0.2367 -3.0800 3.5363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260593200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:24 Heat of formation + Delta-G solvation = -51.707637 kcal Electronic energy + Delta-G solvation = -18486.392044 eV Core-core repulsion = 15519.398629 eV Total energy + Delta-G solvation = -2966.993415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57219 -38.19494 -37.77095 -37.01041 -34.63367 -30.49449 -30.31042 -29.35677 -28.71286 -26.56539 -24.03380 -22.28024 -21.79245 -19.62855 -18.59192 -18.37503 -17.32980 -17.20201 -16.66607 -16.17753 -16.10123 -15.60213 -14.78567 -14.61801 -14.45336 -14.03638 -14.00917 -13.86213 -13.76163 -13.20873 -13.13494 -13.07993 -12.90281 -12.78136 -12.54656 -12.42032 -12.20848 -12.10300 -11.78293 -11.61508 -11.51163 -11.08089 -10.61383 -9.94902 -9.01343 -8.18053 -6.29040 -0.72821 1.43910 1.44761 1.58296 1.59904 2.42742 2.93180 3.04926 3.14720 3.30949 3.72357 3.87086 4.00621 4.08065 4.10256 4.35413 4.53247 4.54574 4.76091 4.78159 4.80663 4.84181 4.88769 5.09070 5.16198 5.20010 5.22413 5.33197 5.39905 5.65342 5.71835 6.05894 6.32346 6.61653 6.88498 7.41088 8.93990 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.004618 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.567437 B = 6062.182833 C = 6244.483848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.533 5.533 3 C 0.206 3.794 4 C -0.517 4.517 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.941 5.941 8 Si 0.975 3.025 9 H -0.256 1.256 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.042 3.958 13 C 0.166 3.834 14 H 0.124 0.876 15 C -0.137 4.137 16 C 0.132 3.868 17 N -1.046 6.046 18 S 2.627 3.373 19 C -0.649 4.649 20 O -0.993 6.993 21 O -1.000 7.000 22 H 0.006 0.994 23 H 0.061 0.939 24 H 0.093 0.907 25 H -0.046 1.046 26 H -0.003 1.003 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -20.123 3.680 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.257 5.257 3 C 0.079 3.921 4 C -0.555 4.555 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.581 5.581 8 Si 0.800 3.200 9 H -0.180 1.180 10 H -0.207 1.207 11 H -0.206 1.206 12 C -0.087 4.087 13 C 0.060 3.940 14 H 0.141 0.859 15 C -0.177 4.177 16 C 0.008 3.992 17 N -0.886 5.886 18 S 2.727 3.273 19 C -0.803 4.803 20 O -0.984 6.984 21 O -0.991 6.991 22 H 0.025 0.975 23 H 0.080 0.920 24 H 0.112 0.888 25 H -0.028 1.028 26 H 0.015 0.985 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.139 0.861 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.481 -19.886 4.138 21.039 hybrid contribution -0.609 1.370 0.509 1.584 sum -6.091 -18.516 4.648 20.038 Atomic orbital electron populations 1.22395 0.87169 1.02482 0.99509 1.61956 1.08401 1.14685 1.40677 1.19415 0.93367 0.84200 0.95117 1.21510 1.34638 0.97366 1.02030 0.90924 1.26025 0.95025 0.98217 1.00912 1.70137 1.39646 1.11892 1.36474 0.85245 0.77982 0.78142 0.78672 1.17985 1.20715 1.20626 1.22439 0.99337 0.94940 0.92014 1.22247 1.00810 0.87590 0.83399 0.85895 1.23351 0.97788 0.96678 0.99879 1.22626 0.99504 0.92609 0.84458 1.60133 1.73541 1.34830 1.20053 1.04107 0.78337 0.73345 0.71543 1.30365 1.21746 1.14966 1.13175 1.93528 1.57157 1.67655 1.80054 1.93591 1.88056 1.34198 1.83233 0.97548 0.91982 0.88849 1.02816 0.98518 0.92803 0.95341 0.93668 0.87390 0.91125 0.90272 0.86108 0.82783 0.83944 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 9.27 127.69 1.18 2.36 16 2 N -0.53 -22.79 4.68 -927.02 -4.34 -27.13 16 3 C 0.21 11.40 4.70 85.56 0.40 11.80 16 4 C -0.52 -29.37 8.38 25.60 0.21 -29.16 16 5 H 0.07 3.93 7.17 -2.91 -0.02 3.91 16 6 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 7 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 8 Si 0.98 44.28 29.54 68.60 2.03 46.30 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.04 1.60 4.35 86.30 0.38 1.97 16 13 C 0.17 4.16 4.17 41.79 0.17 4.34 16 14 H 0.12 2.36 6.90 -2.38 -0.02 2.34 16 15 C -0.14 -2.99 8.01 30.84 0.25 -2.75 16 16 C 0.13 2.16 8.63 83.09 0.72 2.87 16 17 N -1.05 -23.27 3.98 -527.36 -2.10 -25.37 16 18 S 2.63 62.22 6.60 -56.49 -0.37 61.84 16 19 C -0.65 -7.70 10.99 113.37 1.25 -6.45 16 20 O -0.99 -29.02 18.03 -127.65 -2.30 -31.32 16 21 O -1.00 -34.48 16.10 -127.65 -2.05 -36.54 16 22 H 0.01 0.22 7.98 -2.39 -0.02 0.20 16 23 H 0.06 2.44 6.66 -2.38 -0.02 2.42 16 24 H 0.09 2.45 6.95 -2.38 -0.02 2.43 16 25 H -0.05 -2.82 8.12 -2.38 -0.02 -2.84 16 26 H 0.00 -0.20 7.83 -2.38 -0.02 -0.22 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.03 1.14 6.67 -2.39 -0.02 1.12 16 29 H 0.04 1.94 7.50 -2.39 -0.02 1.92 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -80.44 308.42 -2.78 -83.22 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.05 Total: 1.86 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.02 Total: -14.81 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -6.16 Total: -110.57 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -4.36 Total: -67.85 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 62.22 SS G_CDS: -0.37 Total: 61.84 kcal Total: -80.44 -2.78 -83.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.515 kcal (2) G-P(sol) polarization free energy of solvation -80.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds