Wall clock time and date at job start Mon Mar 30 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99771 * 2 1 4 4 C 1.50701 * 109.47195 * 293.95760 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27796 * 4 3 2 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 3 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.46897 * 111.00356 * 123.95278 * 2 1 3 13 13 C 1.53006 * 109.46996 * 66.04628 * 12 2 1 14 14 H 1.08994 * 112.74262 * 284.26102 * 13 12 2 15 15 C 1.53491 * 113.46895 * 153.43601 * 13 12 2 16 16 C 1.53491 * 83.34863 * 219.15717 * 15 13 12 17 17 N 1.47066 * 87.98487 * 26.06585 * 16 15 13 18 18 S 1.65608 * 136.05819 * 152.84551 * 17 16 15 19 19 C 1.81400 * 104.44611 * 270.05340 * 18 17 16 20 20 O 1.42096 * 104.27661 * 26.12309 * 18 17 16 21 21 O 1.42095 * 104.27592 * 153.98452 * 18 17 16 22 22 H 1.09002 * 109.47259 * 60.00262 * 1 2 3 23 23 H 1.09003 * 109.46525 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47311 * 299.99377 * 1 2 3 25 25 H 1.09000 * 109.47038 * 173.94903 * 3 2 1 26 26 H 1.09007 * 109.46566 * 53.95436 * 3 2 1 27 27 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.47347 * 186.04883 * 12 2 1 29 29 H 1.09001 * 109.47087 * 306.05170 * 12 2 1 30 30 H 1.09004 * 114.20410 * 332.74373 * 15 13 12 31 31 H 1.08995 * 114.20885 * 105.56664 * 15 13 12 32 32 H 1.09003 * 113.46782 * 271.28812 * 16 15 13 33 33 H 1.08994 * 113.47413 * 140.84716 * 16 15 13 34 34 H 1.08998 * 109.47319 * 59.99977 * 19 18 17 35 35 H 1.09001 * 109.46674 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47437 * 299.99517 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0320 3.3475 -1.5309 7 7 1.7237 3.9354 -2.6663 8 14 3.0051 4.2742 -0.2334 9 1 4.4573 4.0559 -0.4539 10 1 2.7024 5.7249 -0.3297 11 1 2.6292 3.7786 1.1151 12 6 1.9955 -0.7659 1.1375 13 6 1.6316 -2.2426 0.9703 14 1 0.5852 -2.4470 1.1969 15 6 2.6080 -3.1962 1.6726 16 6 2.3965 -4.0520 0.4161 17 7 2.0759 -2.8139 -0.3100 18 16 2.1732 -2.2923 -1.8787 19 6 3.8255 -1.5548 -2.0087 20 8 2.0968 -3.4835 -2.6495 21 8 1.1707 -1.2901 -1.9776 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 3.0797 1.3445 0.1083 26 1 1.5610 1.9273 0.8310 27 1 2.0014 4.8503 -2.8298 28 1 3.0797 -0.6610 1.1756 29 1 1.5611 -0.3872 2.0628 30 1 3.6185 -2.8018 1.7799 31 1 2.2175 -3.6415 2.5876 32 1 1.5541 -4.7391 0.4956 33 1 3.3061 -4.5385 0.0641 34 1 4.5789 -2.3095 -1.7833 35 1 3.9774 -1.1801 -3.0209 36 1 3.9126 -0.7314 -1.3000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260593204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:27 Heat of formation + Delta-G solvation = -4.971211 kcal Electronic energy + Delta-G solvation = -19495.409429 eV Core-core repulsion = 16530.442658 eV Total energy + Delta-G solvation = -2964.966772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55324 -36.62339 -35.92195 -35.11766 -32.38831 -29.19900 -28.93939 -28.31724 -27.13693 -24.87795 -22.29324 -21.03798 -20.07999 -18.21118 -17.13174 -16.78789 -15.90468 -15.56975 -14.96988 -14.51594 -14.43468 -14.10268 -13.52337 -13.36939 -12.94564 -12.63691 -12.50220 -12.26440 -12.23235 -11.96466 -11.58579 -11.38987 -11.13729 -11.08699 -10.80443 -10.69721 -10.55403 -10.49163 -10.25697 -10.15136 -9.73182 -9.15651 -8.80288 -8.51089 -7.24223 -5.97180 -3.93147 0.84627 3.08711 3.28051 3.36784 3.37633 4.36434 4.45115 4.47685 4.64728 4.69704 4.94726 5.16278 5.25785 5.32193 5.39253 5.40546 5.45331 5.52392 5.70728 5.86444 5.99280 6.19241 6.25084 6.27752 6.43110 6.43644 6.73409 6.79874 6.98712 7.21973 7.65891 7.97320 8.16661 8.76106 9.24318 9.65202 11.16047 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.007659 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.904374 B = 3654.789613 C = 4092.951594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.519 5.519 3 C 0.160 3.840 4 C -0.500 4.500 5 H 0.094 0.906 6 C 0.065 3.935 7 N -0.902 5.902 8 Si 0.869 3.131 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.168 3.832 14 H 0.087 0.913 15 C -0.153 4.153 16 C 0.126 3.874 17 N -1.030 6.030 18 S 2.632 3.368 19 C -0.659 4.659 20 O -0.987 6.987 21 O -0.890 6.890 22 H 0.082 0.918 23 H 0.045 0.955 24 H 0.000 1.000 25 H 0.017 0.983 26 H -0.013 1.013 27 H 0.261 0.739 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -14.602 9.340 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.243 5.243 3 C 0.034 3.966 4 C -0.539 4.539 5 H 0.111 0.889 6 C -0.136 4.136 7 N -0.542 5.542 8 Si 0.697 3.303 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.062 3.938 14 H 0.105 0.895 15 C -0.193 4.193 16 C 0.000 4.000 17 N -0.868 5.868 18 S 2.727 3.273 19 C -0.809 4.809 20 O -0.978 6.978 21 O -0.880 6.880 22 H 0.101 0.899 23 H 0.063 0.937 24 H 0.018 0.982 25 H 0.035 0.965 26 H 0.005 0.995 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.154 -14.642 7.880 16.924 hybrid contribution 1.054 1.314 1.572 2.304 sum 4.208 -13.328 9.452 16.873 Atomic orbital electron populations 1.22004 0.87117 0.99343 1.00145 1.62076 1.08908 1.16194 1.37120 1.20211 0.94310 0.84554 0.97544 1.21194 1.34784 0.96990 1.00898 0.88851 1.24929 0.96125 0.97438 0.95096 1.69901 1.47303 1.13270 1.23701 0.86972 0.80806 0.79541 0.83029 1.20449 1.21327 1.19407 1.22647 1.00499 0.92830 0.94503 1.22066 0.97930 0.93326 0.80528 0.89533 1.23642 1.00692 0.97815 0.97165 1.22262 1.00164 0.87843 0.89709 1.60266 1.79455 1.23525 1.23513 1.04268 0.77649 0.74172 0.71256 1.30442 1.25125 1.13747 1.11583 1.93534 1.87425 1.48430 1.68426 1.93757 1.52301 1.59237 1.82677 0.89895 0.93667 0.98191 0.96477 0.99488 0.92868 0.90950 0.94291 0.88934 0.90184 0.90417 0.91144 0.87422 0.86031 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.24 7.44 60.07 0.45 1.69 16 2 N -0.52 -10.35 1.97 -244.36 -0.48 -10.83 16 3 C 0.16 3.77 3.79 -4.97 -0.02 3.76 16 4 C -0.50 -14.15 9.07 -34.44 -0.31 -14.46 16 5 H 0.09 2.94 7.35 -52.49 -0.39 2.56 16 6 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 8 Si 0.87 21.37 27.46 -169.99 -4.67 16.71 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.37 6.55 56.52 0.37 -6.00 16 12 C 0.02 0.38 5.08 -3.82 -0.02 0.36 16 13 C 0.17 2.07 3.47 -72.39 -0.25 1.82 16 14 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 15 C -0.15 -1.31 8.02 -26.22 -0.21 -1.52 16 16 C 0.13 1.24 8.68 -8.51 -0.07 1.17 16 17 N -1.03 -13.96 3.93 -117.90 -0.46 -14.42 16 18 S 2.63 43.76 6.13 -107.50 -0.66 43.10 16 19 C -0.66 -9.57 10.99 101.05 1.11 -8.46 16 20 O -0.99 -18.51 18.07 -57.54 -1.04 -19.55 16 21 O -0.89 -18.46 13.44 -57.54 -0.77 -19.23 16 22 H 0.08 1.93 6.84 -51.93 -0.36 1.58 16 23 H 0.04 0.80 6.54 -51.93 -0.34 0.46 16 24 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 25 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 26 H -0.01 -0.30 7.19 -51.93 -0.37 -0.68 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 28 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 29 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.09 0.74 7.94 -51.93 -0.41 0.33 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.12 1.74 8.14 -51.92 -0.42 1.31 16 36 H 0.14 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -34.98 299.45 -7.80 -42.78 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.58 Total: -2.11 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 0.57 Total: -13.87 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.17 Total: -52.33 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.81 Total: -38.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 43.76 SS G_CDS: -0.66 Total: 43.10 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.98 -7.80 -42.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.807 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds