Wall clock time and date at job start Mon Mar 30 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99771 * 2 1 4 4 C 1.50701 * 109.47195 * 293.95760 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27796 * 4 3 2 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 3 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.46897 * 111.00356 * 123.95278 * 2 1 3 13 13 C 1.53006 * 109.46996 * 66.04628 * 12 2 1 14 14 H 1.08994 * 112.74262 * 284.26102 * 13 12 2 15 15 C 1.53491 * 113.46895 * 153.43601 * 13 12 2 16 16 C 1.53491 * 83.34863 * 219.15717 * 15 13 12 17 17 N 1.47066 * 87.98487 * 26.06585 * 16 15 13 18 18 S 1.65608 * 136.05819 * 152.84551 * 17 16 15 19 19 C 1.81400 * 104.44611 * 270.05340 * 18 17 16 20 20 O 1.42096 * 104.27661 * 26.12309 * 18 17 16 21 21 O 1.42095 * 104.27592 * 153.98452 * 18 17 16 22 22 H 1.09002 * 109.47259 * 60.00262 * 1 2 3 23 23 H 1.09003 * 109.46525 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47311 * 299.99377 * 1 2 3 25 25 H 1.09000 * 109.47038 * 173.94903 * 3 2 1 26 26 H 1.09007 * 109.46566 * 53.95436 * 3 2 1 27 27 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.47347 * 186.04883 * 12 2 1 29 29 H 1.09001 * 109.47087 * 306.05170 * 12 2 1 30 30 H 1.09004 * 114.20410 * 332.74373 * 15 13 12 31 31 H 1.08995 * 114.20885 * 105.56664 * 15 13 12 32 32 H 1.09003 * 113.46782 * 271.28812 * 16 15 13 33 33 H 1.08994 * 113.47413 * 140.84716 * 16 15 13 34 34 H 1.08998 * 109.47319 * 59.99977 * 19 18 17 35 35 H 1.09001 * 109.46674 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47437 * 299.99517 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0320 3.3475 -1.5309 7 7 1.7237 3.9354 -2.6663 8 14 3.0051 4.2742 -0.2334 9 1 4.4573 4.0559 -0.4539 10 1 2.7024 5.7249 -0.3297 11 1 2.6292 3.7786 1.1151 12 6 1.9955 -0.7659 1.1375 13 6 1.6316 -2.2426 0.9703 14 1 0.5852 -2.4470 1.1969 15 6 2.6080 -3.1962 1.6726 16 6 2.3965 -4.0520 0.4161 17 7 2.0759 -2.8139 -0.3100 18 16 2.1732 -2.2923 -1.8787 19 6 3.8255 -1.5548 -2.0087 20 8 2.0968 -3.4835 -2.6495 21 8 1.1707 -1.2901 -1.9776 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 3.0797 1.3445 0.1083 26 1 1.5610 1.9273 0.8310 27 1 2.0014 4.8503 -2.8298 28 1 3.0797 -0.6610 1.1756 29 1 1.5611 -0.3872 2.0628 30 1 3.6185 -2.8018 1.7799 31 1 2.2175 -3.6415 2.5876 32 1 1.5541 -4.7391 0.4956 33 1 3.3061 -4.5385 0.0641 34 1 4.5789 -2.3095 -1.7833 35 1 3.9774 -1.1801 -3.0209 36 1 3.9126 -0.7314 -1.3000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260593204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:27 Heat of formation + Delta-G solvation = -32.341552 kcal Electronic energy + Delta-G solvation = -19496.596297 eV Core-core repulsion = 16530.442658 eV Total energy + Delta-G solvation = -2966.153639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51404 -38.05245 -37.41392 -36.55059 -34.52261 -30.69580 -30.15086 -29.47828 -28.58007 -26.43994 -23.66990 -22.01590 -21.68419 -19.37569 -18.90365 -18.25987 -17.13398 -16.86505 -16.42726 -16.07469 -15.92586 -15.68562 -14.74067 -14.55080 -14.46660 -14.09875 -13.80491 -13.72515 -13.46732 -13.24025 -12.89021 -12.85036 -12.77979 -12.44634 -12.37989 -12.23889 -11.99985 -11.89718 -11.63350 -11.48451 -11.44982 -11.05924 -10.71616 -9.79293 -8.78943 -8.19270 -6.21089 -0.41074 1.34955 1.37979 1.48041 1.95768 2.38842 3.12663 3.20968 3.30954 3.44776 3.77318 3.97563 4.10634 4.23308 4.26772 4.38080 4.60260 4.60650 4.73705 4.77436 4.84573 4.93756 5.04646 5.07185 5.15123 5.16717 5.34785 5.47219 5.49139 5.62005 5.82605 6.13263 6.51061 6.82460 6.93899 7.41769 8.97989 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.007659 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.904374 B = 3654.789613 C = 4092.951594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.529 5.529 3 C 0.169 3.831 4 C -0.502 4.502 5 H 0.041 0.959 6 C -0.001 4.001 7 N -0.956 5.956 8 Si 0.946 3.054 9 H -0.263 1.263 10 H -0.289 1.289 11 H -0.248 1.248 12 C 0.020 3.980 13 C 0.160 3.840 14 H 0.091 0.909 15 C -0.124 4.124 16 C 0.119 3.881 17 N -1.039 6.039 18 S 2.636 3.364 19 C -0.649 4.649 20 O -1.018 7.018 21 O -0.945 6.945 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.009 0.991 25 H 0.033 0.967 26 H -0.014 1.014 27 H 0.263 0.737 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.118 0.882 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -16.006 12.771 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.253 5.253 3 C 0.042 3.958 4 C -0.541 4.541 5 H 0.059 0.941 6 C -0.197 4.197 7 N -0.598 5.598 8 Si 0.769 3.231 9 H -0.188 1.188 10 H -0.215 1.215 11 H -0.172 1.172 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.109 0.891 15 C -0.164 4.164 16 C -0.006 4.006 17 N -0.879 5.879 18 S 2.733 3.267 19 C -0.801 4.801 20 O -1.008 7.008 21 O -0.935 6.935 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.003 0.997 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.162 0.838 35 H 0.137 0.863 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.257 -16.097 11.326 20.372 hybrid contribution 0.353 1.638 0.476 1.742 sum 5.610 -14.459 11.802 19.489 Atomic orbital electron populations 1.21801 0.87694 0.99913 0.98106 1.61885 1.08538 1.14389 1.40526 1.19985 0.95101 0.86319 0.94418 1.21394 1.33578 0.97177 1.01927 0.94082 1.25912 0.97575 0.98591 0.97605 1.70093 1.49398 1.13823 1.26473 0.85747 0.79464 0.77461 0.80408 1.18829 1.21466 1.17171 1.22852 1.01266 0.93731 0.92992 1.22319 0.99525 0.92192 0.80587 0.89121 1.23573 1.00184 0.95253 0.97386 1.22610 1.01382 0.87023 0.89586 1.60027 1.79714 1.25584 1.22586 1.03711 0.77958 0.73103 0.71891 1.30307 1.24198 1.14211 1.11335 1.93484 1.88093 1.49224 1.70033 1.93709 1.55108 1.60660 1.84042 0.94753 0.91764 0.97261 0.94879 0.99678 0.92840 0.89461 0.92880 0.87662 0.87025 0.89463 0.89528 0.83754 0.86296 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.98 7.44 127.69 0.95 3.93 16 2 N -0.53 -20.83 1.97 -927.03 -1.82 -22.65 16 3 C 0.17 7.85 3.79 85.56 0.32 8.17 16 4 C -0.50 -29.42 9.07 25.60 0.23 -29.19 16 5 H 0.04 2.78 7.35 -2.91 -0.02 2.76 16 6 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 7 N -0.96 -61.39 13.96 21.45 0.30 -61.09 16 8 Si 0.95 43.92 27.46 68.60 1.88 45.80 16 9 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.25 -10.59 6.55 99.48 0.65 -9.94 16 12 C 0.02 0.55 5.08 86.31 0.44 0.99 16 13 C 0.16 3.41 3.47 41.79 0.15 3.56 16 14 H 0.09 1.86 7.42 -2.39 -0.02 1.84 16 15 C -0.12 -1.48 8.02 30.92 0.25 -1.23 16 16 C 0.12 1.88 8.68 83.18 0.72 2.60 16 17 N -1.04 -25.83 3.93 -526.94 -2.07 -27.90 16 18 S 2.64 87.64 6.13 -56.49 -0.35 87.29 16 19 C -0.65 -18.01 10.99 113.37 1.25 -16.77 16 20 O -1.02 -38.34 18.07 -127.65 -2.31 -40.64 16 21 O -0.95 -41.14 13.44 -127.65 -1.72 -42.85 16 22 H 0.03 1.70 6.84 -2.39 -0.02 1.69 16 23 H 0.06 2.31 6.54 -2.39 -0.02 2.29 16 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.03 1.44 7.35 -2.39 -0.02 1.42 16 26 H -0.01 -0.67 7.19 -2.38 -0.02 -0.69 16 27 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.09 2.10 7.67 -2.39 -0.02 2.09 16 29 H 0.05 1.32 8.12 -2.39 -0.02 1.30 16 30 H 0.10 1.06 7.94 -2.38 -0.02 1.04 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 Total: -1.00 -80.62 299.45 -0.31 -80.93 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.00 Total: 8.66 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.77 Total: -27.54 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.59 Total: -111.65 kcal Atomic # 8 Polarization: -79.48 SS G_CDS: -4.02 Total: -83.50 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Atomic # 16 Polarization: 87.64 SS G_CDS: -0.35 Total: 87.29 kcal Total: -80.62 -0.31 -80.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.587 kcal (2) G-P(sol) polarization free energy of solvation -80.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds