Wall clock time and date at job start Mon Mar 30 2020 04:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46168 * 2 1 4 4 C 1.53042 * 109.46170 * 240.02702 * 2 1 3 5 5 C 1.53190 * 109.34244 * 178.61246 * 4 2 1 6 6 N 1.47000 * 108.73616 * 54.62155 * 5 4 2 7 7 S 1.65598 * 120.61159 * 126.39262 * 6 5 4 8 8 O 1.42101 * 106.40086 * 213.93652 * 7 6 5 9 9 O 1.42104 * 106.40284 * 346.85094 * 7 6 5 10 10 C 1.76198 * 107.21978 * 100.39469 * 7 6 5 11 11 H 1.07999 * 120.00109 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99573 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00594 * 359.97438 * 12 10 7 14 14 Si 1.86808 * 119.99512 * 180.02562 * 12 10 7 15 15 H 1.48492 * 109.47194 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47060 * 119.99839 * 14 12 10 17 17 H 1.48504 * 109.46557 * 239.99869 * 14 12 10 18 18 C 1.46927 * 118.75462 * 306.40931 * 6 5 4 19 19 H 1.09000 * 109.58490 * 293.82156 * 18 6 5 20 20 C 1.53002 * 109.58256 * 173.39545 * 18 6 5 21 21 N 1.46903 * 109.47032 * 60.36449 * 20 18 6 22 22 C 1.53044 * 109.45095 * 119.96723 * 2 1 3 23 23 H 1.08993 * 109.47051 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46763 * 299.97707 * 1 2 3 25 25 H 1.09001 * 109.46762 * 59.96868 * 1 2 3 26 26 H 1.08998 * 109.50009 * 298.58127 * 4 2 1 27 27 H 1.09004 * 109.49843 * 58.64610 * 4 2 1 28 28 H 1.09003 * 109.58958 * 174.44326 * 5 4 2 29 29 H 1.09009 * 109.58743 * 294.86443 * 5 4 2 30 30 H 0.96995 * 120.00536 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.46854 * 180.36215 * 20 18 6 32 32 H 1.08993 * 109.47341 * 300.36216 * 20 18 6 33 33 H 1.00895 * 111.00169 * 56.04094 * 21 20 18 34 34 H 1.00900 * 110.99893 * 179.97438 * 21 20 18 35 35 H 1.09004 * 109.49520 * 301.33187 * 22 2 1 36 36 H 1.09001 * 109.49399 * 61.39081 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6891 -1.2648 6 7 4.0676 -1.2494 0.0004 7 16 5.1653 -2.4893 0.0005 8 8 4.8615 -3.2940 1.1315 9 8 5.1991 -2.9954 -1.3269 10 6 6.7505 -1.7825 0.3040 11 1 6.8480 -0.7165 0.4473 12 6 7.8664 -2.5905 0.3596 13 7 7.7475 -3.8888 0.1866 14 14 9.5469 -1.8412 0.6822 15 1 9.4111 -0.3711 0.8413 16 1 10.1184 -2.4232 1.9230 17 1 10.4470 -2.1338 -0.4622 18 6 3.5711 -0.6889 1.2645 19 1 3.9142 0.3405 1.3676 20 6 4.0906 -1.5256 2.4355 21 7 5.5594 -1.5001 2.4419 22 6 2.0396 -0.7208 1.2502 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5143 -0.8897 26 1 1.6977 -1.7557 -1.2383 27 1 1.6570 -0.2212 -2.1399 28 1 3.9412 -1.2849 -2.0993 29 1 3.9145 0.3405 -1.3680 30 1 8.5324 -4.4573 0.2261 31 1 3.7159 -1.1120 3.3718 32 1 3.7455 -2.5539 2.3286 33 1 5.9044 -0.5525 2.4751 34 1 5.9271 -2.0456 3.2069 35 1 1.6569 -0.2207 2.1399 36 1 1.6968 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300039270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:32 Heat of formation + Delta-G solvation = -69.768931 kcal Electronic energy + Delta-G solvation = -19836.963987 eV Core-core repulsion = 16869.187376 eV Total energy + Delta-G solvation = -2967.776612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.59953 -35.67886 -34.01780 -33.47698 -32.83185 -32.27112 -30.14586 -27.37725 -25.75246 -24.19373 -22.55309 -20.79171 -19.70526 -18.42106 -16.87905 -15.96699 -15.42257 -14.91249 -14.74483 -14.18908 -14.01350 -13.98829 -13.38968 -13.13202 -13.07165 -12.89300 -12.07904 -11.85749 -11.66690 -11.58016 -11.44242 -11.06773 -10.91175 -10.67380 -10.63660 -10.43049 -10.30444 -10.03748 -9.92373 -9.78544 -9.00389 -8.81431 -8.52545 -7.92377 -7.51920 -6.33534 -4.66219 2.65800 3.19890 3.28659 3.34556 4.29272 4.68149 4.87321 4.98190 5.00361 5.16313 5.40992 5.56681 5.67646 5.71052 5.74994 5.85629 5.92641 5.97462 6.02802 6.08309 6.17181 6.24465 6.28189 6.37880 6.41900 6.47728 6.65972 6.77748 7.01509 7.22452 7.67664 7.98672 8.10340 8.36704 8.45313 9.26949 10.61657 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034098 B = 0.007946 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.957234 B = 3522.804128 C = 3753.992590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.128 4.128 5 C 0.119 3.881 6 N -1.004 6.004 7 S 2.741 3.259 8 O -0.994 6.994 9 O -1.028 7.028 10 C -0.942 4.942 11 H 0.092 0.908 12 C 0.129 3.871 13 N -0.865 5.865 14 Si 0.908 3.092 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.168 3.832 19 H 0.055 0.945 20 C 0.022 3.978 21 N -0.806 5.806 22 C -0.122 4.122 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.280 0.720 31 H 0.013 0.987 32 H 0.126 0.874 33 H 0.323 0.677 34 H 0.343 0.657 35 H 0.063 0.937 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 8.753 2.506 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.839 5.839 7 S 2.844 3.156 8 O -0.984 6.984 9 O -1.019 7.019 10 C -1.077 5.077 11 H 0.110 0.890 12 C -0.084 4.084 13 N -0.498 5.498 14 Si 0.734 3.266 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.205 1.205 18 C 0.060 3.940 19 H 0.073 0.927 20 C -0.109 4.109 21 N -0.337 5.337 22 C -0.162 4.162 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.823 7.305 1.630 12.349 hybrid contribution 1.280 1.494 1.336 2.378 sum -8.542 8.799 2.966 12.617 Atomic orbital electron populations 1.21834 0.95664 1.01651 1.01112 1.21059 0.94867 0.99418 0.95421 0.91453 1.21966 0.96643 1.00929 0.97133 1.21238 0.93065 0.98997 0.87420 1.58210 1.61046 1.56102 1.08556 0.99732 0.73564 0.70981 0.71350 1.93200 1.85174 1.67864 1.52114 1.93304 1.88358 1.78432 1.41773 1.30258 1.13402 1.04076 1.59964 0.88956 1.24548 0.99825 0.93814 0.90244 1.69911 1.32249 1.03870 1.43752 0.86362 0.82374 0.79787 0.78070 1.19234 1.20407 1.20478 1.20728 0.92477 0.96710 0.84085 0.92715 1.22782 0.90728 1.03576 0.93842 1.59403 1.05067 1.16015 1.53228 1.21963 0.95868 1.01200 0.97127 0.92768 0.93042 0.92970 0.91739 0.91645 0.88831 0.92882 0.90942 0.96951 0.85597 0.86419 0.84240 0.91842 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.09 -1.14 2.68 -90.58 -0.24 -1.38 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.83 5.36 -26.61 -0.14 -1.98 16 5 C 0.12 2.11 6.51 -3.67 -0.02 2.08 16 6 N -1.00 -20.35 3.29 -106.42 -0.35 -20.70 16 7 S 2.74 71.95 4.38 -107.50 -0.47 71.48 16 8 O -0.99 -27.22 12.61 -57.17 -0.72 -27.95 16 9 O -1.03 -30.70 16.40 -57.17 -0.94 -31.64 16 10 C -0.94 -25.19 6.91 30.60 0.21 -24.98 16 11 H 0.09 2.31 7.47 -52.49 -0.39 1.92 16 12 C 0.13 3.58 5.46 -17.82 -0.10 3.48 16 13 N -0.86 -25.73 13.19 55.43 0.73 -25.00 16 14 Si 0.91 20.90 29.54 -169.99 -5.02 15.87 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.17 2.85 3.13 -67.60 -0.21 2.64 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 C 0.02 0.41 5.39 -3.82 -0.02 0.38 16 21 N -0.81 -15.91 3.99 -10.37 -0.04 -15.95 16 22 C -0.12 -1.73 4.65 -26.61 -0.12 -1.85 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.82 6.72 -51.93 -0.35 1.47 16 29 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.28 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.13 2.64 5.75 -51.99 -0.30 2.34 16 33 H 0.32 5.69 8.62 -39.29 -0.34 5.36 16 34 H 0.34 6.61 9.08 -39.29 -0.36 6.26 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -33.55 289.52 -8.28 -41.83 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.52 Total: 10.48 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -0.31 Total: -22.79 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.34 Total: -61.66 kcal Atomic # 8 Polarization: -57.93 SS G_CDS: -1.66 Total: -59.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 71.95 SS G_CDS: -0.47 Total: 71.48 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.55 -8.28 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.937 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds