Wall clock time and date at job start Mon Mar 30 2020 04:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46168 * 2 1 4 4 C 1.53042 * 109.46170 * 240.02702 * 2 1 3 5 5 C 1.53190 * 109.34244 * 178.61246 * 4 2 1 6 6 N 1.47000 * 108.73616 * 54.62155 * 5 4 2 7 7 S 1.65598 * 120.61159 * 126.39262 * 6 5 4 8 8 O 1.42101 * 106.40086 * 213.93652 * 7 6 5 9 9 O 1.42104 * 106.40284 * 346.85094 * 7 6 5 10 10 C 1.76198 * 107.21978 * 100.39469 * 7 6 5 11 11 H 1.07999 * 120.00109 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99573 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00594 * 359.97438 * 12 10 7 14 14 Si 1.86808 * 119.99512 * 180.02562 * 12 10 7 15 15 H 1.48492 * 109.47194 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47060 * 119.99839 * 14 12 10 17 17 H 1.48504 * 109.46557 * 239.99869 * 14 12 10 18 18 C 1.46927 * 118.75462 * 306.40931 * 6 5 4 19 19 H 1.09000 * 109.58490 * 293.82156 * 18 6 5 20 20 C 1.53002 * 109.58256 * 173.39545 * 18 6 5 21 21 N 1.46903 * 109.47032 * 60.36449 * 20 18 6 22 22 C 1.53044 * 109.45095 * 119.96723 * 2 1 3 23 23 H 1.08993 * 109.47051 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46763 * 299.97707 * 1 2 3 25 25 H 1.09001 * 109.46762 * 59.96868 * 1 2 3 26 26 H 1.08998 * 109.50009 * 298.58127 * 4 2 1 27 27 H 1.09004 * 109.49843 * 58.64610 * 4 2 1 28 28 H 1.09003 * 109.58958 * 174.44326 * 5 4 2 29 29 H 1.09009 * 109.58743 * 294.86443 * 5 4 2 30 30 H 0.96995 * 120.00536 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.46854 * 180.36215 * 20 18 6 32 32 H 1.08993 * 109.47341 * 300.36216 * 20 18 6 33 33 H 1.00895 * 111.00169 * 56.04094 * 21 20 18 34 34 H 1.00900 * 110.99893 * 179.97438 * 21 20 18 35 35 H 1.09004 * 109.49520 * 301.33187 * 22 2 1 36 36 H 1.09001 * 109.49399 * 61.39081 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6891 -1.2648 6 7 4.0676 -1.2494 0.0004 7 16 5.1653 -2.4893 0.0005 8 8 4.8615 -3.2940 1.1315 9 8 5.1991 -2.9954 -1.3269 10 6 6.7505 -1.7825 0.3040 11 1 6.8480 -0.7165 0.4473 12 6 7.8664 -2.5905 0.3596 13 7 7.7475 -3.8888 0.1866 14 14 9.5469 -1.8412 0.6822 15 1 9.4111 -0.3711 0.8413 16 1 10.1184 -2.4232 1.9230 17 1 10.4470 -2.1338 -0.4622 18 6 3.5711 -0.6889 1.2645 19 1 3.9142 0.3405 1.3676 20 6 4.0906 -1.5256 2.4355 21 7 5.5594 -1.5001 2.4419 22 6 2.0396 -0.7208 1.2502 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5143 -0.8897 26 1 1.6977 -1.7557 -1.2383 27 1 1.6570 -0.2212 -2.1399 28 1 3.9412 -1.2849 -2.0993 29 1 3.9145 0.3405 -1.3680 30 1 8.5324 -4.4573 0.2261 31 1 3.7159 -1.1120 3.3718 32 1 3.7455 -2.5539 2.3286 33 1 5.9044 -0.5525 2.4751 34 1 5.9271 -2.0456 3.2069 35 1 1.6569 -0.2207 2.1399 36 1 1.6968 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300039270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:32 Heat of formation + Delta-G solvation = -96.005844 kcal Electronic energy + Delta-G solvation = -19838.101705 eV Core-core repulsion = 16869.187376 eV Total energy + Delta-G solvation = -2968.914330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89209 -37.54978 -35.88317 -35.24540 -34.85503 -33.77812 -31.49201 -28.56162 -27.81484 -25.51968 -23.82971 -22.23195 -20.84156 -20.40968 -18.70377 -17.85729 -17.04377 -16.62076 -16.27788 -15.87461 -15.30562 -15.28586 -14.96197 -14.86933 -14.46020 -14.20404 -13.72275 -13.51880 -13.00707 -12.90396 -12.84010 -12.70908 -12.54473 -12.22733 -12.20445 -12.07349 -11.99556 -11.66044 -11.29921 -11.17750 -11.00409 -10.68932 -10.47581 -9.51920 -9.05519 -8.39418 -6.77242 0.72959 1.40571 1.43161 1.56955 2.38534 2.91948 3.06678 3.70632 3.92970 3.94863 4.14176 4.27729 4.33002 4.38757 4.51108 4.59435 4.74572 4.79119 4.83183 4.88872 4.94031 5.01407 5.07471 5.12237 5.19603 5.31549 5.38200 5.53476 5.56507 5.65307 5.70685 6.29927 6.32140 6.64571 7.03109 7.16271 8.56325 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034098 B = 0.007946 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.957234 B = 3522.804128 C = 3753.992590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 H 0.084 0.916 4 C -0.125 4.125 5 C 0.109 3.891 6 N -1.004 6.004 7 S 2.740 3.260 8 O -1.016 7.016 9 O -1.077 7.077 10 C -0.942 4.942 11 H 0.107 0.893 12 C 0.069 3.931 13 N -0.917 5.917 14 Si 0.977 3.023 15 H -0.249 1.249 16 H -0.270 1.270 17 H -0.279 1.279 18 C 0.162 3.838 19 H 0.079 0.921 20 C 0.024 3.976 21 N -0.829 5.829 22 C -0.120 4.120 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.284 0.716 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.335 0.665 34 H 0.342 0.658 35 H 0.094 0.906 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 11.792 3.347 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.016 4.016 6 N -0.842 5.842 7 S 2.844 3.156 8 O -1.006 7.006 9 O -1.067 7.067 10 C -1.077 5.077 11 H 0.125 0.875 12 C -0.138 4.138 13 N -0.553 5.553 14 Si 0.799 3.201 15 H -0.173 1.173 16 H -0.195 1.195 17 H -0.204 1.204 18 C 0.055 3.945 19 H 0.097 0.903 20 C -0.108 4.108 21 N -0.362 5.362 22 C -0.159 4.159 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.590 10.358 2.473 15.018 hybrid contribution 1.424 0.581 1.084 1.882 sum -9.165 10.939 3.556 14.708 Atomic orbital electron populations 1.21786 0.93677 1.01703 1.02617 1.21069 0.96449 0.99537 0.93340 0.89805 1.21973 0.93996 1.00703 0.99708 1.21485 0.95483 0.99409 0.85266 1.57729 1.60161 1.55362 1.10921 0.99382 0.74250 0.71896 0.70053 1.93205 1.85613 1.69592 1.52194 1.93239 1.89187 1.80241 1.44058 1.30485 1.13799 1.04688 1.58730 0.87463 1.25591 1.04342 0.94032 0.89881 1.70038 1.33618 1.05727 1.45920 0.85306 0.77004 0.79801 0.78034 1.17261 1.19537 1.20426 1.21063 0.94460 0.97117 0.81826 0.90346 1.22666 0.89867 1.02154 0.96120 1.59220 1.06400 1.16898 1.53653 1.21981 0.93525 1.00947 0.99460 0.93491 0.91459 0.91604 0.93570 0.88812 0.91674 0.90361 0.90686 0.93297 0.89096 0.85104 0.84434 0.88751 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.19 71.98 0.66 -1.76 16 2 C -0.09 -1.88 2.68 -10.77 -0.03 -1.91 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -3.35 5.36 30.67 0.16 -3.18 16 5 C 0.11 3.76 6.51 86.35 0.56 4.32 16 6 N -1.00 -40.20 3.29 -490.59 -1.61 -41.81 16 7 S 2.74 147.53 4.38 -56.49 -0.25 147.28 16 8 O -1.02 -57.70 12.61 -128.00 -1.61 -59.31 16 9 O -1.08 -67.16 16.40 -128.00 -2.10 -69.26 16 10 C -0.94 -50.46 6.91 67.74 0.47 -50.00 16 11 H 0.11 5.23 7.47 -2.91 -0.02 5.21 16 12 C 0.07 3.87 5.46 84.66 0.46 4.33 16 13 N -0.92 -56.13 13.19 21.45 0.28 -55.85 16 14 Si 0.98 42.52 29.54 68.60 2.03 44.55 16 15 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 18 C 0.16 5.15 3.13 44.97 0.14 5.29 16 19 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 20 C 0.02 0.83 5.39 86.30 0.46 1.29 16 21 N -0.83 -32.19 3.99 -186.72 -0.75 -32.94 16 22 C -0.12 -3.05 4.65 30.67 0.14 -2.91 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 2.60 6.72 -2.39 -0.02 2.58 16 29 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 3.88 5.75 -3.32 -0.02 3.86 16 33 H 0.34 11.23 8.62 -89.70 -0.77 10.46 16 34 H 0.34 13.18 9.08 -89.69 -0.81 12.37 16 35 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -75.14 289.52 -1.48 -76.62 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.51 Total: 35.24 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 3.04 Total: -44.52 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -2.08 Total: -130.60 kcal Atomic # 8 Polarization: -124.85 SS G_CDS: -3.71 Total: -128.57 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 147.53 SS G_CDS: -0.25 Total: 147.28 kcal Total: -75.14 -1.48 -76.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.388 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds