Wall clock time and date at job start Mon Mar 30 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52586 * 2 1 4 4 C 1.53123 * 109.52422 * 239.80599 * 2 1 3 5 5 C 1.53039 * 109.27599 * 297.75290 * 4 2 1 6 6 N 1.46842 * 109.52209 * 300.81553 * 5 4 2 7 7 C 1.46844 * 111.20032 * 61.74489 * 6 5 4 8 8 H 1.08998 * 109.46128 * 58.27356 * 7 6 5 9 9 C 1.52997 * 109.46704 * 178.23941 * 7 6 5 10 10 C 1.53039 * 109.52656 * 298.25901 * 7 6 5 11 11 H 1.09001 * 109.50218 * 299.24065 * 10 7 6 12 12 N 1.46492 * 109.53950 * 179.13892 * 10 7 6 13 13 S 1.65599 * 120.00350 * 125.82885 * 12 10 7 14 14 O 1.42095 * 106.40352 * 177.55592 * 13 12 10 15 15 O 1.42103 * 106.39889 * 310.47072 * 13 12 10 16 16 C 1.76196 * 107.22154 * 64.01152 * 13 12 10 17 17 H 1.08004 * 119.99710 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00082 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00414 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99892 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47435 * 89.99876 * 20 18 16 22 22 H 1.48507 * 109.47147 * 209.99836 * 20 18 16 23 23 H 1.48500 * 109.47155 * 329.99874 * 20 18 16 24 24 H 1.09002 * 109.46777 * 299.87515 * 1 2 3 25 25 H 1.08997 * 109.47230 * 59.87277 * 1 2 3 26 26 H 1.09001 * 109.46949 * 179.87809 * 1 2 3 27 27 H 1.09001 * 109.49981 * 57.69336 * 4 2 1 28 28 H 1.08998 * 109.50608 * 177.76900 * 4 2 1 29 29 H 1.08992 * 109.46372 * 60.83632 * 5 4 2 30 30 H 1.08998 * 109.45695 * 180.81651 * 5 4 2 31 31 H 1.00898 * 111.00216 * 297.64790 * 6 5 4 32 32 H 1.09003 * 109.47578 * 185.32134 * 9 7 6 33 33 H 1.09004 * 109.47263 * 305.32438 * 9 7 6 34 34 H 1.08998 * 109.46960 * 65.32292 * 9 7 6 35 35 H 0.97002 * 120.00023 * 305.82153 * 12 10 7 36 36 H 0.96996 * 120.00864 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7258 -1.2474 5 6 1.5766 -2.1833 -1.2103 6 7 2.0924 -2.8324 0.0017 7 6 1.5767 -2.1819 1.2129 8 1 0.4872 -2.2154 1.2073 9 6 2.1026 -2.9149 2.4486 10 6 2.0417 -0.7243 1.2483 11 1 3.1310 -0.6902 1.2678 12 7 1.5103 -0.0694 2.4461 13 16 2.5368 0.6991 3.4940 14 8 1.7211 1.2728 4.5063 15 8 3.5884 -0.2162 3.7692 16 6 3.2642 2.0444 2.6192 17 1 2.9996 2.2239 1.5876 18 6 4.1713 2.8680 3.2515 19 7 4.4932 2.6499 4.5078 20 14 4.9420 4.2948 2.3242 21 1 4.1006 5.5067 2.4923 22 1 6.3014 4.5576 2.8612 23 1 5.0368 3.9542 0.8819 24 1 -0.3633 0.5119 0.8911 25 1 -0.3633 0.5158 -0.8888 26 1 -0.3633 -1.0277 -0.0022 27 1 1.6458 -0.2400 -2.1392 28 1 3.1310 -0.6912 -1.2674 29 1 0.4872 -2.2168 -1.2046 30 1 1.9515 -2.7066 -2.0899 31 1 3.1013 -2.8487 0.0017 32 1 1.6459 -2.4923 3.3436 33 1 1.8514 -3.9732 2.3777 34 1 3.1852 -2.8014 2.5050 35 1 0.5572 -0.0858 2.6254 36 1 5.1310 3.2295 4.9529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308795060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:42 Heat of formation + Delta-G solvation = -107.207939 kcal Electronic energy + Delta-G solvation = -19465.147922 eV Core-core repulsion = 16495.747833 eV Total energy + Delta-G solvation = -2969.400089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.60592 -35.18790 -34.06714 -33.92896 -33.26259 -33.02166 -29.79345 -27.12839 -26.20529 -25.81278 -22.77383 -21.27259 -19.12055 -18.98096 -17.43858 -16.31953 -15.72972 -15.28570 -14.97996 -14.64639 -14.47365 -14.12667 -13.80525 -13.46274 -13.11792 -12.58210 -12.13187 -12.03840 -11.90248 -11.43490 -11.31574 -11.23881 -11.10935 -10.91541 -10.81646 -10.63811 -10.56067 -10.34103 -10.28684 -10.22501 -10.10183 -9.26036 -9.13826 -8.70006 -7.98249 -6.71102 -5.32747 2.35834 3.04525 3.11687 3.17329 4.04144 4.34556 4.63268 4.75134 4.85727 5.00685 5.12818 5.18826 5.45167 5.48422 5.50345 5.72182 5.78565 5.80761 5.89877 5.96170 6.04024 6.09652 6.19432 6.22382 6.36021 6.40621 6.54473 6.58278 6.66012 6.84270 7.20137 7.31960 7.49720 7.91455 7.97980 8.88227 10.22966 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.008150 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.741128 B = 3434.725011 C = 3973.209861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.153 4.153 5 C 0.055 3.945 6 N -0.679 5.679 7 C 0.076 3.924 8 H 0.082 0.918 9 C -0.144 4.144 10 C 0.138 3.862 11 H 0.091 0.909 12 N -1.126 6.126 13 S 2.715 3.285 14 O -1.010 7.010 15 O -1.004 7.004 16 C -1.020 5.020 17 H 0.101 0.899 18 C 0.133 3.867 19 N -0.845 5.845 20 Si 0.918 3.082 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.263 1.263 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.341 0.659 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -6.473 -10.810 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 H 0.099 0.901 4 C -0.192 4.192 5 C -0.075 4.075 6 N -0.309 5.309 7 C -0.035 4.035 8 H 0.100 0.900 9 C -0.202 4.202 10 C 0.028 3.972 11 H 0.109 0.891 12 N -0.879 5.879 13 S 2.814 3.186 14 O -1.000 7.000 15 O -0.994 6.994 16 C -1.154 5.154 17 H 0.119 0.881 18 C -0.084 4.084 19 N -0.475 5.475 20 Si 0.742 3.258 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.187 1.187 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.188 -7.224 -9.747 13.195 hybrid contribution 0.634 2.196 -0.957 2.478 sum -4.553 -5.029 -10.704 12.673 Atomic orbital electron populations 1.21872 0.95286 1.01546 1.01771 1.21623 0.96414 1.00622 0.94293 0.90076 1.22327 1.01228 0.97546 0.98144 1.22057 1.00686 0.91944 0.92827 1.60823 1.14349 1.54280 1.01401 1.21925 1.00085 0.91295 0.90212 0.89970 1.21778 1.02322 0.99536 0.96530 1.21314 0.98889 0.92358 0.84645 0.89130 1.55993 1.20973 1.72355 1.38550 1.00431 0.72013 0.74016 0.72131 1.93370 1.70263 1.79048 1.57311 1.93363 1.55992 1.66032 1.84009 1.30591 1.39436 1.33605 1.11734 0.88112 1.24727 0.92718 0.96957 0.94046 1.69891 1.29756 1.37499 1.10339 0.86206 0.78521 0.80708 0.80378 1.19232 1.19968 1.18739 0.92109 0.93066 0.92516 0.91511 0.91713 0.90795 0.91056 0.84139 0.91972 0.92457 0.91779 0.76851 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.36 37.16 0.31 -1.53 16 2 C -0.11 -1.56 2.95 -90.49 -0.27 -1.83 16 3 H 0.08 1.30 7.67 -51.93 -0.40 0.91 16 4 C -0.15 -1.79 5.58 -26.65 -0.15 -1.94 16 5 C 0.05 0.59 6.31 -3.84 -0.02 0.57 16 6 N -0.68 -8.46 6.50 -106.77 -0.69 -9.15 16 7 C 0.08 1.09 2.49 -67.72 -0.17 0.92 16 8 H 0.08 1.11 6.51 -51.93 -0.34 0.78 16 9 C -0.14 -2.22 9.24 37.16 0.34 -1.88 16 10 C 0.14 2.29 2.07 -67.85 -0.14 2.15 16 11 H 0.09 1.68 7.62 -51.93 -0.40 1.29 16 12 N -1.13 -21.44 4.41 -4.82 -0.02 -21.46 16 13 S 2.71 70.26 4.90 -107.50 -0.53 69.73 16 14 O -1.01 -29.41 18.02 -57.17 -1.03 -30.44 16 15 O -1.00 -28.32 17.56 -57.17 -1.00 -29.33 16 16 C -1.02 -27.60 9.70 30.60 0.30 -27.30 16 17 H 0.10 2.49 7.34 -52.48 -0.39 2.11 16 18 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 19 N -0.85 -24.80 13.19 55.43 0.73 -24.07 16 20 Si 0.92 20.51 29.54 -169.99 -5.02 15.48 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 24 H 0.06 0.80 6.94 -51.93 -0.36 0.44 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.65 4.92 -51.93 -0.26 0.39 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.34 4.15 8.79 -39.29 -0.35 3.80 16 32 H 0.06 1.02 7.80 -51.93 -0.40 0.61 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.40 6.68 7.83 -34.47 -0.27 6.41 16 36 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -33.46 296.68 -8.15 -41.62 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.16 Total: 10.39 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 0.10 Total: -27.24 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.02 Total: -54.68 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -2.03 Total: -59.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 70.26 SS G_CDS: -0.53 Total: 69.73 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.46 -8.15 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308795060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.593 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds