Wall clock time and date at job start Mon Mar 30 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52586 * 2 1 4 4 C 1.53123 * 109.52422 * 239.80599 * 2 1 3 5 5 C 1.53039 * 109.27599 * 297.75290 * 4 2 1 6 6 N 1.46842 * 109.52209 * 300.81553 * 5 4 2 7 7 C 1.46844 * 111.20032 * 61.74489 * 6 5 4 8 8 H 1.08998 * 109.46128 * 58.27356 * 7 6 5 9 9 C 1.52997 * 109.46704 * 178.23941 * 7 6 5 10 10 C 1.53039 * 109.52656 * 298.25901 * 7 6 5 11 11 H 1.09001 * 109.50218 * 299.24065 * 10 7 6 12 12 N 1.46492 * 109.53950 * 179.13892 * 10 7 6 13 13 S 1.65599 * 120.00350 * 125.82885 * 12 10 7 14 14 O 1.42095 * 106.40352 * 177.55592 * 13 12 10 15 15 O 1.42103 * 106.39889 * 310.47072 * 13 12 10 16 16 C 1.76196 * 107.22154 * 64.01152 * 13 12 10 17 17 H 1.08004 * 119.99710 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00082 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00414 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99892 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47435 * 89.99876 * 20 18 16 22 22 H 1.48507 * 109.47147 * 209.99836 * 20 18 16 23 23 H 1.48500 * 109.47155 * 329.99874 * 20 18 16 24 24 H 1.09002 * 109.46777 * 299.87515 * 1 2 3 25 25 H 1.08997 * 109.47230 * 59.87277 * 1 2 3 26 26 H 1.09001 * 109.46949 * 179.87809 * 1 2 3 27 27 H 1.09001 * 109.49981 * 57.69336 * 4 2 1 28 28 H 1.08998 * 109.50608 * 177.76900 * 4 2 1 29 29 H 1.08992 * 109.46372 * 60.83632 * 5 4 2 30 30 H 1.08998 * 109.45695 * 180.81651 * 5 4 2 31 31 H 1.00898 * 111.00216 * 297.64790 * 6 5 4 32 32 H 1.09003 * 109.47578 * 185.32134 * 9 7 6 33 33 H 1.09004 * 109.47263 * 305.32438 * 9 7 6 34 34 H 1.08998 * 109.46960 * 65.32292 * 9 7 6 35 35 H 0.97002 * 120.00023 * 305.82153 * 12 10 7 36 36 H 0.96996 * 120.00864 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7258 -1.2474 5 6 1.5766 -2.1833 -1.2103 6 7 2.0924 -2.8324 0.0017 7 6 1.5767 -2.1819 1.2129 8 1 0.4872 -2.2154 1.2073 9 6 2.1026 -2.9149 2.4486 10 6 2.0417 -0.7243 1.2483 11 1 3.1310 -0.6902 1.2678 12 7 1.5103 -0.0694 2.4461 13 16 2.5368 0.6991 3.4940 14 8 1.7211 1.2728 4.5063 15 8 3.5884 -0.2162 3.7692 16 6 3.2642 2.0444 2.6192 17 1 2.9996 2.2239 1.5876 18 6 4.1713 2.8680 3.2515 19 7 4.4932 2.6499 4.5078 20 14 4.9420 4.2948 2.3242 21 1 4.1006 5.5067 2.4923 22 1 6.3014 4.5576 2.8612 23 1 5.0368 3.9542 0.8819 24 1 -0.3633 0.5119 0.8911 25 1 -0.3633 0.5158 -0.8888 26 1 -0.3633 -1.0277 -0.0022 27 1 1.6458 -0.2400 -2.1392 28 1 3.1310 -0.6912 -1.2674 29 1 0.4872 -2.2168 -1.2046 30 1 1.9515 -2.7066 -2.0899 31 1 3.1013 -2.8487 0.0017 32 1 1.6459 -2.4923 3.3436 33 1 1.8514 -3.9732 2.3777 34 1 3.1852 -2.8014 2.5050 35 1 0.5572 -0.0858 2.6254 36 1 5.1310 3.2295 4.9529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308795060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:42 Heat of formation + Delta-G solvation = -135.457678 kcal Electronic energy + Delta-G solvation = -19466.372923 eV Core-core repulsion = 16495.747833 eV Total energy + Delta-G solvation = -2970.625089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75582 -37.36556 -36.11900 -35.45706 -35.12693 -34.30622 -31.06966 -28.29016 -28.14526 -27.10157 -23.84242 -22.44036 -21.01559 -20.23704 -19.34105 -18.26879 -17.33661 -16.87366 -16.24751 -16.03354 -15.85222 -15.58206 -15.38450 -15.15856 -14.21111 -14.01332 -13.73550 -13.35838 -13.27613 -13.04925 -12.97216 -12.58600 -12.53303 -12.47298 -12.38006 -12.34043 -12.15690 -12.06752 -11.90173 -11.45185 -11.36542 -11.27349 -10.95320 -10.38763 -9.14714 -8.76468 -7.49327 0.37749 1.30674 1.30920 1.46541 2.17780 2.56194 2.95541 3.41003 3.65264 3.74329 3.89116 4.02933 4.10487 4.29389 4.37595 4.49452 4.56638 4.65316 4.74113 4.82303 4.85420 4.95506 5.04229 5.12057 5.14593 5.18733 5.24475 5.28175 5.38323 5.40890 5.59309 5.88940 6.13662 6.40508 6.50209 6.77046 8.19108 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.008150 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.741128 B = 3434.725011 C = 3973.209861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.059 0.941 4 C -0.147 4.147 5 C 0.056 3.944 6 N -0.676 5.676 7 C 0.086 3.914 8 H 0.098 0.902 9 C -0.145 4.145 10 C 0.131 3.869 11 H 0.064 0.936 12 N -1.109 6.109 13 S 2.721 3.279 14 O -1.050 7.050 15 O -1.037 7.037 16 C -1.038 5.038 17 H 0.117 0.883 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.986 3.014 21 H -0.256 1.256 22 H -0.263 1.263 23 H -0.248 1.248 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.342 0.658 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.413 0.587 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 -6.510 -13.620 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 H 0.077 0.923 4 C -0.187 4.187 5 C -0.073 4.073 6 N -0.305 5.305 7 C -0.025 4.025 8 H 0.116 0.884 9 C -0.203 4.203 10 C 0.022 3.978 11 H 0.082 0.918 12 N -0.867 5.867 13 S 2.822 3.178 14 O -1.040 7.040 15 O -1.026 7.026 16 C -1.172 5.172 17 H 0.135 0.865 18 C -0.142 4.142 19 N -0.526 5.526 20 Si 0.804 3.196 21 H -0.180 1.180 22 H -0.187 1.187 23 H -0.171 1.171 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.160 0.840 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.922 -7.284 -12.561 15.682 hybrid contribution 0.822 2.123 -0.112 2.279 sum -5.100 -5.161 -12.674 14.604 Atomic orbital electron populations 1.21869 0.93541 1.02670 1.02160 1.21613 0.97899 0.99352 0.94171 0.92289 1.22313 1.00886 0.98131 0.97387 1.22174 1.01343 0.91183 0.92606 1.60857 1.14555 1.53792 1.01273 1.21805 1.00801 0.89258 0.90684 0.88400 1.21782 1.00786 1.01054 0.96684 1.21603 0.97535 0.94267 0.84420 0.91816 1.55339 1.20838 1.71816 1.38715 0.99865 0.71832 0.73816 0.72329 1.93303 1.70998 1.79957 1.59762 1.93314 1.57690 1.66688 1.84955 1.30938 1.39634 1.33974 1.12610 0.86476 1.25979 0.93167 1.00187 0.94906 1.69987 1.30992 1.39289 1.12316 0.85187 0.78055 0.76807 0.79508 1.17985 1.18683 1.17082 0.93244 0.91239 0.90988 0.89396 0.92386 0.89727 0.88790 0.84033 0.93613 0.90304 0.93937 0.75235 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.36 71.98 0.60 -2.63 16 2 C -0.11 -2.97 2.95 -10.71 -0.03 -3.00 16 3 H 0.06 1.84 7.67 -2.39 -0.02 1.82 16 4 C -0.15 -3.04 5.58 30.65 0.17 -2.87 16 5 C 0.06 1.01 6.31 86.33 0.54 1.55 16 6 N -0.68 -15.19 6.50 -491.71 -3.20 -18.39 16 7 C 0.09 2.34 2.49 44.94 0.11 2.45 16 8 H 0.10 2.39 6.51 -2.39 -0.02 2.37 16 9 C -0.15 -4.46 9.24 71.98 0.67 -3.79 16 10 C 0.13 4.30 2.07 45.05 0.09 4.39 16 11 H 0.06 2.43 7.62 -2.39 -0.02 2.41 16 12 N -1.11 -42.75 4.41 -169.17 -0.75 -43.50 16 13 S 2.72 145.47 4.90 -56.49 -0.28 145.19 16 14 O -1.05 -63.34 18.02 -128.00 -2.31 -65.65 16 15 O -1.04 -61.00 17.56 -128.00 -2.25 -63.24 16 16 C -1.04 -56.95 9.70 67.73 0.66 -56.29 16 17 H 0.12 5.80 7.34 -2.91 -0.02 5.78 16 18 C 0.07 3.93 5.46 84.65 0.46 4.39 16 19 N -0.89 -53.75 13.19 21.45 0.28 -53.46 16 20 Si 0.99 41.41 29.54 68.60 2.03 43.44 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 H 0.05 1.20 6.94 -2.39 -0.02 1.19 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.38 4.92 -2.39 -0.01 1.37 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.40 6.51 -2.39 -0.02 1.38 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.34 7.76 8.79 -89.70 -0.79 6.97 16 32 H 0.04 1.52 7.80 -2.39 -0.02 1.50 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.41 13.81 7.83 -96.75 -0.76 13.05 16 36 H 0.30 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -73.91 296.68 -3.64 -77.55 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.45 Total: 33.85 kcal Atomic # 6 Polarization: -59.07 SS G_CDS: 3.28 Total: -55.79 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -3.66 Total: -115.35 kcal Atomic # 8 Polarization: -124.34 SS G_CDS: -4.55 Total: -128.89 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 145.47 SS G_CDS: -0.28 Total: 145.19 kcal Total: -73.91 -3.64 -77.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308795060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.905 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds