Wall clock time and date at job start Mon Mar 30 2020 04:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.51994 * 2 1 4 4 C 1.53116 * 109.52704 * 239.87173 * 2 1 3 5 5 C 1.53029 * 109.28201 * 182.37655 * 4 2 1 6 6 N 1.46853 * 109.52482 * 59.18008 * 5 4 2 7 7 C 1.46847 * 111.19473 * 298.26185 * 6 5 4 8 8 H 1.09004 * 109.46270 * 181.74713 * 7 6 5 9 9 C 1.53006 * 109.46216 * 301.72039 * 7 6 5 10 10 C 1.53034 * 109.52655 * 61.73760 * 7 6 5 11 11 H 1.08999 * 109.50428 * 60.76541 * 10 7 6 12 12 N 1.46506 * 109.50175 * 180.87656 * 10 7 6 13 13 S 1.65598 * 120.00379 * 265.00278 * 12 10 7 14 14 O 1.42097 * 106.40212 * 178.54042 * 13 12 10 15 15 O 1.42102 * 106.39951 * 311.45882 * 13 12 10 16 16 C 1.76200 * 107.21793 * 65.00006 * 13 12 10 17 17 H 1.08001 * 120.00251 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99944 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00302 * 180.02562 * 18 16 13 20 20 Si 1.86808 * 120.00009 * 0.02562 * 18 16 13 21 21 H 1.48491 * 109.46987 * 90.00242 * 20 18 16 22 22 H 1.48505 * 109.46694 * 210.00263 * 20 18 16 23 23 H 1.48494 * 109.46934 * 329.99811 * 20 18 16 24 24 H 1.09000 * 109.47071 * 180.13116 * 1 2 3 25 25 H 1.09000 * 109.47213 * 300.12965 * 1 2 3 26 26 H 1.08995 * 109.47445 * 60.12684 * 1 2 3 27 27 H 1.08999 * 109.50008 * 62.43455 * 4 2 1 28 28 H 1.09006 * 109.53440 * 302.33979 * 4 2 1 29 29 H 1.08998 * 109.46505 * 299.16653 * 5 4 2 30 30 H 1.09005 * 109.46348 * 179.19219 * 5 4 2 31 31 H 1.00892 * 111.00237 * 174.16089 * 6 5 4 32 32 H 1.09001 * 109.47002 * 60.00178 * 9 7 6 33 33 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.47050 * 300.00444 * 9 7 6 35 35 H 0.97006 * 119.99407 * 85.00094 * 12 10 7 36 36 H 0.96997 * 120.00241 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 -1.2481 5 6 3.5709 -0.7731 -1.2128 6 7 4.0116 -1.4766 -0.0014 7 6 3.5721 -0.7735 1.2105 8 1 3.9398 -1.3016 2.0903 9 6 4.1275 0.6522 1.2025 10 6 2.0430 -0.7247 1.2474 11 1 1.6468 -1.7400 1.2672 12 7 1.6054 -0.0049 2.4461 13 16 1.2173 -0.8436 3.8202 14 8 0.8706 0.1271 4.7983 15 8 0.3426 -1.8891 3.4186 16 6 2.6922 -1.6205 4.3911 17 1 3.6162 -1.4908 3.8472 18 6 2.6664 -2.3949 5.5315 19 7 3.7673 -2.9743 5.9580 20 14 1.0677 -2.6210 6.4711 21 1 0.3494 -3.8101 5.9467 22 1 1.3645 -2.8178 7.9128 23 1 0.2187 -1.4146 6.3008 24 1 -0.3633 -1.0277 0.0024 25 1 -0.3633 0.5158 0.8888 26 1 -0.3634 0.5118 -0.8911 27 1 1.7152 -0.1885 -2.1394 28 1 1.6456 -1.7397 -1.2685 29 1 3.9666 0.2425 -1.2071 30 1 3.9379 -1.3009 -2.0931 31 1 5.0123 -1.6054 -0.0020 32 1 3.7602 1.1803 0.3226 33 1 3.8017 1.1740 2.1022 34 1 5.2167 0.6176 1.1772 35 1 1.5430 0.9631 2.4347 36 1 3.7492 -3.5188 6.7605 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308795062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:49 Heat of formation + Delta-G solvation = -88.418249 kcal Electronic energy + Delta-G solvation = -19525.254031 eV Core-core repulsion = 16556.668724 eV Total energy + Delta-G solvation = -2968.585307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48833 -35.57384 -34.40361 -34.31257 -33.14927 -32.98734 -29.70752 -27.56001 -26.43025 -25.83504 -22.33709 -21.56972 -18.96734 -18.75669 -17.53553 -16.66859 -16.43205 -15.42389 -14.88464 -14.83783 -14.24474 -13.82894 -13.56355 -13.33458 -13.29785 -12.86516 -12.66655 -12.15300 -12.08165 -11.73618 -11.57502 -11.43892 -11.34113 -11.02262 -10.70748 -10.61018 -10.57704 -10.42576 -10.33195 -10.03943 -9.71655 -9.17968 -9.05147 -8.60945 -8.16420 -6.77008 -5.30363 2.12671 3.09580 3.20701 3.29602 3.98039 4.21253 4.56583 4.63665 4.91017 4.95551 4.97239 5.25367 5.41764 5.44773 5.58225 5.60546 5.68568 5.71594 5.81001 5.90580 6.04094 6.08750 6.12482 6.18209 6.24165 6.32473 6.41275 6.49968 6.61115 6.75326 7.29887 7.50931 7.58445 7.79131 8.25309 8.74572 10.34799 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028137 B = 0.008263 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.904351 B = 3387.631439 C = 3866.785910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.110 4.110 5 C 0.052 3.948 6 N -0.680 5.680 7 C 0.057 3.943 8 H 0.106 0.894 9 C -0.185 4.185 10 C 0.174 3.826 11 H 0.100 0.900 12 N -1.117 6.117 13 S 2.674 3.326 14 O -1.012 7.012 15 O -1.010 7.010 16 C -1.014 5.014 17 H 0.125 0.875 18 C 0.154 3.846 19 N -0.823 5.823 20 Si 0.801 3.199 21 H -0.247 1.247 22 H -0.256 1.256 23 H -0.221 1.221 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.343 0.657 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.403 0.597 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 5.645 -12.673 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.078 4.078 6 N -0.311 5.311 7 C -0.054 4.054 8 H 0.124 0.876 9 C -0.243 4.243 10 C 0.065 3.935 11 H 0.118 0.882 12 N -0.871 5.871 13 S 2.775 3.225 14 O -1.002 7.002 15 O -1.000 7.000 16 C -1.148 5.148 17 H 0.143 0.857 18 C -0.065 4.065 19 N -0.452 5.452 20 Si 0.621 3.379 21 H -0.170 1.170 22 H -0.180 1.180 23 H -0.143 1.143 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.161 0.839 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.235 0.765 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.518 4.859 -12.173 13.194 hybrid contribution 0.895 0.853 0.536 1.348 sum -0.623 5.712 -11.637 12.978 Atomic orbital electron populations 1.21801 0.94794 1.02512 1.01255 1.21462 0.96196 0.99539 0.94561 0.91055 1.21624 0.94909 1.01503 0.96853 1.21958 0.95956 0.96745 0.93109 1.60376 1.18580 1.50798 1.01296 1.22276 0.96138 0.93048 0.93928 0.87603 1.22494 1.00394 0.98972 1.02485 1.20573 0.92311 0.96714 0.83881 0.88172 1.55541 1.85831 1.17902 1.27789 1.01383 0.76263 0.73540 0.71274 1.93470 1.85724 1.62887 1.58098 1.93408 1.67312 1.57060 1.82233 1.30548 1.16894 1.45671 1.21725 0.85731 1.24403 0.96597 0.90914 0.94575 1.69983 1.27364 1.25968 1.21903 0.87880 0.84300 0.83687 0.82060 1.17034 1.18036 1.14347 0.92120 0.92342 0.93149 0.91691 0.90779 0.94989 0.91194 0.83943 0.92572 0.91336 0.93171 0.76520 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.07 37.16 0.34 -1.60 16 2 C -0.10 -1.30 2.10 -90.50 -0.19 -1.49 16 3 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16 4 C -0.11 -1.29 5.38 -26.66 -0.14 -1.43 16 5 C 0.05 0.59 6.25 -3.83 -0.02 0.56 16 6 N -0.68 -9.38 6.65 -106.76 -0.71 -10.09 16 7 C 0.06 0.92 3.40 -67.72 -0.23 0.69 16 8 H 0.11 2.02 5.77 -51.93 -0.30 1.73 16 9 C -0.18 -2.55 8.42 37.16 0.31 -2.23 16 10 C 0.17 2.95 2.07 -67.85 -0.14 2.81 16 11 H 0.10 1.94 7.51 -51.93 -0.39 1.55 16 12 N -1.12 -20.79 4.11 -4.82 -0.02 -20.81 16 13 S 2.67 65.92 4.22 -107.50 -0.45 65.47 16 14 O -1.01 -27.03 16.02 -57.17 -0.92 -27.94 16 15 O -1.01 -26.88 16.17 -57.17 -0.92 -27.81 16 16 C -1.01 -27.69 10.11 30.60 0.31 -27.38 16 17 H 0.12 3.36 5.88 -52.49 -0.31 3.05 16 18 C 0.15 4.41 5.47 -17.82 -0.10 4.31 16 19 N -0.82 -23.58 13.96 55.43 0.77 -22.81 16 20 Si 0.80 20.70 26.54 -169.99 -4.51 16.19 16 21 H -0.25 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.22 -5.85 5.61 56.52 0.32 -5.53 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.82 7.69 -51.93 -0.40 0.42 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.34 6.19 -51.93 -0.32 0.02 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.34 4.19 8.90 -39.30 -0.35 3.84 16 32 H 0.06 0.68 4.80 -51.93 -0.25 0.43 16 33 H 0.07 1.00 7.42 -51.93 -0.39 0.61 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 6.43 8.62 -34.47 -0.30 6.13 16 36 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -31.87 286.25 -7.41 -39.28 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.10 Total: 9.97 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 0.13 Total: -25.77 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.04 Total: -53.71 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -1.84 Total: -55.75 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.19 kcal Atomic # 16 Polarization: 65.92 SS G_CDS: -0.45 Total: 65.47 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.87 -7.41 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308795062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.135 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds