Wall clock time and date at job start Mon Mar 30 2020 04:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.51994 * 2 1 4 4 C 1.53116 * 109.52704 * 239.87173 * 2 1 3 5 5 C 1.53029 * 109.28201 * 182.37655 * 4 2 1 6 6 N 1.46853 * 109.52482 * 59.18008 * 5 4 2 7 7 C 1.46847 * 111.19473 * 298.26185 * 6 5 4 8 8 H 1.09004 * 109.46270 * 181.74713 * 7 6 5 9 9 C 1.53006 * 109.46216 * 301.72039 * 7 6 5 10 10 C 1.53034 * 109.52655 * 61.73760 * 7 6 5 11 11 H 1.08999 * 109.50428 * 60.76541 * 10 7 6 12 12 N 1.46506 * 109.50175 * 180.87656 * 10 7 6 13 13 S 1.65598 * 120.00379 * 265.00278 * 12 10 7 14 14 O 1.42097 * 106.40212 * 178.54042 * 13 12 10 15 15 O 1.42102 * 106.39951 * 311.45882 * 13 12 10 16 16 C 1.76200 * 107.21793 * 65.00006 * 13 12 10 17 17 H 1.08001 * 120.00251 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99944 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00302 * 180.02562 * 18 16 13 20 20 Si 1.86808 * 120.00009 * 0.02562 * 18 16 13 21 21 H 1.48491 * 109.46987 * 90.00242 * 20 18 16 22 22 H 1.48505 * 109.46694 * 210.00263 * 20 18 16 23 23 H 1.48494 * 109.46934 * 329.99811 * 20 18 16 24 24 H 1.09000 * 109.47071 * 180.13116 * 1 2 3 25 25 H 1.09000 * 109.47213 * 300.12965 * 1 2 3 26 26 H 1.08995 * 109.47445 * 60.12684 * 1 2 3 27 27 H 1.08999 * 109.50008 * 62.43455 * 4 2 1 28 28 H 1.09006 * 109.53440 * 302.33979 * 4 2 1 29 29 H 1.08998 * 109.46505 * 299.16653 * 5 4 2 30 30 H 1.09005 * 109.46348 * 179.19219 * 5 4 2 31 31 H 1.00892 * 111.00237 * 174.16089 * 6 5 4 32 32 H 1.09001 * 109.47002 * 60.00178 * 9 7 6 33 33 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.47050 * 300.00444 * 9 7 6 35 35 H 0.97006 * 119.99407 * 85.00094 * 12 10 7 36 36 H 0.96997 * 120.00241 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 -1.2481 5 6 3.5709 -0.7731 -1.2128 6 7 4.0116 -1.4766 -0.0014 7 6 3.5721 -0.7735 1.2105 8 1 3.9398 -1.3016 2.0903 9 6 4.1275 0.6522 1.2025 10 6 2.0430 -0.7247 1.2474 11 1 1.6468 -1.7400 1.2672 12 7 1.6054 -0.0049 2.4461 13 16 1.2173 -0.8436 3.8202 14 8 0.8706 0.1271 4.7983 15 8 0.3426 -1.8891 3.4186 16 6 2.6922 -1.6205 4.3911 17 1 3.6162 -1.4908 3.8472 18 6 2.6664 -2.3949 5.5315 19 7 3.7673 -2.9743 5.9580 20 14 1.0677 -2.6210 6.4711 21 1 0.3494 -3.8101 5.9467 22 1 1.3645 -2.8178 7.9128 23 1 0.2187 -1.4146 6.3008 24 1 -0.3633 -1.0277 0.0024 25 1 -0.3633 0.5158 0.8888 26 1 -0.3634 0.5118 -0.8911 27 1 1.7152 -0.1885 -2.1394 28 1 1.6456 -1.7397 -1.2685 29 1 3.9666 0.2425 -1.2071 30 1 3.9379 -1.3009 -2.0931 31 1 5.0123 -1.6054 -0.0020 32 1 3.7602 1.1803 0.3226 33 1 3.8017 1.1740 2.1022 34 1 5.2167 0.6176 1.1772 35 1 1.5430 0.9631 2.4347 36 1 3.7492 -3.5188 6.7605 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308795062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:49 Heat of formation + Delta-G solvation = -115.520613 kcal Electronic energy + Delta-G solvation = -19526.429277 eV Core-core repulsion = 16556.668724 eV Total energy + Delta-G solvation = -2969.760553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65629 -37.64830 -36.47375 -35.64371 -35.14539 -34.28065 -30.94436 -28.62511 -28.50561 -27.11281 -23.43895 -22.71430 -20.90759 -19.98328 -19.47760 -18.55150 -17.76614 -17.17448 -16.49032 -16.11859 -15.79618 -15.34008 -14.99518 -14.95619 -14.84825 -14.62955 -13.72085 -13.56075 -13.38291 -13.27380 -13.06216 -12.98739 -12.68421 -12.57327 -12.50994 -12.46210 -12.22352 -11.92374 -11.66254 -11.35231 -11.32676 -11.18581 -10.93869 -10.17646 -9.23111 -8.93451 -7.47565 0.18186 1.04284 1.13818 1.20889 1.89468 2.44185 2.56713 3.29238 3.45984 3.72909 3.83372 3.96333 4.16861 4.27346 4.32752 4.49712 4.57057 4.63766 4.67277 4.75094 4.85859 4.92496 4.96229 5.12149 5.15074 5.23272 5.25971 5.31973 5.42737 5.45083 5.60451 6.09872 6.20798 6.35809 6.57822 6.59023 8.23286 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028137 B = 0.008263 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.904351 B = 3387.631439 C = 3866.785910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.092 0.908 4 C -0.109 4.109 5 C 0.051 3.949 6 N -0.692 5.692 7 C 0.059 3.941 8 H 0.064 0.936 9 C -0.179 4.179 10 C 0.166 3.834 11 H 0.068 0.932 12 N -1.099 6.099 13 S 2.694 3.306 14 O -1.032 7.032 15 O -1.032 7.032 16 C -1.032 5.032 17 H 0.117 0.883 18 C 0.111 3.889 19 N -0.852 5.852 20 Si 0.820 3.180 21 H -0.242 1.242 22 H -0.221 1.221 23 H -0.231 1.231 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.350 0.650 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.419 0.581 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 6.927 -14.527 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.110 0.890 4 C -0.147 4.147 5 C -0.078 4.078 6 N -0.324 5.324 7 C -0.052 4.052 8 H 0.082 0.918 9 C -0.238 4.238 10 C 0.059 3.941 11 H 0.086 0.914 12 N -0.858 5.858 13 S 2.794 3.206 14 O -1.022 7.022 15 O -1.022 7.022 16 C -1.165 5.165 17 H 0.134 0.866 18 C -0.105 4.105 19 N -0.482 5.482 20 Si 0.638 3.362 21 H -0.166 1.166 22 H -0.143 1.143 23 H -0.154 1.154 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.254 0.746 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.672 6.134 -14.009 15.384 hybrid contribution 0.994 0.456 1.003 1.484 sum -0.678 6.591 -13.006 14.596 Atomic orbital electron populations 1.21841 0.94728 1.01808 1.02269 1.21479 0.96262 1.00241 0.93155 0.88980 1.21669 0.95095 1.00972 0.96987 1.22090 0.95733 0.97622 0.92364 1.60330 1.19344 1.51339 1.01423 1.22026 0.95310 0.94238 0.93664 0.91759 1.22445 1.00993 0.97299 1.03050 1.20769 0.93180 0.95593 0.84598 0.91366 1.54998 1.85618 1.18558 1.26644 1.00565 0.75089 0.73055 0.71867 1.93431 1.85767 1.63051 1.59997 1.93376 1.67542 1.58413 1.82828 1.31052 1.18143 1.45701 1.21592 0.86555 1.25085 0.98709 0.91138 0.95586 1.70005 1.28477 1.26815 1.22904 0.87568 0.81839 0.83294 0.83540 1.16588 1.14304 1.15406 0.93724 0.93486 0.90018 0.88433 0.92164 0.93437 0.89155 0.83054 0.90089 0.92469 0.92261 0.74593 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.07 71.98 0.65 -2.98 16 2 C -0.09 -2.21 2.10 -10.72 -0.02 -2.23 16 3 H 0.09 1.88 6.56 -2.39 -0.02 1.87 16 4 C -0.11 -2.18 5.38 30.64 0.16 -2.02 16 5 C 0.05 0.98 6.25 86.32 0.54 1.52 16 6 N -0.69 -18.22 6.65 -491.67 -3.27 -21.49 16 7 C 0.06 1.88 3.40 44.94 0.15 2.03 16 8 H 0.06 2.57 5.77 -2.38 -0.01 2.55 16 9 C -0.18 -4.61 8.42 71.98 0.61 -4.00 16 10 C 0.17 5.58 2.07 45.04 0.09 5.67 16 11 H 0.07 2.72 7.51 -2.39 -0.02 2.71 16 12 N -1.10 -40.70 4.11 -169.17 -0.70 -41.39 16 13 S 2.69 134.47 4.22 -56.49 -0.24 134.23 16 14 O -1.03 -55.30 16.02 -128.00 -2.05 -57.35 16 15 O -1.03 -55.75 16.17 -128.00 -2.07 -57.82 16 16 C -1.03 -57.84 10.11 67.73 0.68 -57.15 16 17 H 0.12 6.55 5.88 -2.91 -0.02 6.54 16 18 C 0.11 6.45 5.47 84.65 0.46 6.91 16 19 N -0.85 -49.48 13.96 21.45 0.30 -49.18 16 20 Si 0.82 41.79 26.54 68.60 1.82 43.61 16 21 H -0.24 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.22 -9.93 7.11 99.48 0.71 -9.23 16 23 H -0.23 -12.15 5.61 99.48 0.56 -11.59 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.23 7.69 -2.39 -0.02 1.22 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.05 0.80 6.19 -2.39 -0.01 0.79 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.35 8.15 8.90 -89.70 -0.80 7.35 16 32 H 0.08 1.66 4.80 -2.39 -0.01 1.65 16 33 H 0.06 1.59 7.42 -2.39 -0.02 1.57 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.42 12.89 8.62 -96.74 -0.83 12.06 16 36 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -69.33 286.25 -3.54 -72.87 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.67 Total: 28.76 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.33 Total: -52.25 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.67 Total: -112.06 kcal Atomic # 8 Polarization: -111.05 SS G_CDS: -4.12 Total: -115.17 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.82 Total: 43.61 kcal Atomic # 16 Polarization: 134.47 SS G_CDS: -0.24 Total: 134.23 kcal Total: -69.33 -3.54 -72.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308795062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.652 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds