Wall clock time and date at job start Mon Mar 30 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47222 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4 11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.53773 * 113.61451 * 252.49922 * 13 12 2 15 15 C 1.53779 * 87.08236 * 220.01780 * 14 13 12 16 16 N 1.46499 * 113.61931 * 270.88401 * 15 14 13 17 17 S 1.65596 * 120.00329 * 242.49996 * 16 15 14 18 18 C 1.81401 * 104.45012 * 64.99383 * 17 16 15 19 19 O 1.42097 * 104.28137 * 181.06693 * 17 16 15 20 20 O 1.42099 * 104.27486 * 308.92575 * 17 16 15 21 21 C 1.53774 * 113.61273 * 155.00113 * 13 12 2 22 22 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 24 24 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 25 25 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 27 27 H 1.09000 * 112.84927 * 23.80491 * 13 12 2 28 28 H 1.09006 * 113.61615 * 334.56574 * 14 13 12 29 29 H 1.09003 * 113.61832 * 105.46900 * 14 13 12 30 30 H 1.09005 * 113.61336 * 139.97663 * 15 14 13 31 31 H 0.96996 * 119.99660 * 62.49145 * 16 15 14 32 32 H 1.08997 * 109.47225 * 60.00287 * 18 17 16 33 33 H 1.09002 * 109.47021 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47373 * 300.00138 * 18 17 16 35 35 H 1.08999 * 113.61402 * 254.52887 * 21 13 12 36 36 H 1.08997 * 113.61783 * 25.43488 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.5153 0.6155 2.7437 15 6 3.0600 0.4912 4.2073 16 7 2.5124 1.7329 4.7591 17 16 3.2593 2.4701 6.0401 18 6 4.8745 2.9795 5.3903 19 8 2.4501 3.6062 6.3114 20 8 3.4125 1.4336 7.0001 21 6 1.9845 -0.4877 3.7073 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.7095 1.1619 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 1.4068 1.0721 2.2482 28 1 4.2656 -0.1209 2.4558 29 1 3.7853 1.6314 2.4552 30 1 3.8026 0.0290 4.8578 31 1 1.7123 2.1234 4.3740 32 1 4.7304 3.6641 4.5544 33 1 5.4411 3.4792 6.1761 34 1 5.4228 2.1011 5.0500 35 1 1.0187 -0.3624 4.1967 36 1 2.3164 -1.5256 3.6829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309015263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:32 Heat of formation + Delta-G solvation = -51.124553 kcal Electronic energy + Delta-G solvation = -18142.909619 eV Core-core repulsion = 15175.941488 eV Total energy + Delta-G solvation = -2966.968131 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.23937 -37.21033 -36.09006 -35.28411 -32.87741 -31.36194 -29.66837 -27.66822 -25.47977 -25.13796 -23.21347 -20.25029 -19.90522 -19.07132 -17.84482 -16.46647 -16.28643 -16.13155 -15.35156 -14.92591 -14.77018 -14.03657 -13.54427 -13.50032 -13.30541 -12.80784 -12.65525 -12.37127 -12.23869 -12.14562 -11.90640 -11.83097 -11.36459 -11.18822 -11.00874 -10.89625 -10.53614 -10.35022 -10.26962 -10.16096 -9.71911 -9.38730 -8.95078 -8.38776 -7.29991 -6.00795 -4.03954 0.12434 2.56171 3.29676 3.37702 3.42646 3.64494 4.04372 4.42177 4.54020 4.65065 4.76413 4.80880 5.01788 5.15995 5.21747 5.31218 5.46186 5.59068 5.85440 6.02937 6.05291 6.27031 6.40594 6.59856 6.66986 6.80582 6.93047 7.08190 7.36173 7.71979 7.87720 8.26470 8.50979 8.60283 9.03817 9.61728 11.06306 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.003966 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.868016 B = 7057.484008 C = 7093.259022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.672 5.672 13 C 0.066 3.934 14 C -0.141 4.141 15 C 0.118 3.882 16 N -1.099 6.099 17 S 2.618 3.382 18 C -0.672 4.672 19 O -0.964 6.964 20 O -0.960 6.960 21 C -0.147 4.147 22 H 0.027 0.973 23 H 0.004 0.996 24 H 0.088 0.912 25 H 0.259 0.741 26 H 0.327 0.673 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.419 0.581 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 2.528 14.574 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.302 5.302 13 C -0.046 4.046 14 C -0.181 4.181 15 C 0.010 3.990 16 N -0.857 5.857 17 S 2.710 3.290 18 C -0.822 4.822 19 O -0.955 6.955 20 O -0.950 6.950 21 C -0.187 4.187 22 H 0.046 0.954 23 H 0.023 0.977 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.254 0.746 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.101 2.758 15.209 16.617 hybrid contribution -0.564 0.007 -1.533 1.634 sum 5.537 2.765 13.675 15.010 Atomic orbital electron populations 1.22447 1.00777 0.99175 1.00419 1.19222 0.89499 0.94360 0.86727 0.94931 1.21195 1.30098 1.12384 0.89629 0.91919 1.24957 0.95349 0.95204 0.99079 1.69891 1.37417 1.23238 1.23226 0.86468 0.78505 0.79658 0.82898 1.19742 1.21230 1.21187 1.60915 1.57557 1.08608 1.03086 1.22891 0.95913 0.95957 0.89794 1.23616 0.99116 1.02165 0.93250 1.21652 0.97298 0.84622 0.95450 1.55321 1.40787 1.35335 1.54244 1.04567 0.76649 0.73985 0.73809 1.30542 1.24739 1.13061 1.13870 1.93614 1.65623 1.52660 1.83556 1.93612 1.86886 1.56344 1.58169 1.23568 0.98754 0.99325 0.97031 0.95358 0.97722 0.89349 0.93146 0.85506 0.91843 0.88314 0.91620 0.87982 0.74629 0.85113 0.85659 0.85199 0.91330 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.93 37.16 0.33 -3.61 16 2 C 0.21 5.05 2.43 -68.87 -0.17 4.89 16 3 H 0.03 0.87 7.84 -51.93 -0.41 0.46 16 4 C -0.49 -13.32 8.84 -34.44 -0.30 -13.62 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.05 1.48 5.30 -17.82 -0.09 1.39 16 7 N -0.90 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.67 -13.16 6.29 -100.11 -0.63 -13.79 16 13 C 0.07 1.03 3.66 -66.91 -0.24 0.79 16 14 C -0.14 -1.85 7.68 -25.92 -0.20 -2.05 16 15 C 0.12 1.29 4.39 -67.12 -0.29 0.99 16 16 N -1.10 -11.01 5.62 -4.20 -0.02 -11.03 16 17 S 2.62 25.16 6.07 -107.50 -0.65 24.50 16 18 C -0.67 -4.31 10.89 101.05 1.10 -3.21 16 19 O -0.96 -12.56 18.08 -57.54 -1.04 -13.60 16 20 O -0.96 -12.39 17.58 -57.54 -1.01 -13.40 16 21 C -0.15 -1.83 7.44 -25.92 -0.19 -2.02 16 22 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 23 H 0.00 0.08 7.74 -51.92 -0.40 -0.32 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.33 6.13 8.29 -39.29 -0.33 5.80 16 27 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.10 0.95 7.77 -51.93 -0.40 0.55 16 31 H 0.42 4.08 8.75 -34.47 -0.30 3.78 16 32 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 310.52 15.07 4.68 4.68 Total: -1.00 -33.30 310.52 -8.60 -41.91 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.47 Total: 5.76 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.07 Total: -16.46 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.03 Total: -49.50 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -2.05 Total: -27.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 25.16 SS G_CDS: -0.65 Total: 24.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.30 -8.60 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309015263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.215 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds