Wall clock time and date at job start Mon Mar 30 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47222 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4 11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.53773 * 113.61451 * 252.49922 * 13 12 2 15 15 C 1.53779 * 87.08236 * 220.01780 * 14 13 12 16 16 N 1.46499 * 113.61931 * 270.88401 * 15 14 13 17 17 S 1.65596 * 120.00329 * 242.49996 * 16 15 14 18 18 C 1.81401 * 104.45012 * 64.99383 * 17 16 15 19 19 O 1.42097 * 104.28137 * 181.06693 * 17 16 15 20 20 O 1.42099 * 104.27486 * 308.92575 * 17 16 15 21 21 C 1.53774 * 113.61273 * 155.00113 * 13 12 2 22 22 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 24 24 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 25 25 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 27 27 H 1.09000 * 112.84927 * 23.80491 * 13 12 2 28 28 H 1.09006 * 113.61615 * 334.56574 * 14 13 12 29 29 H 1.09003 * 113.61832 * 105.46900 * 14 13 12 30 30 H 1.09005 * 113.61336 * 139.97663 * 15 14 13 31 31 H 0.96996 * 119.99660 * 62.49145 * 16 15 14 32 32 H 1.08997 * 109.47225 * 60.00287 * 18 17 16 33 33 H 1.09002 * 109.47021 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47373 * 300.00138 * 18 17 16 35 35 H 1.08999 * 113.61402 * 254.52887 * 21 13 12 36 36 H 1.08997 * 113.61783 * 25.43488 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.5153 0.6155 2.7437 15 6 3.0600 0.4912 4.2073 16 7 2.5124 1.7329 4.7591 17 16 3.2593 2.4701 6.0401 18 6 4.8745 2.9795 5.3903 19 8 2.4501 3.6062 6.3114 20 8 3.4125 1.4336 7.0001 21 6 1.9845 -0.4877 3.7073 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.7095 1.1619 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 1.4068 1.0721 2.2482 28 1 4.2656 -0.1209 2.4558 29 1 3.7853 1.6314 2.4552 30 1 3.8026 0.0290 4.8578 31 1 1.7123 2.1234 4.3740 32 1 4.7304 3.6641 4.5544 33 1 5.4411 3.4792 6.1761 34 1 5.4228 2.1011 5.0500 35 1 1.0187 -0.3624 4.1967 36 1 2.3164 -1.5256 3.6829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309015263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:32 Heat of formation + Delta-G solvation = -78.340874 kcal Electronic energy + Delta-G solvation = -18144.089807 eV Core-core repulsion = 15175.941488 eV Total energy + Delta-G solvation = -2968.148319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.34023 -38.10558 -37.00357 -36.92400 -34.38036 -32.83681 -30.22398 -29.34208 -27.22165 -26.48287 -24.40886 -22.07822 -20.82477 -20.08445 -18.69427 -18.26142 -17.22993 -17.00394 -16.79468 -16.42846 -16.02930 -15.36240 -14.82210 -14.39872 -14.19024 -13.97420 -13.91101 -13.61978 -13.33722 -13.16084 -13.09357 -13.00412 -12.90932 -12.84429 -12.68438 -12.20733 -12.09086 -11.94388 -11.86926 -11.50247 -11.19081 -10.81442 -10.46990 -10.27571 -8.89652 -8.07578 -6.18185 -0.61299 1.43027 1.45429 1.57159 1.79101 2.45993 2.92511 3.21296 3.31856 3.67917 3.74544 3.77277 4.04735 4.10836 4.19954 4.32927 4.37879 4.73113 4.76059 4.89206 4.99065 5.01575 5.04472 5.12654 5.23942 5.32684 5.41745 5.60921 5.72487 5.88832 6.09550 6.32866 6.71992 6.92101 7.00314 7.52424 8.98025 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.003966 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.868016 B = 7057.484008 C = 7093.259022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.001 0.999 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.673 5.673 13 C 0.047 3.953 14 C -0.138 4.138 15 C 0.134 3.866 16 N -1.101 6.101 17 S 2.630 3.370 18 C -0.654 4.654 19 O -1.003 7.003 20 O -0.995 6.995 21 C -0.139 4.139 22 H 0.030 0.970 23 H 0.023 0.977 24 H 0.058 0.942 25 H 0.259 0.741 26 H 0.331 0.669 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.419 0.581 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.072 0.928 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 2.061 15.173 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.303 5.303 13 C -0.064 4.064 14 C -0.178 4.178 15 C 0.025 3.975 16 N -0.858 5.858 17 S 2.726 3.274 18 C -0.808 4.808 19 O -0.993 6.993 20 O -0.985 6.985 21 C -0.179 4.179 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.149 0.851 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.254 0.746 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.091 0.909 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.512 2.275 15.842 17.680 hybrid contribution -0.976 0.191 -1.703 1.972 sum 6.535 2.466 14.139 15.771 Atomic orbital electron populations 1.22263 1.00407 0.99094 0.99840 1.18940 0.89637 0.92671 0.88019 0.98116 1.21517 1.30059 1.12312 0.91086 0.92604 1.25712 0.95551 0.95880 1.01915 1.70021 1.38306 1.24404 1.23783 0.85498 0.77995 0.78657 0.79381 1.19154 1.20886 1.20903 1.60820 1.57107 1.09152 1.03174 1.23108 0.97796 0.95540 0.89947 1.23592 0.97256 1.02235 0.94741 1.21544 0.96894 0.84419 0.94631 1.55275 1.41264 1.35404 1.53875 1.04043 0.77437 0.72702 0.73179 1.30365 1.21345 1.14279 1.14781 1.93563 1.67873 1.53642 1.84251 1.93564 1.87683 1.57449 1.59853 1.23547 0.99747 1.00014 0.94593 0.95040 0.95801 0.92313 0.93165 0.85088 0.93229 0.88345 0.91370 0.85473 0.74642 0.83912 0.83497 0.83419 0.90935 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.38 8.93 71.98 0.64 -6.74 16 2 C 0.22 10.56 2.43 44.17 0.11 10.66 16 3 H 0.00 0.05 7.84 -2.39 -0.02 0.03 16 4 C -0.51 -27.72 8.84 25.60 0.23 -27.50 16 5 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.39 5.30 84.66 0.45 0.84 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.59 16 8 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.67 -26.14 6.29 -470.63 -2.96 -29.10 16 13 C 0.05 1.43 3.66 45.44 0.17 1.60 16 14 C -0.14 -3.39 7.68 31.12 0.24 -3.15 16 15 C 0.13 2.60 4.39 45.52 0.20 2.80 16 16 N -1.10 -20.34 5.62 -167.19 -0.94 -21.28 16 17 S 2.63 46.37 6.07 -56.49 -0.34 46.03 16 18 C -0.65 -6.13 10.89 113.37 1.23 -4.89 16 19 O -1.00 -25.51 18.08 -127.65 -2.31 -27.82 16 20 O -1.00 -24.22 17.58 -127.65 -2.24 -26.47 16 21 C -0.14 -3.21 7.44 31.12 0.23 -2.98 16 22 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 23 H 0.02 0.98 7.74 -2.38 -0.02 0.96 16 24 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.33 12.19 8.29 -89.69 -0.74 11.45 16 27 H 0.05 1.66 7.45 -2.39 -0.02 1.64 16 28 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.13 1.93 7.77 -2.38 -0.02 1.91 16 31 H 0.42 7.83 8.75 -96.75 -0.85 6.99 16 32 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -71.77 310.52 -3.53 -75.30 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.51 Total: 19.92 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 3.50 Total: -29.36 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.66 Total: -102.98 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -4.55 Total: -54.29 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 46.37 SS G_CDS: -0.34 Total: 46.03 kcal Total: -71.77 -3.53 -75.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309015263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.037 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds