Wall clock time and date at job start Mon Mar 30 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47278 * 2 1 4 4 C 1.50705 * 109.46898 * 120.00257 * 2 1 3 5 5 H 1.07999 * 119.99949 * 114.49181 * 4 2 1 6 6 C 1.37869 * 119.99964 * 294.48312 * 4 2 1 7 7 N 1.31519 * 120.00249 * 164.82385 * 6 4 2 8 8 Si 1.86804 * 120.00353 * 344.82685 * 6 4 2 9 9 H 1.48498 * 109.47052 * 270.00113 * 8 6 4 10 10 H 1.48500 * 109.47007 * 29.99676 * 8 6 4 11 11 H 1.48494 * 109.47182 * 149.99795 * 8 6 4 12 12 N 1.46905 * 109.47455 * 240.00295 * 2 1 3 13 13 C 1.46894 * 111.00077 * 84.99735 * 12 2 1 14 14 C 1.53774 * 113.61672 * 254.14201 * 13 12 2 15 15 C 1.53960 * 87.02193 * 220.04699 * 14 13 12 16 16 N 1.46498 * 113.66644 * 139.92983 * 15 14 13 17 17 S 1.65595 * 120.00108 * 117.44535 * 16 15 14 18 18 C 1.81401 * 104.45117 * 64.99445 * 17 16 15 19 19 O 1.42095 * 104.28130 * 181.06722 * 17 16 15 20 20 O 1.42097 * 104.27586 * 308.92599 * 17 16 15 21 21 C 1.53775 * 113.61436 * 156.53208 * 13 12 2 22 22 H 1.08998 * 109.46741 * 53.46184 * 1 2 3 23 23 H 1.09000 * 109.46607 * 173.45788 * 1 2 3 24 24 H 1.09000 * 109.47147 * 293.46236 * 1 2 3 25 25 H 0.97001 * 119.99415 * 354.90349 * 7 6 4 26 26 H 1.00901 * 111.00115 * 208.95732 * 12 2 1 27 27 H 1.09001 * 112.84865 * 25.33884 * 13 12 2 28 28 H 1.09001 * 113.61283 * 334.56446 * 14 13 12 29 29 H 1.09000 * 113.62206 * 105.46846 * 14 13 12 30 30 H 1.08994 * 113.61470 * 270.80066 * 15 14 13 31 31 H 0.97002 * 120.00293 * 297.43893 * 16 15 14 32 32 H 1.09006 * 109.47160 * 60.00330 * 18 17 16 33 33 H 1.09000 * 109.47437 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47177 * 300.00743 * 18 17 16 35 35 H 1.09005 * 113.61305 * 254.52903 * 21 13 12 36 36 H 1.08996 * 113.61773 * 25.43358 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5778 -1.6375 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9588 -0.9187 3.5532 8 14 1.2427 1.5996 2.6469 9 1 2.4330 2.4788 2.7701 10 1 0.4612 1.9900 1.4461 11 1 0.3946 1.7421 3.8574 12 7 2.0198 -0.6924 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 0.9671 -0.0074 -3.3801 15 6 2.0314 0.2390 -4.4649 16 7 1.9133 -0.6559 -5.6187 17 16 1.5954 -0.0337 -7.1201 18 6 3.0575 0.9647 -7.5151 19 8 1.5273 -1.1742 -7.9649 20 8 0.4616 0.7994 -6.9212 21 6 3.0762 -0.2197 -3.4339 22 1 -0.3633 0.6118 -0.8257 23 1 -0.3632 -1.0210 -0.1171 24 1 -0.3633 0.4092 0.9427 25 1 2.1736 -1.8604 3.4640 26 1 2.9174 -1.1205 -1.0288 27 1 2.1951 1.2656 -2.0508 28 1 0.5730 -1.0237 -3.3781 29 1 0.1847 0.7511 -3.3544 30 1 2.1299 1.2864 -4.7500 31 1 2.0213 -1.6130 -5.5033 32 1 3.9424 0.3282 -7.5175 33 1 2.9330 1.4181 -8.4986 34 1 3.1756 1.7481 -6.7666 35 1 3.9942 0.3679 -3.4516 36 1 3.2598 -1.2940 -3.4467 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309015264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:35 Heat of formation + Delta-G solvation = -82.122502 kcal Electronic energy + Delta-G solvation = -18092.601905 eV Core-core repulsion = 15124.289603 eV Total energy + Delta-G solvation = -2968.312303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27225 -38.08435 -37.02202 -36.92828 -34.56902 -33.19731 -30.23086 -30.06580 -26.88130 -26.37370 -24.12764 -21.55807 -20.94192 -20.28285 -19.47545 -18.49726 -17.48093 -17.12000 -16.58037 -16.30369 -16.12208 -15.32467 -15.19336 -14.51459 -14.10399 -13.99432 -13.80502 -13.62454 -13.53487 -13.26400 -13.19761 -13.13039 -13.03275 -12.84079 -12.39184 -12.25640 -11.93296 -11.85018 -11.56587 -11.39797 -11.26222 -10.92420 -10.49371 -10.21715 -9.11280 -8.70613 -6.36528 -0.60297 1.48796 1.53801 1.71947 1.83410 2.51055 2.94666 3.07795 3.34210 3.60931 3.67240 3.73259 3.95723 4.08983 4.10755 4.25558 4.39457 4.63745 4.73878 4.89619 4.91919 4.98181 5.00126 5.00565 5.11509 5.18933 5.25461 5.57213 5.64681 5.85590 6.04831 6.14271 6.34968 6.75747 6.86113 7.42160 8.64785 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.049169 B = 0.003943 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.327383 B = 7098.994007 C = 7198.205698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.189 3.811 3 H 0.002 0.998 4 C -0.604 4.604 5 H 0.023 0.977 6 C -0.020 4.020 7 N -0.942 5.942 8 Si 1.084 2.916 9 H -0.273 1.273 10 H -0.239 1.239 11 H -0.289 1.289 12 N -0.674 5.674 13 C 0.044 3.956 14 C -0.142 4.142 15 C 0.138 3.862 16 N -1.102 6.102 17 S 2.620 3.380 18 C -0.650 4.650 19 O -1.005 7.005 20 O -1.002 7.002 21 C -0.133 4.133 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.252 0.748 26 H 0.335 0.665 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.422 0.578 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 7.044 -22.779 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.019 0.981 4 C -0.642 4.642 5 H 0.041 0.959 6 C -0.218 4.218 7 N -0.578 5.578 8 Si 0.905 3.095 9 H -0.199 1.199 10 H -0.163 1.163 11 H -0.215 1.215 12 N -0.305 5.305 13 C -0.067 4.067 14 C -0.183 4.183 15 C 0.030 3.970 16 N -0.859 5.859 17 S 2.717 3.283 18 C -0.804 4.804 19 O -0.995 6.995 20 O -0.992 6.992 21 C -0.173 4.173 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.153 0.847 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.257 0.743 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.112 0.888 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.562 7.978 -22.406 23.922 hybrid contribution 1.676 -1.601 0.018 2.318 sum 4.238 6.377 -22.388 23.661 Atomic orbital electron populations 1.21967 0.97635 0.99772 0.99057 1.19392 0.92638 0.92114 0.87912 0.98082 1.22392 1.38873 1.09479 0.93460 0.95895 1.27159 0.93918 1.08878 0.91824 1.70937 1.47095 1.07727 1.32023 0.83631 0.77684 0.71062 0.77146 1.19867 1.16292 1.21544 1.60579 1.32160 1.32739 1.05003 1.23081 0.98070 0.95379 0.90185 1.23595 0.97365 1.02244 0.95064 1.22165 0.96312 0.94493 0.84045 1.55365 1.89726 1.17721 1.23107 1.04293 0.77163 0.74437 0.72428 1.30331 1.20034 1.16457 1.13610 1.93558 1.88116 1.50565 1.67277 1.93578 1.49417 1.71207 1.84988 1.23556 0.97488 1.02918 0.93348 0.93497 0.94627 0.94358 0.93881 0.84692 0.91230 0.90413 0.91909 0.84534 0.74254 0.83194 0.83770 0.83353 0.88760 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.68 71.98 0.62 -4.84 16 2 C 0.19 8.58 2.15 44.17 0.09 8.67 16 3 H 0.00 0.07 6.11 -2.39 -0.01 0.06 16 4 C -0.60 -33.63 8.85 25.60 0.23 -33.41 16 5 H 0.02 1.40 7.92 -2.91 -0.02 1.38 16 6 C -0.02 -1.13 5.33 84.65 0.45 -0.68 16 7 N -0.94 -58.91 13.70 21.45 0.29 -58.61 16 8 Si 1.08 49.06 26.17 68.60 1.80 50.85 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 10 H -0.24 -9.55 5.54 99.48 0.55 -9.00 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 N -0.67 -25.58 6.35 -470.63 -2.99 -28.57 16 13 C 0.04 1.23 4.00 45.44 0.18 1.41 16 14 C -0.14 -3.66 7.69 31.18 0.24 -3.42 16 15 C 0.14 2.37 4.23 45.58 0.19 2.57 16 16 N -1.10 -16.90 5.68 -166.95 -0.95 -17.85 16 17 S 2.62 40.75 6.04 -56.49 -0.34 40.41 16 18 C -0.65 -3.50 10.89 113.37 1.23 -2.27 16 19 O -1.00 -23.42 18.08 -127.65 -2.31 -25.73 16 20 O -1.00 -24.39 17.82 -127.65 -2.27 -26.66 16 21 C -0.13 -2.52 7.45 31.12 0.23 -2.29 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.04 1.68 5.06 -2.39 -0.01 1.67 16 25 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 26 H 0.33 12.90 8.09 -89.69 -0.73 12.18 16 27 H 0.07 1.95 7.49 -2.39 -0.02 1.93 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.14 1.57 7.74 -2.39 -0.02 1.55 16 31 H 0.42 6.08 8.91 -96.75 -0.86 5.22 16 32 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.15 0.33 7.83 -2.39 -0.02 0.31 16 35 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.32 305.85 -3.99 -82.30 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.69 Total: 18.11 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.48 Total: -34.25 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.64 Total: -105.04 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -4.58 Total: -52.39 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.80 Total: 50.85 kcal Atomic # 16 Polarization: 40.75 SS G_CDS: -0.34 Total: 40.41 kcal Total: -78.32 -3.99 -82.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309015264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.180 kcal (2) G-P(sol) polarization free energy of solvation -78.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds