Wall clock time and date at job start Mon Mar 30 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.88812 * 2 1 4 4 C 1.54901 * 111.00507 * 123.92472 * 2 1 3 5 5 N 1.47426 * 104.83400 * 155.08004 * 4 2 1 6 6 S 1.65598 * 125.65034 * 155.83651 * 5 4 2 7 7 O 1.42098 * 104.27773 * 206.07338 * 6 5 4 8 8 O 1.42107 * 104.27675 * 333.92816 * 6 5 4 9 9 C 1.81393 * 104.45323 * 90.00092 * 6 5 4 10 10 C 1.53001 * 109.47557 * 180.02562 * 9 6 5 11 11 C 1.50694 * 109.47090 * 180.02562 * 10 9 6 12 12 H 1.08001 * 120.00573 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99650 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99714 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00197 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47443 * 89.99806 * 15 13 11 17 17 H 1.48500 * 109.47054 * 210.00172 * 15 13 11 18 18 H 1.48509 * 109.46949 * 329.99546 * 15 13 11 19 19 C 1.47019 * 108.70376 * 335.87327 * 5 4 2 20 20 C 1.54330 * 107.26866 * 1.05523 * 19 5 4 21 21 H 1.09002 * 110.71679 * 140.55640 * 20 19 5 22 22 N 1.46897 * 110.72084 * 263.82980 * 20 19 5 23 23 H 1.08995 * 109.47378 * 183.88293 * 1 2 3 24 24 H 1.08999 * 109.46808 * 303.88356 * 1 2 3 25 25 H 1.09003 * 109.47287 * 63.87797 * 1 2 3 26 26 H 1.09004 * 110.36831 * 273.91814 * 4 2 1 27 27 H 1.08999 * 110.37045 * 36.24225 * 4 2 1 28 28 H 1.09005 * 109.47313 * 300.00467 * 9 6 5 29 29 H 1.09004 * 109.46869 * 59.99951 * 9 6 5 30 30 H 1.09006 * 109.46369 * 299.99897 * 10 9 6 31 31 H 1.08992 * 109.46867 * 59.99422 * 10 9 6 32 32 H 0.97000 * 120.00120 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.88042 * 241.64152 * 19 5 4 34 34 H 1.08996 * 109.88551 * 120.47294 * 19 5 4 35 35 H 1.00903 * 110.99859 * 293.51989 * 22 20 19 36 36 H 1.00901 * 110.99892 * 57.47881 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.1999 5 7 3.4271 -1.2434 0.7727 6 16 4.6816 -1.6336 1.7809 7 8 5.8455 -1.3815 1.0058 8 8 4.4186 -0.8985 2.9683 9 6 4.4874 -3.4126 2.0775 10 6 5.6007 -3.8991 3.0075 11 6 5.4397 -5.3771 3.2534 12 1 4.6246 -5.9156 2.7928 13 6 6.3330 -6.0420 4.0664 14 7 6.1922 -7.3319 4.2814 15 14 7.7423 -5.1106 4.8637 16 1 7.3078 -4.5916 6.1853 17 1 8.8987 -6.0242 5.0464 18 1 8.1409 -3.9757 3.9928 19 6 3.4674 -1.2739 -0.6966 20 6 2.0860 -0.8075 -1.2026 21 1 2.1921 -0.1692 -2.0797 22 7 1.2244 -1.9600 -1.4978 23 1 -0.3634 -1.0252 0.0696 24 1 -0.3633 0.5729 0.8531 25 1 -0.3634 0.4525 -0.9227 26 1 2.1561 -0.1727 2.0836 27 1 1.4519 -1.6709 1.4018 28 1 3.5190 -3.6001 2.5415 29 1 4.5457 -3.9475 1.1296 30 1 6.5692 -3.7116 2.5438 31 1 5.5420 -3.3642 3.9553 32 1 6.8208 -7.7997 4.8531 33 1 3.6649 -2.2890 -1.0410 34 1 4.2425 -0.5994 -1.0603 35 1 1.5822 -2.4882 -2.2795 36 1 1.1145 -2.5470 -0.6845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309517412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:37 Heat of formation + Delta-G solvation = -77.815523 kcal Electronic energy + Delta-G solvation = -18506.184390 eV Core-core repulsion = 15538.058852 eV Total energy + Delta-G solvation = -2968.125538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.34696 -36.77964 -35.61813 -33.98889 -33.47812 -31.92291 -31.51503 -27.83022 -26.24074 -25.83369 -22.38476 -21.16398 -19.98100 -18.77884 -17.87126 -17.00925 -16.72249 -15.77743 -15.64250 -14.92597 -14.42086 -14.24746 -13.96114 -13.89829 -13.68049 -13.04939 -12.85177 -12.72906 -12.27682 -11.94211 -11.87798 -11.76530 -11.66024 -11.29179 -11.27660 -11.24084 -10.98903 -10.76550 -10.48155 -10.19773 -9.79880 -9.47978 -9.06990 -8.80000 -8.69302 -6.19683 -4.21227 0.55827 2.87986 3.24274 3.31649 3.35729 4.09859 4.13719 4.23657 4.33116 4.39586 4.61399 4.82126 5.06549 5.12061 5.15405 5.32872 5.35778 5.46105 5.48519 5.54817 5.56608 5.66465 5.89001 5.93973 6.04019 6.21714 6.23661 6.35190 6.77098 6.86050 6.89807 7.17607 7.51229 8.33144 8.80907 9.39860 10.92689 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.033961 B = 0.005228 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.276148 B = 5354.042287 C = 5631.849323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.114 3.886 5 N -1.017 6.017 6 S 2.604 3.396 7 O -0.962 6.962 8 O -0.961 6.961 9 C -0.582 4.582 10 C -0.007 4.007 11 C -0.520 4.520 12 H 0.077 0.923 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.869 3.131 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.262 1.262 19 C 0.085 3.915 20 C 0.086 3.914 21 H 0.098 0.902 22 N -0.835 5.835 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.343 0.657 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 13.131 -10.781 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.011 4.011 5 N -0.854 5.854 6 S 2.703 3.297 7 O -0.953 6.953 8 O -0.952 6.952 9 C -0.715 4.715 10 C -0.046 4.046 11 C -0.559 4.559 12 H 0.095 0.905 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.696 3.304 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.043 4.043 20 C -0.028 4.028 21 H 0.116 0.884 22 N -0.365 5.365 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.130 14.132 -10.473 20.299 hybrid contribution 1.364 -0.954 0.598 1.769 sum -8.766 13.178 -9.875 18.656 Atomic orbital electron populations 1.21503 0.93045 1.02653 1.01350 1.22429 0.96902 0.98968 0.93397 0.89503 1.22160 0.82374 0.98343 0.98234 1.58797 1.27084 1.83296 1.16179 1.05320 0.72511 0.78812 0.73062 1.93539 1.46463 1.85105 1.70148 1.93540 1.84403 1.69867 1.47353 1.30337 1.10061 1.20942 1.10137 1.19411 0.91832 0.99893 0.93484 1.20835 1.14315 0.90263 1.30507 0.90450 1.24983 0.97513 0.94816 0.95739 1.69880 1.37371 1.08189 1.37858 0.86922 0.82411 0.80458 0.80653 1.19612 1.20684 1.18662 1.22642 1.00082 1.01426 0.80141 1.22518 0.88763 0.93346 0.98158 0.88361 1.58891 1.52799 1.13243 1.11517 0.91562 0.93096 0.92227 0.89719 0.91509 0.85708 0.85867 0.94982 0.95365 0.92335 0.91827 0.90784 0.84342 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 8.86 37.16 0.33 -0.65 16 2 C -0.10 -0.85 3.54 -88.48 -0.31 -1.16 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.11 1.25 6.23 -2.53 -0.02 1.23 16 5 N -1.02 -13.20 3.62 -111.42 -0.40 -13.60 16 6 S 2.60 45.07 5.65 -107.50 -0.61 44.46 16 7 O -0.96 -19.21 17.60 -57.54 -1.01 -20.22 16 8 O -0.96 -19.04 17.28 -57.54 -0.99 -20.04 16 9 C -0.58 -10.70 6.11 37.16 0.23 -10.47 16 10 C -0.01 -0.16 4.05 -27.89 -0.11 -0.28 16 11 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 12 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 15 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 19 C 0.09 0.91 6.61 -3.06 -0.02 0.89 16 20 C 0.09 0.71 3.94 -65.88 -0.26 0.45 16 21 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 22 N -0.83 -6.30 8.04 -3.11 -0.03 -6.32 16 23 H 0.07 0.52 7.19 -51.93 -0.37 0.15 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 27 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 28 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 29 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 30 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 31 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.34 2.18 9.08 -39.29 -0.36 1.83 16 36 H 0.34 2.68 8.10 -39.29 -0.32 2.37 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -34.02 304.65 -8.52 -42.54 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.57 Total: 0.89 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.60 Total: -22.88 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.35 Total: -46.18 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.01 Total: -40.26 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 45.07 SS G_CDS: -0.61 Total: 44.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.02 -8.52 -42.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309517412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.277 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds