Wall clock time and date at job start Mon Mar 30 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.88812 * 2 1 4 4 C 1.54901 * 111.00507 * 123.92472 * 2 1 3 5 5 N 1.47426 * 104.83400 * 155.08004 * 4 2 1 6 6 S 1.65598 * 125.65034 * 155.83651 * 5 4 2 7 7 O 1.42098 * 104.27773 * 206.07338 * 6 5 4 8 8 O 1.42107 * 104.27675 * 333.92816 * 6 5 4 9 9 C 1.81393 * 104.45323 * 90.00092 * 6 5 4 10 10 C 1.53001 * 109.47557 * 180.02562 * 9 6 5 11 11 C 1.50694 * 109.47090 * 180.02562 * 10 9 6 12 12 H 1.08001 * 120.00573 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99650 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99714 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00197 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47443 * 89.99806 * 15 13 11 17 17 H 1.48500 * 109.47054 * 210.00172 * 15 13 11 18 18 H 1.48509 * 109.46949 * 329.99546 * 15 13 11 19 19 C 1.47019 * 108.70376 * 335.87327 * 5 4 2 20 20 C 1.54330 * 107.26866 * 1.05523 * 19 5 4 21 21 H 1.09002 * 110.71679 * 140.55640 * 20 19 5 22 22 N 1.46897 * 110.72084 * 263.82980 * 20 19 5 23 23 H 1.08995 * 109.47378 * 183.88293 * 1 2 3 24 24 H 1.08999 * 109.46808 * 303.88356 * 1 2 3 25 25 H 1.09003 * 109.47287 * 63.87797 * 1 2 3 26 26 H 1.09004 * 110.36831 * 273.91814 * 4 2 1 27 27 H 1.08999 * 110.37045 * 36.24225 * 4 2 1 28 28 H 1.09005 * 109.47313 * 300.00467 * 9 6 5 29 29 H 1.09004 * 109.46869 * 59.99951 * 9 6 5 30 30 H 1.09006 * 109.46369 * 299.99897 * 10 9 6 31 31 H 1.08992 * 109.46867 * 59.99422 * 10 9 6 32 32 H 0.97000 * 120.00120 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.88042 * 241.64152 * 19 5 4 34 34 H 1.08996 * 109.88551 * 120.47294 * 19 5 4 35 35 H 1.00903 * 110.99859 * 293.51989 * 22 20 19 36 36 H 1.00901 * 110.99892 * 57.47881 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.1999 5 7 3.4271 -1.2434 0.7727 6 16 4.6816 -1.6336 1.7809 7 8 5.8455 -1.3815 1.0058 8 8 4.4186 -0.8985 2.9683 9 6 4.4874 -3.4126 2.0775 10 6 5.6007 -3.8991 3.0075 11 6 5.4397 -5.3771 3.2534 12 1 4.6246 -5.9156 2.7928 13 6 6.3330 -6.0420 4.0664 14 7 6.1922 -7.3319 4.2814 15 14 7.7423 -5.1106 4.8637 16 1 7.3078 -4.5916 6.1853 17 1 8.8987 -6.0242 5.0464 18 1 8.1409 -3.9757 3.9928 19 6 3.4674 -1.2739 -0.6966 20 6 2.0860 -0.8075 -1.2026 21 1 2.1921 -0.1692 -2.0797 22 7 1.2244 -1.9600 -1.4978 23 1 -0.3634 -1.0252 0.0696 24 1 -0.3633 0.5729 0.8531 25 1 -0.3634 0.4525 -0.9227 26 1 2.1561 -0.1727 2.0836 27 1 1.4519 -1.6709 1.4018 28 1 3.5190 -3.6001 2.5415 29 1 4.5457 -3.9475 1.1296 30 1 6.5692 -3.7116 2.5438 31 1 5.5420 -3.3642 3.9553 32 1 6.8208 -7.7997 4.8531 33 1 3.6649 -2.2890 -1.0410 34 1 4.2425 -0.5994 -1.0603 35 1 1.5822 -2.4882 -2.2795 36 1 1.1145 -2.5470 -0.6845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309517412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:36 Heat of formation + Delta-G solvation = -105.250957 kcal Electronic energy + Delta-G solvation = -18507.374080 eV Core-core repulsion = 15538.058852 eV Total energy + Delta-G solvation = -2969.315228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14588 -38.26898 -37.11376 -35.93927 -34.32089 -33.51518 -32.60912 -28.62498 -27.93651 -26.83616 -23.44466 -22.85531 -20.69849 -20.05025 -19.43749 -18.61325 -17.65728 -17.11389 -17.00949 -16.41687 -15.84686 -15.44446 -15.02149 -14.87572 -14.75824 -14.70100 -13.86563 -13.84290 -13.61043 -13.35014 -13.24974 -13.11820 -13.02006 -12.99169 -12.63899 -12.28864 -12.16192 -11.97300 -11.74801 -11.66724 -11.44848 -11.35671 -10.87493 -10.05700 -9.55895 -8.39756 -6.45910 -0.83504 1.29722 1.31526 1.41506 1.64761 2.26793 2.74404 2.94053 3.00329 3.45657 3.60036 3.79485 3.85235 3.99103 4.12356 4.30752 4.43429 4.50940 4.53503 4.69976 4.77054 4.85654 4.91654 5.00438 5.03503 5.14176 5.24745 5.31785 5.38840 5.43461 5.63060 6.12980 6.25664 6.59815 6.62573 7.18734 8.75811 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.033961 B = 0.005228 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.276148 B = 5354.042287 C = 5631.849323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.092 4.092 3 H 0.090 0.910 4 C 0.104 3.896 5 N -1.011 6.011 6 S 2.633 3.367 7 O -0.989 6.989 8 O -0.987 6.987 9 C -0.586 4.586 10 C -0.017 4.017 11 C -0.529 4.529 12 H 0.049 0.951 13 C 0.015 3.985 14 N -0.939 5.939 15 Si 0.925 3.075 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.251 1.251 19 C 0.074 3.926 20 C 0.096 3.904 21 H 0.115 0.885 22 N -0.833 5.833 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.271 0.729 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.351 0.649 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 14.680 -11.669 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.112 4.112 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.850 5.850 6 S 2.731 3.269 7 O -0.979 6.979 8 O -0.977 6.977 9 C -0.717 4.717 10 C -0.056 4.056 11 C -0.568 4.568 12 H 0.068 0.932 13 C -0.183 4.183 14 N -0.578 5.578 15 Si 0.747 3.253 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.175 1.175 19 C -0.053 4.053 20 C -0.018 4.018 21 H 0.133 0.867 22 N -0.363 5.363 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.166 0.834 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.744 15.668 -11.365 22.138 hybrid contribution 1.432 -1.448 0.789 2.183 sum -9.313 14.220 -10.576 20.020 Atomic orbital electron populations 1.21462 0.91946 1.02719 1.01868 1.22439 0.97619 0.98799 0.92372 0.89180 1.22446 0.81353 0.99259 0.99016 1.58411 1.27089 1.82556 1.16970 1.04150 0.72514 0.77620 0.72592 1.93500 1.48591 1.85141 1.70689 1.93502 1.84987 1.70072 1.49155 1.30323 1.08814 1.22832 1.09766 1.19370 0.93873 0.97385 0.94963 1.21151 1.13290 0.92500 1.29835 0.93245 1.25860 1.00326 0.95624 0.96529 1.70003 1.38830 1.09858 1.39142 0.86030 0.79425 0.79630 0.80193 1.18432 1.19723 1.17492 1.22976 1.01753 1.02148 0.78397 1.22505 0.87172 0.93680 0.98416 0.86676 1.58908 1.52313 1.13285 1.11789 0.91704 0.92646 0.91657 0.90586 0.90032 0.84321 0.84523 0.95081 0.95104 0.92033 0.90963 0.91131 0.83435 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.86 71.98 0.64 -0.90 16 2 C -0.09 -1.37 3.54 -9.40 -0.03 -1.41 16 3 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.10 2.06 6.23 86.85 0.54 2.60 16 5 N -1.01 -24.51 3.62 -506.43 -1.83 -26.34 16 6 S 2.63 88.26 5.65 -56.49 -0.32 87.94 16 7 O -0.99 -38.51 17.60 -127.65 -2.25 -40.75 16 8 O -0.99 -38.18 17.28 -127.65 -2.21 -40.39 16 9 C -0.59 -21.07 6.11 71.98 0.44 -20.63 16 10 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 11 C -0.53 -29.95 9.66 25.60 0.25 -29.70 16 12 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 13 C 0.02 0.89 5.47 84.66 0.46 1.36 16 14 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 15 Si 0.92 43.91 27.47 68.60 1.88 45.79 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 19 C 0.07 1.43 6.61 86.73 0.57 2.01 16 20 C 0.10 1.33 3.94 46.11 0.18 1.51 16 21 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 22 N -0.83 -10.26 8.04 -163.76 -1.32 -11.58 16 23 H 0.06 0.85 7.19 -2.39 -0.02 0.83 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 1.66 7.67 -2.38 -0.02 1.64 16 27 H 0.08 1.38 7.67 -2.39 -0.02 1.36 16 28 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 29 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 30 H 0.03 1.46 7.20 -2.38 -0.02 1.44 16 31 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.35 3.51 9.08 -89.69 -0.81 2.70 16 36 H 0.34 4.47 8.10 -89.69 -0.73 3.74 16 Total: -1.00 -72.68 304.65 -3.08 -75.76 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -0.51 Total: 12.75 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 3.17 Total: -45.84 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -2.85 Total: -95.26 kcal Atomic # 8 Polarization: -76.69 SS G_CDS: -4.45 Total: -81.14 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 16 Polarization: 88.26 SS G_CDS: -0.32 Total: 87.94 kcal Total: -72.68 -3.08 -75.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309517412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.488 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds